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1  % $Id$  Created by Kbib version 0.6.5
2    \#Last modified: Wed May 20 10:08:05 2009
3    
4  @BOOK{SAAD,  @Book{ SAAD,
5    AUTHOR  = {Y. Saad},      author = "Y. Saad",
6    EDITOR  = {},      title = "Iterative Methods for Sparse Linear Systems",
7    TITLE   = {Iterative Methods for Sparse Linear Systems},      publisher = "PWS Publishing Company",
8    PUBLISHER = {PWS Publishing Company},      year = "1996",
9    YEAR    = {1996},      address = "20 Park Plaza, Boston, MA 02116, USA"
10    SERIES  = {},  }
11    ADDRESS = {20 Park Plaza, Boston, MA 02116, USA},  
12   NOTE    = {}   }  @Book{ WEISS,
13        author = "R. Weiss",
14  @BOOK{WEISS,      title = "Parameter-Free Iterative Linear Solvers",
15    AUTHOR  = {R. Weiss},      publisher = "Akademie Verlag",
16    TITLE   = {Parameter-Free Iterative Linear Solvers},      year = "1996",
17    SERIES  = {Mathematical Research, vol.\ 97},      series = "Mathematical Research, vol.\ 97",
18    PUBLISHER = {Akademie Verlag},      address = "Berlin"
19    YEAR    = {1996},  }
20    ADDRESS = {Berlin},  
21    NOTE    = {}   }  @Book{ AMG,
22        author = "Y. Shapira",
23  % FEM stuff      title = "Matrix-Based Multigrid",
24        publisher = "Springer",
25  @Book{AMG,      year = "2008"
26  author = {Y. Shapira},  }
27  ALTeditor = {},  
28  title = {Matrix-Based Multigrid},  @Book{ NumHand,
29  publisher = {Springer},      author = "P.~G. Ciarlet and J.~L. Lions",
30  year = {2008},      title = "Handbook of Numerical Analysis",
31  OPTkey = {},      publisher = "North Holland",
32  OPTvolume = {},      year = "1991",
33  OPTnumber = {},      volume = "2",
34  OPTseries = {},      address = "Amsterdam"
35  OPTaddress = {},  }
36  OPTedition = {},  
37  OPTmonth = {},  @InProceedings{ NUMARRAY,
38  OPTnote = {},      author = "Todd Miller Jin-Chung Hsu {Perry Greenfield} and Richard L. White",
39  OPTannote = {},      title = "An Array Module for Python",
40  OPTurl = {},      booktitle = "Astronomical Data Analysis Software and Systems XI",
41  OPTdoi = {},      year = "2001"
42  OPTissn = {},  }
43  OPTlocalfile = {},  
44  OPTabstract = {}  @Book{ Zienc,
45  }      author = "O.~C. Zienkiewicz",
46        title = "The Finite Element Method in Engineering Science",
47        publisher = "McGraw-Hill",
48  @BOOK{NumHand,      year = "1971",
49    AUTHOR  = {P.~G. Ciarlet and J.~L. Lions},      address = "London",
50    TITLE   = {Handbook of Numerical Analysis},      edition = "second"
51    VOLUME  = {2},  }
52    YEAR    = {1991},  
53    PUBLISHER = {North Holland},  @Article{ SUPG2,
54    ADDRESS = {Amsterdam},      author = "H.C. Elman and A. Ramage",
55    NOTE    = {}   }      title = "An Analysis of Smoothing Effects of Upwinding Strategies For The Convection-Diffusion Equation",
56        journal = "SIAM J. Numer. Anal.",
57  @INPROCEEDINGS{NUMARRAY,      year = "2002",
58    AUTHOR={Perry Greenfield, Todd Miller, Jin-Chung Hsu and Richard L. White},      volume = "40",
59    TITLE={An Array Module for Python},      number = "1",
60    EDITOR={},      pages = "254--281"
61    BOOKTITLE={Astronomical Data Analysis Software and Systems XI},  }
62    PUBLISHER={ },YEAR={2001}}  
63    @Book{ TURCOTTE2002,
64  @BOOK{Zienc,      author = "Donald L. Turcotte and Gerald Schubert",
65    AUTHOR  = {O.~C. Zienkiewicz},      title = "Geodynamics",
66    TITLE   = {The Finite Element Method in Engineering Science},      publisher = "Cambridge University Press",
67    PUBLISHER = {McGraw-Hill},      year = 2002,
68    YEAR    = {1971},      edition = "Second"
69    ADDRESS = {London},  }
70    EDITION = {second},  
71    NOTE    = {}   }  @Article{ MORESI2003,
72        author = "L. Moresi and F. Dufour and H. \-B. M {\"u}hlhaus",
73  @ARTICLE{SUPG2,      title = "A {Lagrangian} integration point finite element method for large deformation modeling of viscoelastic geomaterials",
74    AUTHOR  = {H.C. Elman and A. Ramage},      journal = "Journal of Computational Physics",
75    TITLE   = {An Analysis of Smoothing Effects of Upwinding Strategies For The Convection-Diffusion Equation},      year = 2003,
76    JOURNAL = {SIAM J. Numer. Anal.},      number = 184,
77    YEAR    = {2002},      pages = "476--497"
78   VOLUME  = {40},  }
79   NUMBER  = {1},  
80   PAGES   = {254--281}}  @Article{ GROSZ99c,
81        author = "L.~Grosz",
82  @Book{TURCOTTE2002,      title = "Preconditioning by Incomplete Block Elimination",
83  author              = { Donald L. Turcotte and Gerald Schubert },      journal = "J. of Num. Lin. Alg. with Appl.",
84  title               = {Geodynamics},      year = "2000",
85  year                = 2002,      note = "to appear"
86  publisher           = { Cambridge University Press },  }
87  edition             = {Second}  
88  }  @Book{ VTK,
89        author = "Inc {The Kitware}",
90  @Article{MORESI2003,      title = "Visualization Toolkit User's Guide.",
91  author              = { L. Moresi and F. Dufour and H. \-B. M      publisher = "Kitware, Inc publishers.",
92  {\"u}hlhaus },      year = "1971",
93  title               = { A {Lagrangian} integration point finite element      address = "London",
94  method for      edition = "second"
95                          large deformation modeling of viscoelastic  }
96  geomaterials  
97  },  @Article{ BOURGOUIN2006,
98  journal             = { Journal of Computational Physics },      author = "L. Bourgouin and H. Muhlhaus and A. J. Hale and A. Arsac",
99  number              = 184,      title = "Towards realistic simulations of lava dome growth using the level set method",
100  pages               = { 476--497 },      journal = "Acta Geotechnica",
101  year                = 2003      year = "2006",
102  }      volume = "1",
103        number = "4",
104  @ARTICLE{GROSZ99c,      pages = "225--236"
105    AUTHOR  = {L.~Grosz},  }
106    TITLE   = {Preconditioning by Incomplete Block Elimination},  
107    JOURNAL = {J. of Num. Lin. Alg. with Appl.},  @Article{ SUSSMAN1994,
108    YEAR    = {2000},      author = "M. Sussman and P. Smereka and S. Osher",
109    NOTE    = {to appear}   }      title = "A Level Set Approach for Computing Solutions to Incompressible Two-Phase Flow",
110  % VOLUME  = {1},      journal = "Journal of Computational Physics",
111  % NUMBER  = {1},      year = "1994",
112  % PAGES   = {3--17},      volume = "114",
113        pages = "146--159"
114  @BOOK{VTK,  }
115  AUTHOR  = {The Kitware, Inc},  
116  TITLE={Visualization Toolkit User's Guide.},  @Article{ LIN2005,
117  PUBLISHER = {Kitware, Inc publishers.},      author = "C. Lin and H. Lee and T. Lee and L. J. Weber",
118  YEAR    = {1971},      title = "A Level Set Characteristic Galerkin Finite Element Method for Free Surface Flows",
119  ADDRESS = {London},      journal = "International Journal for Numerical Methods in Fluids",
120  EDITION = {second},      year = "2005",
121  NOTE    = {}   }      volume = "49",
122        pages = "521--547"
123  %level set stuff  }
124    
125  @ARTICLE{BOURGOUIN2006,  @Article{ SUCKALE2008,
126    AUTHOR  = {L. Bourgouin and H. Muhlhaus and A. J. Hale and A. Arsac},      author = "J. Suckale and J. C. Have",
127    TITLE   = {Towards realistic simulations of lava dome growth using the level set method},      title = "An alternative numerical model of buoyancy driven flows",
128    JOURNAL = {Acta Geotechnica},      year = "2008",
129    YEAR    = {2006},      pages = "1--43"
130   VOLUME  = {1},  }
131   NUMBER  = {4},  
132   PAGES   = {225--236}}  @Article{ GROSS2006,
133        author = "L. Gross and L. Bourgouin and A. J. Hale and H.-B Muhlhaus",
134        title = "Interface Modeling in Incompressible Media using Level Sets in Escript",
135  @ARTICLE{SUSSMAN1994,      journal = "Physics of the Earth and Planetary Interiors",
136    AUTHOR  = {M. Sussman and P. Smereka and S. Osher},      year = 2007,
137    TITLE   = {A Level Set Approach for Computing Solutions to Incompressible Two-Phase Flow},      volume = "163",
138    JOURNAL = {Journal of Computational Physics},      pages = "23--34",
139    YEAR    = {1994},      month = "Aug.",
140   VOLUME  = {114},      doi = "doi:10.1016/j.pepi.2007.04.004"
141   NUMBER  = {},  }
142   PAGES   = {146--159}}  
143    @Article{ VANKEKEN1997,
144        author = "P. E. {van Keken} and S. D. King and H. Schmeling and U. R. Christensen and D. Neumeister and M. P. Doin",
145  @ARTICLE{LIN2005,      title = "A comparison of methods for the modeling of thermochemical convection",
146    AUTHOR  = {C. Lin and H. Lee and T. Lee and L. J. Weber},      journal = "J. Geophys. Res.",
147    TITLE   = {A Level Set Characteristic Galerkin Finite Element Method for Free Surface Flows},      year = "1997",
148    JOURNAL = {International Journal for Numerical Methods in Fluids},      volume = "102",
149    YEAR    = {2005},      number = "B10",
150   VOLUME  = {49},      pages = "22477--22495"
151   NUMBER  = {},  }
152   PAGES   = {521--547}}  
153    @Article{ AAMIRBERKYAN2008,
154        author = "A. Amirberkyan and L. Gross",
155  @ARTICLE{SUCKALE2008,      title = "Efficient Solvers for Incompressible Fluid Flows in Geosciences",
156    AUTHOR  = {J. Suckale and J. C. Have},      journal = "ANZIAM Journal",
157    TITLE   = {An alternative numerical model of buoyancy driven flows},      year = "2008",
158    JOURNAL = {},      volume = "50",
159    YEAR    = {2008},      pages = "C189--C203"
160   VOLUME  = {},  }
161   NUMBER  = {},  
162   PAGES   = {1--43}}  @Article{ MBENZI2005,
163        author = "M. Benzi and G. H. Golub and J. Liesen",
164        title = "Numerical solution of saddle point problems",
165  @ARTICLE{GROSS2006,      journal = "Acta Numerica",
166    AUTHOR  = {L. Gross and L. Bourgouin and A. J. Hale and H.-B Muhlhaus},      year = "2005",
167    TITLE   = {Interface Modeling in Incompressible Media using Level Sets in Escript},      volume = "14",
168    JOURNAL = {Physics of the Earth and Planetary Interiors},      pages = "1--137"
169    YEAR    = {2006},  }
170   VOLUME  = {163},  
171   NUMBER  = {1-4},  @Misc{ OPENDX,
172   PAGES   = {23--34}}      key = "opendx",
173        title = "{OpenDX}",
174        howpublished = "http://www.opendx.org/",
175  @ARTICLE{VANKEKEN1997,      url = "http://www.opendx.org/"
176    AUTHOR  = {P. E. van Keken and S. D. King and H. Schmeling and U. R. Christensen and D. Neumeister and M. P. Doin},  }
177    TITLE   = {A comparison of methods for the modeling of thermochemical convection},  
178    JOURNAL = {J. Geophys. Res.},  @Misc{ netCDF,
179    YEAR    = {1997},      key = "netcdf",
180   VOLUME  = {102},      title = "{netCDF}",
181   NUMBER  = {B10},      howpublished = "http://www.unidata.ucar.edu/software/netcdf",
182   PAGES   = {22477--22495}}      url = "http://www.unidata.ucar.edu/software/netcdf"
183    }
184    
185  %models  @Misc{ UMFPACK,
186        key = "umfpack",
187        howpublished = "http://www.cise.ufl.edu/research/sparse/umfpack/",
188  @ARTICLE{AAMIRBERKYAN2008,      url = "http://www.cise.ufl.edu/research/sparse/umfpack/"
189    AUTHOR  = {A. Amirberkyan and L. Gross},  }
190    TITLE   = {Efficient Solvers for Incompressible Fluid Flows in Geosciences},  
191    JOURNAL = {},  @Misc{ MKL,
192    YEAR    = {2008},      key = "MKL",
193   VOLUME  = {},      title = "INTEL's Math Kernel Library"
194   NUMBER  = {},  }
195   PAGES   = {}}  
196    @Misc{ VisIt,
197        key = "visit",
198  @ARTICLE{MBENZI2005,      title = "{VisIt}",
199    AUTHOR  = {M. Benzi and G. H. Golub and J. Liesen},      howpublished = "https://wci.llnl.gov/codes/visit/home.html",
200    TITLE   = {Numerical solution of saddle point problems},      url = "https://wci.llnl.gov/codes/visit/home.html"
201    JOURNAL = {Acta Numerica},  }
202    YEAR    = {2005},  
203   VOLUME  = {14},  @Misc{ OPENMP,
204   NUMBER  = {},      key = "openmp",
205   PAGES   = {1--137}}      title = "{OpenMP}",
206        howpublished = "http://openmp.org",
207        url = "http://openmp.org"
208  % software cites  }
209    
210  @Misc{OPENDX,  @Misc{ MPI,
211  OPTkey = {},      key = "mpi",
212  OPTauthor = {},      title = "{MPI}",
213  title = {{OpenDX}},      howpublished = "http://www.mpi-forum.org",
214  howpublished = {http://www.opendx.org/},      url = "http://www.mpi-forum.org"
215  OPTmonth = {},  }
216  OPTyear = {},  
217  OPTnote = {},  @Book{ LBB,
218  OPTannote = {},      author = "V. Girault and P. A. Raviart",
219  url = {http://www.opendx.org/},      title = "Finite Element Methods for Navier-Stokes Equations- Theory and Algorithms",
220  OPTdoi = {},      publisher = "Springer Verlag, Berlin",
221  OPTissn = {},      year = 1986
222  OPTlocalfile = {},  }
223  OPTabstract = {}  
224  }  @Misc{ SCSL,
225        title = "SCSL (Scientific Computing Software Library)",
226  @Misc{netCDF,      url = "http://www.sgi.com/products/software/irix/scsl.html"
227  OPTkey = {},  }
228  OPTauthor = {},  
229  title = {{netCDF}},  @Manual{ GMSH,
230  howpublished = {http://www.unidata.ucar.edu/software/netcdf/},      title = "Gmsh Reference Manual",
231  OPTmonth = {},      author = "Christophe Geuzaine and Jean-Francois Remacle",
232  OPTyear = {},      edition = "1.12",
233  OPTnote = {},      month = "Aug",
234  OPTannote = {},      year = 2003,
235  url = {http://www.unidata.ucar.edu/software/netcdf/},      url = "http://www.geuz.org/gmsh"
236  OPTdoi = {},  }
237  OPTissn = {},  
238  OPTlocalfile = {},  @Article{ RILU,
239  OPTabstract = {}      author = "B. Suchomel {Y. Saad}",
240  }      title = "ARMS: an algebraic recursive multilevel solver for general sparse linear systems",
241        journal = "Numerical Linear Algebra with Applications",
242  @Misc{UMFPACK,      year = 2002,
243  OPTkey = {},      volume = "9",
244  OPTauthor = {},      number = 5,
245  OPTtitle = {},      pages = "1099--1506"
246  howpublished = {http://www.cise.ufl.edu/research/sparse/umfpack/},  }
247  OPTmonth = {},  
248  OPTyear = {},  @Misc{ RIGHTHANDRULE,
249  OPTnote = {},      title = "Right-hand rule",
250  OPTannote = {},      howpublished = "http://en.wikipedia.org/wiki/Right-hand_rule",
251  url = {http://www.cise.ufl.edu/research/sparse/umfpack/},      url = "http://en.wikipedia.org/wiki/Right-hand_rule"
252  OPTdoi = {},  }
253  OPTissn = {},  
254  OPTlocalfile = {},  @Misc{ TETGEN,
255  OPTabstract = {}      title = "TetGen: A Quality Tetrahedral Mesh Generator and Three-Dimensional Delaunay Triangulator",
256  }      author = "Hang Si",
257        month = "Jan",
258        year = 2008,
259  @Misc{MKL,      howpublished = "http://tetgen.berlios.de",
260  OPTkey = {},      url = "http://tetgen.berlios.de"
261  OPTauthor = {},  }
262  title = {INTEL's Math Kernel Library},  
263  howpublished = {},  @Misc{ NETGEN,
264  OPTmonth = {},      title = "Netgen 1.4",
265  OPTyear = {},      author = "Tim Edwards",
266  OPTnote = {},      howpublished = "http://opencircuitdesign.com/netgen/",
267  OPTannote = {},      url = "http://opencircuitdesign.com/netgen/"
268  OPTurl = {},  }
269  OPTdoi = {},  
270  OPTissn = {},  @Article{ ELMAN,
271  OPTlocalfile = {},      author = "Howard Elman David Kay {David Silvester} and Andrew Wathen",
272  OPTabstract = {}      title = "Efficient Preconditioning of the Linearized Navier-Stokes Equations",
273  }      journal = "Journal of Computational and Applied Mathematics",
274        year = 2001,
275        number = 128,
276  @Misc{VisIt,      pages = "261--279"
277  OPTkey = {},  }
278  OPTauthor = {},  
279  title = {{VisIt}},  @Article{ LEASTSQUARESFEM1994,
280  howpublished = {https://wci.llnl.gov/codes/visit/home.html},      author = "A. I. Pehlivanov and G. F. Carey and R. D. Lazarov",
281  OPTmonth = {},      title = "Least-Squares Mixed Finite Elements for Second-Order Elliptic Problems",
282  OPTyear = {},      journal = "SIAM Journal on Numerical Analysis",
283  OPTnote = {},      year = 1994,
284  OPTannote = {},      volume = "31",
285  url = {https://wci.llnl.gov/codes/visit/home.html},      number = 5,
286  OPTdoi = {},      pages = "1368--1377",
287  OPTissn = {},      month = "October"
288  OPTlocalfile = {},  }
289  OPTabstract = {}  
290    @Article{ Muhlhaus2005,
291        author = "Hans-Bernd; Regenauer-Lieb Klaus Muhlhaus",
292        title = "Towards a self-consistent plate mantle model that includes elasticity: simple benchmarks and application to basic modes of convection",
293        journal = "Geophysical Journal International",
294        year = 2005,
295        volume = "163",
296        number = 2,
297        pages = "788--800(13)",
298        month = "November"
299    }
300    
301    @Manual{ NUMPY,
302        title = "Numpy and Scipy Documentation",
303        url = "http://docs.scipy.org/doc/",
304        howpublished = "http://docs.scipy.org/doc/",
305        author = "Scipy Community"
306    }
307    
308    @Manual{ matplotlib,
309        title = "matplotlib",
310        author = "John Hunter and Michael Droettboom and Darren Dale",
311        month = "July",
312        year = "2009",
313        howpublished = "http://matplotlib.sourceforge.net/",
314        url = "http://matplotlib.sourceforge.net/"
315    }
316    
317    @Manual{ mayavi,
318        title = "Mayavi2: The next generation scientific data visualization",
319        year = "2009",
320        howpublished = "https://svn.enthought.com/enthought/wiki/MayaVi",
321        url = "https://svn.enthought.com/enthought/wiki/MayaVi"
322    }
323    
324    @Misc{ gnuplot,
325        title = "gnuplot homepage",
326        author = "Thomas Williams and Colin Kelley",
327        month = mar,
328        year = "2009",
329        howpublished = "http://www.gnuplot.info/",
330        url = "http://www.gnuplot.info/"
331    }
332    
333    @Manual{ SCIPY,
334        title = "Numpy and Scipy Documentation",
335        author = "The Scipy community",
336        howpublished = "http://docs.scipy.org/doc/",
337        url = "http://docs.scipy.org/doc/"
338    }
339    
340    @Misc{ SCSL,
341            title = "SCSL (Scientific Computing Software Library)",
342            howpublished = "http://www.sgi.com/products/software/irix/scsl.html",
343            url = "http://www.sgi.com/products/software/irix/scsl.html"
344    }
345    
346    @Misc{ IDEAS,
347           title = "I_DEAS",
348           howpublished = "http://www.plm.automation.siemens.com/en_us/products/nx/",
349           url = "http://www.plm.automation.siemens.com/en_us/products/nx/"
350    }
351    @Misc{ VRML,
352            title = "VRML",
353           howpublished = "http://www.w3.org/MarkUp/VRML/",
354           url = "http://www.w3.org/MarkUp/VRML/"
355    }
356    @Misc{ STL,
357            title = "STL",
358           howpublished = "http://en.wikipedia.org/wiki/STL_(file_format)",
359           url = "http://en.wikipedia.org/wiki/STL_(file_format)"
360    }
361    @Misc{ NASTRAN,
362            title = "Nastran",
363           howpublished = "http://simcompanion.mscsoftware.com/",
364           url = "http://simcompanion.mscsoftware.com/"
365    }
366    @Misc{ MEDIT,
367            title = "Medit",
368           howpublished = "http://www-rocq.inria.fr/OpenFEM/Doc/",
369           url = "http://www-rocq.inria.fr/OpenFEM/Doc/"
370    }
371    @Misc{ CGNS,
372            title = "CGNS",
373           howpublished = "http://cgns.sourceforge.net/",
374           url = "http://cgns.sourceforge.net/"
375    }
376    @Misc{ PLOT3D,
377            title = "Plot3D",
378           howpublished = "http://www.plot3d.net/",
379           url = "http://www.plot3d.net/"
380    }
381    @Misc{ DIFFPACK,
382            title = "Diffpack",
383           howpublished = "http://www.diffpack.com/",
384           url = "http://www.diffpack.com/"
385    }
386    
387    @InProceedings{lazyauspdc,
388    author = {Joel Fenwick and Lutz Gross},
389    title = {Lazy Evaluation of PDE Coefficients in the EScript System},
390    booktitle = {Parallel and Distributed Computing 2010 (AusPDC2010)},
391    pages = {71--76},
392    year = {2010},
393    editor = {Jinjun Chen and Rajiv Ranjan},
394    volume = {107},
395    series = {Conferences in Research and Practice in Information Technology},
396    month = {January},
397    issn = {1445-1336}
398  }  }
399    

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