/[escript]/trunk/doc/user/guide_defs.tex
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Revision 653 - (hide annotations)
Fri Mar 24 07:34:34 2006 UTC (13 years, 8 months ago) by gross
File MIME type: application/x-tex
File size: 11113 byte(s)
linearPDE docu fixed
1 jgs 82 % $Id$
2 gross 625 %
3     % Copyright © 2006 by ACcESS MNRF
4     % \url{http://www.access.edu.au
5     % Primary Business: Queensland, Australia.
6     % Licensed under the Open Software License version 3.0
7     % http://www.opensource.org/licenses/osl-3.0.php
8     %
9 jgs 82
10 gross 625
11 jgs 82 \usepackage{epsfig}
12     \usepackage{graphicx,color}
13     \usepackage{makeidx} % handle the index properly
14     \usepackage{xspace} % handle spaces after commands more nicely
15     % use the ams math stuff, as it makes the maths easier to code, and
16     % nicer output than the standard LaTeX stuff
17     \usepackage{amsmath,amsfonts,amssymb} % this is handy for mathematicians and physicists
18     % see http://www.ams.org/tex/amslatex.html
19     \usepackage{alltt} % handy verbatim stuff
20    
21    
22     % define some handy commands for escript stuff
23 gross 565 \newcommand{\LINUX}{{\it Linux}\xspace}
24 jgs 107 \newcommand{\escript}{\module{esys.escript}\xspace}
25     \newcommand{\finley}{\module{esys.finley}\xspace}
26 gross 606 \newcommand{\bruce}{\module{esys.bruce}\xspace}
27 gross 565 \newcommand{\pyvisi}{\module{esys.pyvisi}\xspace}
28    
29     \newcommand{\linearPDEs}{\module{esys.escript.linearPDEs}\xspace}
30 jgs 102 \newcommand{\LinearPDE}{\class{LinearPDE}\xspace}
31 jgs 121 \newcommand{\timeseries}{\module{esys.timeseries}\xspace}
32     \newcommand{\modelframe}{\module{esys.modelframe}\xspace}
33     \newcommand{\pdetools}{\module{esys.pdetools}\xspace}
34 gross 565
35 jgs 102 \newcommand{\AdvectivePDE}{\class{AdvectivePDE}\xspace}
36     \newcommand{\Poisson}{\class{Poisson}\xspace}
37 gross 568 \newcommand{\Helmholtz}{\class{Helmholtz}\xspace}
38 gross 653 \newcommand{\Lame}{\class{Lame}\xspace}
39 jgs 82 \newcommand{\Data}{\class{Data}\xspace}
40 jgs 102 \newcommand{\EmptyData}{empty \class{Data} \index{empty Data}\xspace}
41     \newcommand{\Domain}{\class{Domain}\xspace}
42 gross 599 \newcommand{\VTK}{{\it vtk} \cite{VTK}\index{visualization!vtk}\index{vtk}}
43 gross 606 \newcommand{\GnuPlot}{{\it gnuplot} \cite{GNUPLOT}\index{visualization!gnuplot}\index{gnuplot}}
44 gross 565 \newcommand{\mayavi}{{\it mayavi} \index{visualization!mayavi}\index{mayavi}}
45 gross 599 \newcommand{\OpenDX}{{\it OpenDX} \cite{OPENDX}\xspace}
46 jgs 102 \newcommand{\finleyelement}[1]{{\it #1}\index{finley!#1}}
47     \newcommand{\False}{\constant{False}\xspace}
48     \newcommand{\True}{\constant{True}\xspace}
49 gross 653 \newcommand{\PCG}{\constant{LinearPDE.PCG}\xspace\index{linear solver!PCG}\index{PCG}}
50     \newcommand{\BiCGStab}{\constant{LinearPDE.BICGSTAB}\xspace\index{linear solver!BiCGStab}\index{BiCGStab}}
51     \newcommand{\Direct}{\constant{LinearPDE.DIRECT}\xspace\index{linear solver!Direct}\index{Direct solver}}
52     \newcommand{\GMRES}{\constant{LinearPDE.GMRES}\xspace\index{linear solver!GMRES}\index{GMRES}}
53     \newcommand{\PRESTWENTY}{\constant{LinearPDE.PRES20}\xspace\index{linear solver!PRES20}\index{PRES20}}
54     \newcommand{\JACOBI}{\constant{LinearPDE.JACOBI}\xspace\index{preconditioner!Jacobi}\index{Jacobi}}
55     \newcommand{\ILU}{\constant{LinearPDE.ILU0}\xspace\index{preconditioner!ILU0}\index{ILU0}}
56     \newcommand{\ILUT}{\constant{LinearPDE.ILUT}\xspace\index{preconditioner!ILUT}\index{ILUT}}
57     \newcommand{\LUMPING}{\constant{LinearPDE.LUMPING}\xspace\index{linear solver!lumping}\index{lumping}}
58     \newcommand{\NOREORDERING}{\constant{LinearPDE.NO\hackscore REORDERING}\xspace}
59     \newcommand{\MINIMUMFILLIN}{\constant{LinearPDE.MINIMUM\hackscore FILL\hackscore IN}\xspace\index{linear solver!minimum fill-in ordering}\index{minimum fill-in ordering}}
60     \newcommand{\NESTEDDESCTION}{\constant{LinearPDE.NESTED\hackscore DISSECTION}\xspace\index{linear solver!nested dissection ordering}\index{nested dissection}}
61 jgs 82
62 gross 606 \newcommand{\Scene}{\class{Scene}\xspace}
63    
64 jgs 102 \newcommand{\FunctionSpace}{\class{FunctionSpace}\xspace}
65     \newcommand{\Operator}{\class{Operator}\xspace}
66     \newcommand{\SolutionFS}{solution \class{FunctionSpace}\index{solution}\xspace}
67     \newcommand{\ReducedSolutionFS}{reduced solution \class{FunctionSpace}\index{solution!reduced}\xspace}
68     \newcommand{\FunctionOnBoundary}{boundary \class{FunctionSpace}\xspace}
69     \newcommand{\Function}{general \class{FunctionSpace}\xspace}
70     \newcommand{\FunctionOnContactZero}{contact \class{FunctionSpace} on side 0\xspace}
71     \newcommand{\FunctionOnContactOne}{contact \class{FunctionSpace} on side 1\xspace}
72     \newcommand{\ContinuousFunction}{continuous \class{FunctionSpace}\xspace}
73 gross 565 \newcommand{\RankOne}{{rank-1 \Data object}\xspace}
74 jgs 102 \newcommand{\RankTwo}{{rank-2 \Data object}\xspace}
75     \newcommand{\RankThree}{{rank-3 \Data object}\xspace}
76     \newcommand{\RankFour}{{rank-4 \Data object}\xspace}
77     \newcommand{\Scalar}{{scalar \Data object}\xspace}
78     \newcommand{\DataSample}{{data sample} \index{data sample}\xspace}
79     \newcommand{\DataSamplePoints}{{data sample points} \index{data sample!points}\xspace}
80     \newcommand{\numarray}{\module{numarray}\xspace}
81     \newcommand{\Shape}{shape\xspace\index{shape}}
82 gross 565 \newcommand{\Rank}{rank\xspace\index{shape}}
83 jgs 102 \newcommand{\ExampleDirectory}{example directory\xspace}
84 gross 593 \newcommand{\ReferenceGuide}{\url{http://www.iservo.edu.au/esys/epydoc/index.html}}
85 jgs 102
86    
87    
88 gross 593
89 jgs 82 % default width for figures
90     \newcommand{\figwidth}{100mm}
91     % commands useful in cross-referencing
92     \newcommand {\Ref}[1] {Reference~\cite{#1}}
93     \newcommand {\Sec}[1] {Section~\ref{#1}}
94     \newcommand {\App}[1] {Appendix~\ref{#1}}
95     \newcommand {\Chap}[1] {Chapter~\ref{#1}}
96     \newcommand {\etal} {\emph{~et~al.}}
97     \newcommand {\fig}[1] {Figure~\ref{#1}}
98     \newcommand {\eqn}[1] {Equation~(\ref{#1})}
99     \newcommand {\tab}[1] {Table~\ref{#1}}
100    
101 jgs 102 % this stops one figure taking up a whole page and lets more text onto
102     % the one page when a figure exists
103     \renewcommand{\floatpagefraction}{0.8} % Default = 0.5
104    
105 jgs 82 % improved version of caption handling
106     \usepackage{ccaption}
107     \captionnamefont{\scshape}
108     \captionstyle{}
109     \makeatletter
110     \renewcommand{\fnum@figure}[1]{\quad\small\textsc{\figurename~\thefigure}:}
111     \renewcommand{\@makecaption}[2]{%
112     \vskip\abovecaptionskip
113     \sbox\@tempboxa{#1: #2}%
114     \ifdim \wd\@tempboxa >\hsize
115     \def\baselinestretch{1}\@normalsize
116     #1: #2\par
117     \def\baselinestretch{1.5}\@normalsize
118     \else
119     \global \@minipagefalse
120     \hb@xt@\hsize{\hfil\box\@tempboxa\hfil}%
121     \fi
122     \vskip\belowcaptionskip}
123     \makeatother
124    
125 gross 572 % \usepackage{fancyvrb} % fancy verbatim stuff. Needed so code below goes
126 jgs 82 %%% this code grabbed from the PyScript docs
127     %%% pyscript.sourceforge.net
128    
129     % --------------------------------------------------------------
130     % Code format within \Verb
131     % --------------------------------------------------------------
132    
133 gross 572 % \definecolor{pycolor}{rgb}{0,0.4,0}
134 jgs 82
135 jgs 102 %% \DefineVerbatimEnvironment{python}{Verbatim}
136     %% {frame=leftline,framerule=.5mm,rulecolor=\color{pycolor},
137     %% formatcom=\color{pycolor}\small,fontshape=rm}
138 jgs 82
139     %\DefineShortVerb[formatcom=\color{dgreen}\small,fontshape=sl]{\|}
140    
141 gross 572 % \RecustomVerbatimCommand{\Verb}{Verb}{formatcom=\color{pycolor}\small,fontshape=rm}
142 jgs 82
143     %%% end of grabbed code
144    
145     % this is for when one uses pdflatex and therefore needs to load pdf
146     % figures into \includegraphics
147     \ifpdf
148     \DeclareGraphicsExtensions{.pdf} % this command defined in graphicx
149     \pdfcompresslevel=9 % 0: no compression, 9: highest compression
150     % or, set compress_level 9 in file pdftex.cfg
151     \else
152     \DeclareGraphicsExtensions{.eps}
153     \fi
154 jgs 102
155     % defines the colour for the background of code examples
156     \definecolor{LightGrey}{gray}{0.9}
157    
158     % add the listings package to pretty print the code output
159     \usepackage{listings}
160    
161     \lstdefinestyle{myC++}{%
162     %\lstset{%
163     language=C++,
164     showstringspaces=false,
165     basicstyle=\small\ttfamily,
166     commentstyle=\color[named]{BrickRed}\ttfamily,
167     keywordstyle=\color[named]{Purple}\ttfamily,
168     %identifierstyle=\color[named]{Blue}\ttfamily,
169     %functionstyle=\color[named]{Blue}\ttfamily,
170     %typestyle=\color[named]{ForestGreen}\ttfamily,
171     stringstyle=\color[named]{Tan}\ttfamily,%
172     morekeywords={,complex,}%
173     frame=none,%
174     backgroundcolor=\color{LightGrey}%
175     }
176    
177     \lstdefinestyle{myMatlab}{%
178     %\lstset{%
179     language=Matlab,
180     showstringspaces=false,
181     basicstyle=\small\ttfamily,
182     commentstyle=\color[named]{BrickRed}\ttfamily,
183     keywordstyle=\color[named]{Purple}\ttfamily,
184     %identifierstyle=\color[named]{Blue}\ttfamily,
185     %functionstyle=\color[named]{Blue}\ttfamily,
186     %typestyle=\color[named]{ForestGreen}\ttfamily,
187     stringstyle=\color[named]{Tan}\ttfamily,%
188     frame=none,%
189     backgroundcolor=\color{LightGrey}%
190     }
191    
192     \lstdefinestyle{myScilab}{%
193     %\lstset{%
194     language=Scilab,
195     showstringspaces=false,
196     basicstyle=\small\ttfamily,
197     commentstyle=\color[named]{BrickRed}\ttfamily,
198     keywordstyle=\color[named]{Purple}\ttfamily,
199     %identifierstyle=\color[named]{Blue}\ttfamily,
200     %functionstyle=\color[named]{Blue}\ttfamily,
201     %typestyle=\color[named]{ForestGreen}\ttfamily,
202     stringstyle=\color[named]{Tan}\ttfamily,%
203     frame=none,%
204     backgroundcolor=\color{LightGrey}%
205     }
206    
207     \lstdefinestyle{myShell}{%
208     %\lstset{%
209     language=ksh,
210     showstringspaces=false,
211     basicstyle=\small\ttfamily,
212     commentstyle=\color[named]{Black}\ttfamily,
213     keywordstyle=\color[named]{Black}\ttfamily,
214     %identifierstyle=\color[named]{Blue}\ttfamily,
215     %functionstyle=\color[named]{Blue}\ttfamily,
216     %typestyle=\color[named]{ForestGreen}\ttfamily,
217     stringstyle=\color[named]{Black}\ttfamily,%
218     frame=none,%
219     backgroundcolor=\color{LightGrey}%
220     }
221    
222     \lstdefinestyle{myPython}{%
223     %\lstset{%
224     language=python,
225     showstringspaces=false,
226     basicstyle=\small\ttfamily,
227     commentstyle=\color[named]{BrickRed}\ttfamily,
228     keywordstyle=\color[named]{Purple}\ttfamily,
229     %identifierstyle=\color[named]{Blue}\ttfamily,
230     %functionstyle=\color[named]{Blue}\ttfamily,
231     %typestyle=\color[named]{ForestGreen}\ttfamily,
232     stringstyle=\color[named]{Tan}\ttfamily,%
233     frame=none,%
234     %backgroundcolor=\color{LightGrey}%
235     }
236    
237     \lstdefinestyle{myhtml}{%
238     %\lstset{%
239     language=xml,
240     showstringspaces=false,
241     basicstyle=\small\ttfamily,
242     commentstyle=\color[named]{BrickRed}\ttfamily,
243     keywordstyle=\color[named]{Purple}\ttfamily,
244     %identifierstyle=\color[named]{Blue}\ttfamily,
245     %functionstyle=\color[named]{Blue}\ttfamily,
246     %typestyle=\color[named]{ForestGreen}\ttfamily,
247     stringstyle=\color[named]{Tan}\ttfamily,
248     morekeywords={,simulation,prop_dim,error_check,stochastic,%
249     globals,field,dimensions,lattice,domains,samples,vector,%
250     components,fourier_space,sequence,integrate,algorithm,%
251     interval,k_operators,constant,operator_names,vectors,%
252     output,filename,group,sampling,moments,benchmark,use_double,%
253     use_wisdom,use_prefs,binary_output,cycles,filter,post_propagation,%
254     default_value,argv,arg,iterations,cross_propagation,%
255     use_mpi,paths,seed,noises,author,description,name,type,%
256     }
257     frame=none,%
258     %framerule=2pt,%
259     backgroundcolor=\color{LightGrey}%
260     }
261    
262     % this implements producing nice code blocks
263     % it also saves time, typing and
264     % *should* reduce errors in the text by removing doubling up of code
265     \lstnewenvironment{xmdsCode}[1][]{\lstset{style=myhtml}\lstset{#1}}{}
266    
267     % this implements nicely formatted shell code
268     \lstnewenvironment{shellCode}[1][]{\lstset{style=myShell}\lstset{#1}}{}
269    
270     % this implements nicely formatted Perl code
271     \lstnewenvironment{perlCode}[1][]{\lstset{style=myPerl}\lstset{#1}}{}
272    
273     % this implements nicely formatted Python code
274     \lstnewenvironment{python}[1][]{\lstset{style=myPython}\lstset{#1}}{}
275    
276     % this implements nicely formatted C++ code
277     \lstnewenvironment{CCode}{\lstset{style=myC++}}{}
278    
279     % this implements nicely formatted matlab code
280     \lstnewenvironment{matlabCode}{\lstset{style=myMatlab}}{}
281    
282     % this implements nicely formatted scilab code
283     \lstnewenvironment{scilabCode}{\lstset{style=myScilab}}{}
284    

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