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Revision 6387 - Directory Listing
Modified Mon Jul 25 06:11:40 2016 UTC (16 months, 3 weeks ago) by caltinay
removed deprecated symbol, fixes #325


Revision 6385 - Directory Listing
Modified Mon Jul 25 03:17:21 2016 UTC (16 months, 3 weeks ago) by caltinay
trying to fix remaining test failures which would have always failed but
only now are we actually running direct solvers under MPI...


Revision 6381 - Directory Listing
Modified Fri Jul 22 09:12:46 2016 UTC (16 months, 3 weeks ago) by caltinay
changed some assertions so we get a better idea of values.

Not sure why current tests fail, some issues with Mumps?!


Revision 6380 - Directory Listing
Modified Fri Jul 22 06:32:45 2016 UTC (16 months, 3 weeks ago) by caltinay
enable more tests that were skipped due to trilinos limitations.


Revision 6361 - Directory Listing
Modified Wed Jul 6 04:10:30 2016 UTC (17 months, 1 week ago) by caltinay
change solver tolerance for joint inversion test which takes too long with Lazy.


Revision 6326 - Directory Listing
Modified Thu Jun 23 10:32:39 2016 UTC (17 months, 3 weeks ago) by caltinay
more Amesos2 skips.


Revision 6324 - Directory Listing
Modified Thu Jun 23 06:26:22 2016 UTC (17 months, 3 weeks ago) by caltinay
fix.


Revision 6321 - Directory Listing
Modified Thu Jun 23 05:38:50 2016 UTC (17 months, 3 weeks ago) by caltinay
feature #3: this should fix up remaining tests that only checked paso_direct.
I also moved paso_direct to 'hasFeature' as it's a boolean...


Revision 6296 - Directory Listing
Modified Thu Jun 16 23:58:54 2016 UTC (17 months, 4 weeks ago) by caltinay
don't claim to have paso direct solvers without paso.
Fix tests accordingly as well.


Revision 6210 - Directory Listing
Modified Mon May 16 08:42:05 2016 UTC (19 months ago) by caltinay
more test adjustments.


Revision 6177 - Directory Listing
Modified Fri Apr 15 08:26:07 2016 UTC (20 months ago) by caltinay
fixed typo


Revision 6174 - Directory Listing
Modified Fri Apr 15 03:41:03 2016 UTC (20 months ago) by caltinay
Some reorganisation of EscriptParams and related changes.
We now distinguish between modifiable parameters and build features.
To interrogate the latter use:
escript::hasFeature()  [ python: escript.hasFeature() ]
and
escript::listFeatures() [ python: escript.listFeatures() ]

I have decided to add specific getters for the remaining few parameters to
avoid the penalty of string comparisons and to remove the wealth of friend
declarations with Data* classes.

Also made some changes in SConstruct to make sure we set *all* preprocessor
directives *before* building anything.

Still to do is dealing with checks for direct solver and gmsh. The latter needs
to be a runtime check rather than a compile time check.


Revision 6112 - Directory Listing
Modified Thu Mar 31 09:40:10 2016 UTC (20 months, 2 weeks ago) by jfenwick
Relicense all the things!



Revision 6034 - Directory Listing
Modified Wed Mar 9 00:37:57 2016 UTC (21 months, 1 week ago) by caltinay
a few changes to GroupTest / utest:
GroupTest class now takes a name parameter that is used as (shell) function
name in utest for the test group.
By default all tests are run as before but one can now do:
./utest.sh build '-t2' escriptcpp
to only run the escript c++ unit tests.
Also tweaked a couple things so utest.sh does now work with dash.


Revision 6019 - Directory Listing
Modified Thu Mar 3 04:01:30 2016 UTC (21 months, 2 weeks ago) by caltinay
adjusted number of elements in test so we get results with 20 ranks.


Revision 6015 - Directory Listing
Modified Thu Mar 3 01:56:12 2016 UTC (21 months, 2 weeks ago) by caltinay
try new obspy interface first to silence deprecation warning.


Revision 5863 - Directory Listing
Modified Wed Jan 13 02:25:48 2016 UTC (23 months ago) by jfenwick
Copyright dates updated.
\version for doxygen to read


Revision 5845 - Directory Listing
Modified Fri Nov 27 05:24:13 2015 UTC (2 years ago) by sshaw
removing dud commmented code

Revision 5835 - Directory Listing
Modified Thu Nov 26 07:42:03 2015 UTC (2 years ago) by gross
MT allows now a background field

Revision 5832 - Directory Listing
Modified Thu Nov 26 01:16:43 2015 UTC (2 years ago) by jfenwick
Minor cleanup

Revision 5831 - Directory Listing
Modified Thu Nov 26 00:26:52 2015 UTC (2 years ago) by jfenwick
Produces what looks like correct answers on Jaco's example.

Still to do:
. Clean up extraneous output
. Doco on what the various variables do
. Discussion on difference between this mode and the normal
downunder. (Should the same changes be made to normal downunder?)
. Document more clearly assumptions which have been made. 
  - The only one which comes to mind is the one where only the 
    regularisation term actually matters for one of the calculations.
 


Revision 5830 - Directory Listing
Modified Tue Nov 24 23:55:20 2015 UTC (2 years ago) by jfenwick
not supposed to do that

Revision 5823 - Directory Listing
Modified Wed Nov 4 08:32:50 2015 UTC (2 years, 1 month ago) by jfenwick
Changes for new interface


Revision 5822 - Directory Listing
Modified Fri Oct 30 06:32:34 2015 UTC (2 years, 1 month ago) by jduplessis
turns out x should be because sigmaprim - sigma this is because there is a negative in the x template


Revision 5819 - Directory Listing
Modified Fri Oct 9 04:21:49 2015 UTC (2 years, 2 months ago) by caltinay
and another skip without gmsh.


Revision 5818 - Directory Listing
Modified Fri Oct 9 03:42:53 2015 UTC (2 years, 2 months ago) by caltinay
skip test without gmsh.


Revision 5795 - Directory Listing
Modified Mon Sep 21 03:37:30 2015 UTC (2 years, 2 months ago) by caltinay
Avoid netCDF warning by calling del on local references to mmap'ed data


Revision 5790 - Directory Listing
Modified Wed Sep 9 04:56:37 2015 UTC (2 years, 3 months ago) by jduplessis
wrong order for subtraction. based on ralfs notes.


Revision 5783 - Directory Listing
Modified Wed Sep 2 23:27:34 2015 UTC (2 years, 3 months ago) by caltinay
another non-finley test failure fixed.


Revision 5782 - Directory Listing
Modified Tue Sep 1 06:00:44 2015 UTC (2 years, 3 months ago) by caltinay
added guards for non-finley builds.


Revision 5780 - Directory Listing
Modified Mon Aug 31 05:37:39 2015 UTC (2 years, 3 months ago) by sshaw
makeTranformation deprecated, left as a wrapper of the new makeTransformation

Revision 5775 - Directory Listing
Modified Thu Jul 30 08:01:06 2015 UTC (2 years, 4 months ago) by sshaw
pushing release to trunk

Revision 5760 - Directory Listing
Modified Wed Jul 22 11:30:28 2015 UTC (2 years, 4 months ago) by sshaw
fixing the python3 fix that was fixed for python2 but broke 3

Revision 5758 - Directory Listing
Modified Wed Jul 22 05:25:45 2015 UTC (2 years, 4 months ago) by sshaw
fixing python 3 compatibility change where overriding a type in scope destroys the global type referece completely (result is py2 no longer complaining)

Revision 5756 - Directory Listing
Modified Fri Jul 17 05:20:47 2015 UTC (2 years, 5 months ago) by sshaw
making long as a type work in python3

Revision 5753 - Directory Listing
Modified Fri Jul 17 01:06:22 2015 UTC (2 years, 5 months ago) by sshaw
replacing xrange for py3 compatibility

Revision 5752 - Directory Listing
Modified Fri Jul 17 00:05:18 2015 UTC (2 years, 5 months ago) by sshaw
fixing MT tests for MPI

Revision 5751 - Directory Listing
Modified Wed Jul 15 10:25:45 2015 UTC (2 years, 5 months ago) by jfenwick
Tests and tweaks for magneto-telluric

Revision 5748 - Directory Listing
Modified Wed Jul 15 06:49:05 2015 UTC (2 years, 5 months ago) by sshaw
python3 prints for 2D MT source

Revision 5747 - Directory Listing
Modified Wed Jul 15 06:44:38 2015 UTC (2 years, 5 months ago) by sshaw
tab->space replacements again

Revision 5745 - Directory Listing
Modified Wed Jul 15 03:24:37 2015 UTC (2 years, 5 months ago) by sshaw
python3ifying inequality tests in MT

Revision 5744 - Directory Listing
Modified Wed Jul 15 00:01:00 2015 UTC (2 years, 5 months ago) by jduplessis
somehow ReadGmsh escaped

Revision 5743 - Directory Listing
Modified Tue Jul 14 07:24:22 2015 UTC (2 years, 5 months ago) by jduplessis
removed dcresdomgen

Revision 5742 - Directory Listing
Modified Tue Jul 14 05:52:56 2015 UTC (2 years, 5 months ago) by jduplessis
removal of dcdomaingen from trunk for now


Revision 5740 - Directory Listing
Modified Mon Jul 13 10:28:24 2015 UTC (2 years, 5 months ago) by jfenwick
Remove blanket import of escript into inversions.
Modify __all__ to allow "hiding" some members of escript from a blanket import


Revision 5739 - Directory Listing
Modified Mon Jul 13 07:54:16 2015 UTC (2 years, 5 months ago) by jfenwick
Changing scoping for splitworld internals.
Experiments on hiding them to follow later.



Revision 5738 - Directory Listing
Modified Mon Jul 13 07:52:05 2015 UTC (2 years, 5 months ago) by jfenwick
Added Ralf's examples.
Tests for correctness to follow later.


Revision 5737 - Directory Listing
Modified Mon Jul 13 04:51:55 2015 UTC (2 years, 5 months ago) by jduplessis
updates of test to prepare for removal of dcresdomgen


Revision 5726 - Directory Listing
Modified Wed Jul 8 04:28:55 2015 UTC (2 years, 5 months ago) by jduplessis
commiting updates before removal


Revision 5707 - Directory Listing
Modified Mon Jun 29 03:59:06 2015 UTC (2 years, 5 months ago) by sshaw
adding copyright headers to files without copyright info, moved header to top of file in some cases where it wasn't

Revision 5706 - Directory Listing
Modified Mon Jun 29 03:41:36 2015 UTC (2 years, 5 months ago) by sshaw
all python files now force use of python3 prints and division syntax to stop sneaky errors appearing in py3 environs

Revision 5667 - Directory Listing
Modified Fri Jun 19 04:19:54 2015 UTC (2 years, 5 months ago) by sshaw
stopping example wave scripts from trying to write SEGYs if obspy not installed

Revision 5665 - Directory Listing
Modified Fri Jun 19 02:08:01 2015 UTC (2 years, 5 months ago) by sshaw
cleaning up seismic.py whitespace and fixing spelling mistakes in function names and params, the existing ones have been left with warnings about them being deprecated (createAbsorptionLayerFunction)


Revision 5663 - Directory Listing
Modified Thu Jun 18 07:09:05 2015 UTC (2 years, 5 months ago) by jfenwick
Further progress but still not right

Revision 5661 - Directory Listing
Modified Thu Jun 18 04:15:51 2015 UTC (2 years, 5 months ago) by caltinay
use a placeholder that is more unlikely to be in the real data as suggested
by Jaco.


Revision 5660 - Directory Listing
Modified Thu Jun 18 04:06:31 2015 UTC (2 years, 5 months ago) by caltinay
Fix for #266 - replace NaNs by large number before masking so it
actually works.


Revision 5657 - Directory Listing
Modified Wed Jun 17 07:23:39 2015 UTC (2 years, 6 months ago) by jfenwick
SUM type variables, no longer accumulate forever

Revision 5655 - Directory Listing
Modified Mon Jun 15 06:10:26 2015 UTC (2 years, 6 months ago) by caltinay
Fixed tests.


Revision 5654 - Directory Listing
Modified Mon Jun 15 05:21:00 2015 UTC (2 years, 6 months ago) by jfenwick
further

Revision 5653 - Directory Listing
Modified Mon Jun 15 03:48:49 2015 UTC (2 years, 6 months ago) by caltinay
Implementation for #314. Minimizer callbacks in downunder are now passed
appropriate norm(s) that are used to check for convergence.


Revision 5652 - Directory Listing
Modified Mon Jun 15 02:48:17 2015 UTC (2 years, 6 months ago) by gross
typo fixed

Revision 5651 - Directory Listing
Modified Sun Jun 14 23:24:48 2015 UTC (2 years, 6 months ago) by jfenwick
turns out the consts are important

Revision 5650 - Directory Listing
Modified Sun Jun 14 23:02:39 2015 UTC (2 years, 6 months ago) by sshaw
more xrange->range conversion for python3 compatibility

Revision 5649 - Directory Listing
Modified Sun Jun 14 06:38:00 2015 UTC (2 years, 6 months ago) by jfenwick
Got stuck

Revision 5648 - Directory Listing
Modified Sat Jun 13 04:36:22 2015 UTC (2 years, 6 months ago) by jfenwick
Can now get doubles out of python reducers


Revision 5646 - Directory Listing
Modified Fri Jun 12 04:04:58 2015 UTC (2 years, 6 months ago) by sshaw
some more python3 fixing, better sorting of dicts/sets->lists for some cases

Revision 5645 - Directory Listing
Modified Fri Jun 12 02:56:30 2015 UTC (2 years, 6 months ago) by jfenwick
more

Revision 5644 - Directory Listing
Modified Thu Jun 11 23:50:17 2015 UTC (2 years, 6 months ago) by sshaw
fixing test_getPotential3dSchlumberger syntax errors

Revision 5643 - Directory Listing
Modified Thu Jun 11 22:50:48 2015 UTC (2 years, 6 months ago) by jfenwick
adding set only reducer

Revision 5642 - Directory Listing
Modified Thu Jun 11 07:53:22 2015 UTC (2 years, 6 months ago) by jfenwick
Start on converting _zoom and line_search

Revision 5641 - Directory Listing
Modified Thu Jun 11 05:59:46 2015 UTC (2 years, 6 months ago) by sshaw
adjusted dict->list conversions to be deterministic under python3 (fixes ranks operating on elements in different orders)

Revision 5638 - Directory Listing
Modified Wed Jun 10 03:45:27 2015 UTC (2 years, 6 months ago) by jfenwick
fixing tabs and updating options file

Revision 5637 - Directory Listing
Modified Wed Jun 10 03:34:10 2015 UTC (2 years, 6 months ago) by jfenwick
further

Revision 5635 - Directory Listing
Modified Tue Jun 9 23:41:14 2015 UTC (2 years, 6 months ago) by jfenwick
Some more work on splits. Next target is gradient calculation

Revision 5634 - Directory Listing
Modified Tue Jun 9 00:27:13 2015 UTC (2 years, 6 months ago) by jfenwick
fixing my tab crimes

Revision 5633 - Directory Listing
Modified Fri Jun 5 01:08:43 2015 UTC (2 years, 6 months ago) by jfenwick
And the domestication of the dog continued unabated


Revision 5631 - Directory Listing
Modified Thu Jun 4 07:13:11 2015 UTC (2 years, 6 months ago) by jfenwick
More


Revision 5630 - Directory Listing
Modified Thu Jun 4 06:25:57 2015 UTC (2 years, 6 months ago) by jfenwick
Some work towards split inversion

Revision 5629 - Directory Listing
Modified Thu Jun 4 03:49:45 2015 UTC (2 years, 6 months ago) by jduplessis
temporary increase in tolerance.


Revision 5628 - Directory Listing
Modified Thu Jun 4 01:27:34 2015 UTC (2 years, 6 months ago) by caltinay
fixAboveLevel takes now precedence over fixAtTop as required by TM mode
forward model constructor.


Revision 5626 - Directory Listing
Modified Wed Jun 3 02:21:06 2015 UTC (2 years, 6 months ago) by caltinay
revert obvious unintended comment changes.


Revision 5625 - Directory Listing
Modified Mon Jun 1 05:01:54 2015 UTC (2 years, 6 months ago) by jduplessis
fixed electrodelist


Revision 5624 - Directory Listing
Modified Mon Jun 1 04:49:20 2015 UTC (2 years, 6 months ago) by jduplessis
electrode list rather than dictionary


Revision 5622 - Directory Listing
Modified Thu May 28 02:37:12 2015 UTC (2 years, 6 months ago) by jfenwick
Small improvements towards split inversion


Revision 5607 - Directory Listing
Modified Tue May 5 06:35:41 2015 UTC (2 years, 7 months ago) by caltinay
added missing **2 to MT forward model


Revision 5605 - Directory Listing
Modified Tue May 5 02:13:51 2015 UTC (2 years, 7 months ago) by gross
fix for a more robust setting of an initial value

Revision 5593 - Directory Listing
Modified Fri Apr 24 01:36:26 2015 UTC (2 years, 7 months ago) by jfenwick
Fixing institution name to comply with policy

Revision 5587 - Directory Listing
Modified Mon Apr 20 00:40:57 2015 UTC (2 years, 7 months ago) by caltinay
Fixed a typo in error case.


Revision 5581 - Directory Listing
Modified Tue Apr 7 06:25:20 2015 UTC (2 years, 8 months ago) by jduplessis
fixed missing self.__w for when w is a list rather than a float


Revision 5580 - Directory Listing
Modified Tue Apr 7 04:25:01 2015 UTC (2 years, 8 months ago) by caltinay
do not run MT tests without direct solver.


Revision 5575 - Directory Listing
Modified Wed Apr 1 03:17:22 2015 UTC (2 years, 8 months ago) by sshaw
sphinx now builds python doco including module-level docstrings and class __init__ docstrings, also cleared up some doco errors and added multires documentation

Revision 5567 - Directory Listing
Modified Fri Mar 27 00:50:15 2015 UTC (2 years, 8 months ago) by sshaw
HTIWave and VTIWave models: disabling default absorption zone, adding option to disable fast assemblers, adding interface for setting PDE's q value for custom boundary conditions

Revision 5564 - Directory Listing
Modified Thu Mar 26 07:10:44 2015 UTC (2 years, 8 months ago) by jduplessis
changed eletrode dict to electrodelst


Revision 5563 - Directory Listing
Modified Thu Mar 26 07:03:32 2015 UTC (2 years, 8 months ago) by jfenwick
Fixed indenting and accounted for py3 RuntimeException not having .message


Revision 5562 - Directory Listing
Modified Thu Mar 26 01:36:21 2015 UTC (2 years, 8 months ago) by jfenwick
More split world functions

Revision 5559 - Directory Listing
Modified Wed Mar 25 05:32:01 2015 UTC (2 years, 8 months ago) by caltinay
changed axis of subdivision to avoid element stretching effects.


Revision 5558 - Directory Listing
Modified Wed Mar 25 02:13:05 2015 UTC (2 years, 8 months ago) by caltinay
Updated MT TM gradient which fixes test.
Also fixed some doc strings and replaced some asserts for better test
output.


Revision 5556 - Directory Listing
Modified Wed Mar 25 00:11:28 2015 UTC (2 years, 8 months ago) by gross
test added to fail TM forward

Revision 5555 - Directory Listing
Modified Tue Mar 24 06:31:43 2015 UTC (2 years, 8 months ago) by caltinay
Correction to TM mode gradient


Revision 5554 - Directory Listing
Modified Mon Mar 23 06:54:53 2015 UTC (2 years, 8 months ago) by gross
fixes and test for TM mode 

Revision 5553 - Directory Listing
Modified Mon Mar 23 05:42:53 2015 UTC (2 years, 8 months ago) by gross
fixes to MT-TE forward.

Revision 5550 - Directory Listing
Modified Fri Mar 20 01:03:01 2015 UTC (2 years, 8 months ago) by caltinay
some corrections to TM


Revision 5549 - Directory Listing
Modified Thu Mar 19 07:42:14 2015 UTC (2 years, 8 months ago) by caltinay
2D MT TM mode. Incomplete.


Revision 5548 - Directory Listing
Modified Thu Mar 19 06:30:13 2015 UTC (2 years, 8 months ago) by caltinay
Split forward models into separate files as it's getting very crowded now.


Revision 5546 - Directory Listing
Modified Thu Mar 19 01:18:23 2015 UTC (2 years, 8 months ago) by gross
fixes on MT forward and testing

Revision 5545 - Directory Listing
Modified Wed Mar 18 06:18:19 2015 UTC (2 years, 9 months ago) by caltinay
MT TE: merge data points and weights into a Data object each to save time.
Also some cleanup.


Revision 5543 - Directory Listing
Modified Wed Mar 18 03:23:05 2015 UTC (2 years, 9 months ago) by gross
grad fixed

Revision 5542 - Directory Listing
Modified Wed Mar 18 01:55:21 2015 UTC (2 years, 9 months ago) by gross
some fixws to ME

Revision 5541 - Directory Listing
Modified Wed Mar 18 00:05:15 2015 UTC (2 years, 9 months ago) by gross
some modifications to the boundary condition

Revision 5538 - Directory Listing
Modified Tue Mar 17 00:24:11 2015 UTC (2 years, 9 months ago) by caltinay
updated MT TE forward model. This might break a test depending on tolerances...


Revision 5534 - Directory Listing
Modified Thu Mar 12 06:01:50 2015 UTC (2 years, 9 months ago) by caltinay
A bit of no-op cleanup in forwardmodels before adding things.


Revision 5519 - Directory Listing
Modified Tue Mar 10 05:32:16 2015 UTC (2 years, 9 months ago) by jfenwick
Reverting commit to allow it to be fixed more generally



Revision 5518 - Directory Listing
Modified Tue Mar 10 04:47:02 2015 UTC (2 years, 9 months ago) by jfenwick
Hack to avoid non-deterministic map order

Revision 5517 - Directory Listing
Modified Mon Mar 9 00:55:49 2015 UTC (2 years, 9 months ago) by jfenwick
Using // for integer division, in accordance with the prophecy.


Revision 5499 - Directory Listing
Modified Thu Feb 26 07:07:43 2015 UTC (2 years, 9 months ago) by jduplessis
fixing print function

Revision 5497 - Directory Listing
Modified Thu Feb 26 01:16:45 2015 UTC (2 years, 9 months ago) by jduplessis
sigmoid tuning

Revision 5495 - Directory Listing
Modified Wed Feb 25 05:32:12 2015 UTC (2 years, 9 months ago) by jduplessis
changed to sigmoid mapping

Revision 5459 - Directory Listing
Modified Wed Feb 11 04:31:31 2015 UTC (2 years, 10 months ago) by jduplessis
run dcforward: schlumberger tests uses analytic solver
dcresistivityforwardmodeling:added numeric solver for schlumberger 
domaingeneratordcresistivity:non layered meshses can set field size




Revision 5448 - Directory Listing
Modified Fri Feb 6 05:31:37 2015 UTC (2 years, 10 months ago) by jfenwick
Updating all the dates

Revision 5441 - Directory Listing
Modified Tue Feb 3 06:38:11 2015 UTC (2 years, 10 months ago) by jduplessis
changed the refrence for domain generator every now based around 0
made delphiIn accesable


Revision 5439 - Directory Listing
Modified Thu Jan 29 05:28:34 2015 UTC (2 years, 10 months ago) by jduplessis
updates and fix for layered domain


Revision 5437 - Directory Listing
Modified Wed Jan 28 06:47:42 2015 UTC (2 years, 10 months ago) by jduplessis
updated dc res mapping


Revision 5430 - Directory Listing
Modified Fri Jan 23 01:11:09 2015 UTC (2 years, 10 months ago) by gross
fixes in teh DCREs mapping

Revision 5427 - Directory Listing
Modified Thu Jan 22 05:04:49 2015 UTC (2 years, 10 months ago) by jduplessis
can be a list of tuples or list of lists


Revision 5426 - Directory Listing
Modified Thu Jan 22 04:35:31 2015 UTC (2 years, 10 months ago) by jduplessis
source sample tags


Revision 5422 - Directory Listing
Modified Mon Jan 19 04:36:08 2015 UTC (2 years, 10 months ago) by jduplessis
error check for 3d support

Revision 5421 - Directory Listing
Modified Mon Jan 19 00:40:53 2015 UTC (2 years, 10 months ago) by jduplessis
added resuse so use can specify wether or not to use the current meshfile or to over write it
the surface tagging was providing some issues commented out for now


Revision 5420 - Directory Listing
Modified Thu Jan 15 04:03:40 2015 UTC (2 years, 11 months ago) by jfenwick
Do not ignore gmshGeo2Msh return value

Revision 5411 - Directory Listing
Modified Mon Dec 22 01:39:10 2014 UTC (2 years, 11 months ago) by jfenwick
Fixed py3 matplotlib detection. Converted a division for py3

Revision 5407 - Directory Listing
Modified Thu Dec 18 02:48:24 2014 UTC (2 years, 11 months ago) by jfenwick
release changes

Revision 5401 - Directory Listing
Modified Wed Dec 17 04:09:16 2014 UTC (3 years ago) by jduplessis
mpirank added

Revision 5400 - Directory Listing
Modified Wed Dec 17 02:59:38 2014 UTC (3 years ago) by jduplessis
added unlink

Revision 5397 - Directory Listing
Modified Wed Dec 17 01:35:43 2014 UTC (3 years ago) by caltinay
new, single interface to gmsh in escriptcore used by pycad and downunder.


Revision 5383 - Directory Listing
Modified Tue Dec 16 00:44:47 2014 UTC (3 years ago) by sshaw
replacing dcresistivity gmsh runner with pycads

Revision 5376 - Directory Listing
Modified Mon Dec 15 23:20:01 2014 UTC (3 years ago) by jfenwick
Broadening tolerance for utopic version

Revision 5368 - Directory Listing
Modified Mon Dec 15 04:04:51 2014 UTC (3 years ago) by caltinay
Added commented changes so they don't get lost.


Revision 5367 - Directory Listing
Modified Mon Dec 15 04:02:21 2014 UTC (3 years ago) by caltinay
Undoing parts of r5363 until tests reflect the change.


Revision 5366 - Directory Listing
Modified Mon Dec 15 03:51:02 2014 UTC (3 years ago) by jduplessis
fixed naming conventions + comments

Revision 5363 - Directory Listing
Modified Mon Dec 15 01:45:09 2014 UTC (3 years ago) by caltinay
Added 'pressure at 0' option to Isostatic Pressure calculation.


Revision 5362 - Directory Listing
Modified Mon Dec 15 01:36:27 2014 UTC (3 years ago) by sshaw
making DipoleDipole test more tolerant to cope with gmsh's filthy non-deterministic seeding by output filename


Revision 5360 - Directory Listing
Modified Sun Dec 14 23:57:33 2014 UTC (3 years ago) by sshaw
fixing sillyness from my previous commit

Revision 5359 - Directory Listing
Modified Sun Dec 14 23:17:37 2014 UTC (3 years ago) by sshaw
making dcforward tests more verbose when failing

Revision 5358 - Directory Listing
Modified Fri Dec 12 06:25:52 2014 UTC (3 years ago) by jduplessis
removed debug

Revision 5357 - Directory Listing
Modified Fri Dec 12 06:09:59 2014 UTC (3 years ago) by jduplessis
faster test

Revision 5329 - Directory Listing
Modified Tue Dec 9 23:44:48 2014 UTC (3 years ago) by jfenwick
Not sure how I missed this one

Revision 5324 - Directory Listing
Modified Tue Dec 9 04:43:02 2014 UTC (3 years ago) by sshaw
fixing python 3 dealing badly with str(generators)

Revision 5320 - Directory Listing
Modified Tue Dec 9 01:39:46 2014 UTC (3 years ago) by sshaw
new EscriptParam GMSH_SUPPORT and GMSH_MPI for use in python-land, included associated exceptions in DCRes gmsh use and assocaiated skips in relevant tests

Revision 5319 - Directory Listing
Modified Tue Dec 9 00:58:32 2014 UTC (3 years ago) by jduplessis
small changes to indentation etc


Revision 5316 - Directory Listing
Modified Mon Dec 8 06:30:49 2014 UTC (3 years ago) by sshaw
better cleanup of dcres tempfiles

Revision 5315 - Directory Listing
Modified Mon Dec 8 05:08:54 2014 UTC (3 years ago) by sshaw
resistivity style fixes for consistency, adding skips for non-finley builds

Revision 5309 - Directory Listing
Modified Mon Dec 8 00:08:32 2014 UTC (3 years ago) by sshaw
catching other case of domainGenerator tests failing

Revision 5308 - Directory Listing
Modified Fri Dec 5 04:58:53 2014 UTC (3 years ago) by sshaw
more silly importerror fixes in tests

Revision 5307 - Directory Listing
Modified Fri Dec 5 04:30:05 2014 UTC (3 years ago) by sshaw
fixing inverted boolean for ripley presence

Revision 5306 - Directory Listing
Modified Fri Dec 5 01:49:46 2014 UTC (3 years ago) by jduplessis
added skip if gmsh missing

Revision 5300 - Directory Listing
Modified Thu Dec 4 05:44:25 2014 UTC (3 years ago) by jduplessis
added missing init

Revision 5299 - Directory Listing
Modified Thu Dec 4 04:07:23 2014 UTC (3 years ago) by jduplessis
all classes tested, documentation and small fixes to follow

Revision 5294 - Directory Listing
Modified Wed Dec 3 05:30:18 2014 UTC (3 years ago) by sshaw
working around oddness when catching ImportErrors after catching a propagated ImportError, cleaning up last of finley examples without domain checks

Revision 5290 - Directory Listing
Modified Wed Dec 3 01:15:33 2014 UTC (3 years ago) by sshaw
fixing some broken imports from earlier commit

Revision 5288 - Directory Listing
Modified Tue Dec 2 23:18:40 2014 UTC (3 years ago) by sshaw
fixing tests for cases where required domains not built

Revision 5286 - Directory Listing
Modified Tue Dec 2 03:45:09 2014 UTC (3 years ago) by caltinay
removed obsolete (?) tests...


Revision 5278 - Directory Listing
Modified Thu Nov 27 00:25:49 2014 UTC (3 years ago) by sshaw
sphinxifying older style python doco, including order shifting of module doc

Revision 5276 - Directory Listing
Modified Fri Nov 21 04:27:37 2014 UTC (3 years ago) by jduplessis
fixed pole-pole gradient


Revision 5274 - Directory Listing
Modified Wed Nov 19 03:44:48 2014 UTC (3 years ago) by sshaw
python3ifying division in downunder, stripping some debug prints

Revision 5264 - Directory Listing
Modified Mon Nov 17 03:04:10 2014 UTC (3 years ago) by sshaw
python3ifying xrange calls

Revision 5263 - Directory Listing
Modified Sun Nov 16 23:35:59 2014 UTC (3 years, 1 month ago) by sshaw
python3ifying prints

Revision 5262 - Directory Listing
Modified Thu Nov 13 08:11:40 2014 UTC (3 years, 1 month ago) by gross
Some fixes to the dcresitivity forward model. simple test added. 

Revision 5260 - Directory Listing
Modified Wed Nov 12 05:19:36 2014 UTC (3 years, 1 month ago) by jduplessis
changed to primary potential as an input


Revision 5253 - Directory Listing
Modified Mon Nov 10 07:07:34 2014 UTC (3 years, 1 month ago) by gross
some work on the DcRes

Revision 5251 - Directory Listing
Modified Mon Nov 10 04:34:39 2014 UTC (3 years, 1 month ago) by gross
Ricker support velocity outout

Revision 5249 - Directory Listing
Modified Mon Nov 10 00:47:47 2014 UTC (3 years, 1 month ago) by jduplessis
further name changes


Revision 5248 - Directory Listing
Modified Mon Nov 10 00:37:31 2014 UTC (3 years, 1 month ago) by jduplessis
debug and name changes


Revision 5242 - Directory Listing
Modified Wed Nov 5 01:34:55 2014 UTC (3 years, 1 month ago) by jduplessis
python 3 print 


Revision 5241 - Directory Listing
Modified Tue Nov 4 06:47:42 2014 UTC (3 years, 1 month ago) by jduplessis
non exponential mapping


Revision 5235 - Directory Listing
Modified Wed Oct 29 01:01:44 2014 UTC (3 years, 1 month ago) by caltinay
Tweaks to the forward model tests and finally silenced all but rank 0
for unit test output. I don't think this will hide useful info as all
ranks should output the same thing by the TextTestRunner...


Revision 5234 - Directory Listing
Modified Wed Oct 29 00:54:43 2014 UTC (3 years, 1 month ago) by jduplessis
commented out prints


Revision 5233 - Directory Listing
Modified Wed Oct 29 00:49:32 2014 UTC (3 years, 1 month ago) by jduplessis
added changes for polepole models


Revision 5232 - Directory Listing
Modified Wed Oct 29 00:19:06 2014 UTC (3 years, 1 month ago) by caltinay
array of mu's should be float even if someone does [1,2].



Revision 5230 - Directory Listing
Modified Tue Oct 28 07:38:38 2014 UTC (3 years, 1 month ago) by caltinay
lowered tolerance so cusp BiCGSTAB solves to required accuracy by this test.


Revision 5218 - Directory Listing
Modified Thu Oct 23 00:37:38 2014 UTC (3 years, 1 month ago) by jduplessis
debug removings

Revision 5216 - Directory Listing
Modified Thu Oct 23 00:12:22 2014 UTC (3 years, 1 month ago) by jduplessis
further removal of print statements

Revision 5215 - Directory Listing
Modified Thu Oct 23 00:10:19 2014 UTC (3 years, 1 month ago) by jduplessis
fixed mpi version for when mesh does not exists and removed some print statements

Revision 5210 - Directory Listing
Modified Wed Oct 22 03:50:06 2014 UTC (3 years, 1 month ago) by jduplessis
added copyright message

Revision 5204 - Directory Listing
Modified Tue Oct 14 22:33:56 2014 UTC (3 years, 2 months ago) by jduplessis
removed debug print


Revision 5203 - Directory Listing
Modified Tue Oct 14 06:46:34 2014 UTC (3 years, 2 months ago) by jduplessis
removed debug print statement


Revision 5202 - Directory Listing
Modified Mon Oct 13 00:53:00 2014 UTC (3 years, 2 months ago) by caltinay
comment debug output (py3 errors)


Revision 5200 - Directory Listing
Modified Thu Oct 9 05:18:45 2014 UTC (3 years, 2 months ago) by sshaw
removing prints from tests

Revision 5199 - Directory Listing
Modified Thu Oct 9 05:17:02 2014 UTC (3 years, 2 months ago) by sshaw
adjusting tests to allow for domain resizing under MPI


Revision 5197 - Directory Listing
Modified Wed Oct 8 04:41:15 2014 UTC (3 years, 2 months ago) by sshaw
allows absorption zones of zero size in seismic models

Revision 5181 - Directory Listing
Modified Tue Sep 30 01:42:49 2014 UTC (3 years, 2 months ago) by gross
for buildbot testing

Revision 5176 - Directory Listing
Modified Thu Sep 25 04:36:28 2014 UTC (3 years, 2 months ago) by sshaw
fixes to wave models using wavelet acceleration instead of value


Revision 5169 - Directory Listing
Modified Mon Sep 22 08:46:58 2014 UTC (3 years, 2 months ago) by gross
tIsostaticPressure testing added

Revision 5163 - Directory Listing
Modified Wed Sep 17 08:56:09 2014 UTC (3 years, 2 months ago) by gross
subsidence forward model and testing added

Revision 5152 - Directory Listing
Modified Tue Sep 16 01:29:30 2014 UTC (3 years, 3 months ago) by jduplessis
add dcresistivity inversion


Revision 5148 - Directory Listing
Modified Mon Sep 15 01:25:23 2014 UTC (3 years, 3 months ago) by caltinay
Merging ripley diagonal storage + CUDA support into trunk.
Options file version has been incremented due to new options
'cuda' and 'nvccflags'.


Revision 5112 - Directory Listing
Modified Mon Aug 11 04:17:17 2014 UTC (3 years, 4 months ago) by caltinay
Report regularization terms separately when debug output is enabled.


Revision 5089 - Directory Listing
Modified Tue Jul 1 01:07:16 2014 UTC (3 years, 5 months ago) by jduplessis
fix missing self.__


Revision 5088 - Directory Listing
Modified Tue Jul 1 00:32:22 2014 UTC (3 years, 5 months ago) by jduplessis
option for direct solver with mtInversion

Revision 5077 - Directory Listing
Modified Tue Jun 24 03:51:19 2014 UTC (3 years, 5 months ago) by caltinay
Make readBinaryGrid "public" within the ripley module.


Revision 5073 - Directory Listing
Modified Mon Jun 23 22:22:44 2014 UTC (3 years, 5 months ago) by caltinay
fixing some py3 warnings.


Revision 5071 - Directory Listing
Modified Mon Jun 23 04:36:14 2014 UTC (3 years, 5 months ago) by sshaw
fixing python 3 xrange unfriendliness

Revision 5067 - Directory Listing
Modified Fri Jun 20 06:04:58 2014 UTC (3 years, 5 months ago) by sshaw
actually fixing python 3 breakage and not the previous commits rewrite of lots of code repetition

Revision 5057 - Directory Listing
Modified Fri Jun 20 01:53:38 2014 UTC (3 years, 5 months ago) by gross
some fixes for MT-TE

Revision 5049 - Directory Listing
Modified Wed Jun 18 04:17:26 2014 UTC (3 years, 5 months ago) by sshaw
small code documentation cleanup

Revision 5048 - Directory Listing
Modified Fri Jun 13 05:41:15 2014 UTC (3 years, 6 months ago) by caltinay
fixed typo in lbfgs-SetOptions.


Revision 5040 - Directory Listing
Modified Thu Jun 12 05:12:33 2014 UTC (3 years, 6 months ago) by caltinay
gravity constant scaling for geodetic coordinates does not appear to be
right so reverting for now.


Revision 5031 - Directory Listing
Modified Thu Jun 12 01:01:21 2014 UTC (3 years, 6 months ago) by sshaw
retrieving LinearMappingX from the lost and found bin

Revision 5025 - Directory Listing
Modified Wed Jun 11 05:44:31 2014 UTC (3 years, 6 months ago) by caltinay
Fix to gravity model with geodetic coords and another instance of
== badness.


Revision 5024 - Directory Listing
Modified Tue Jun 10 08:46:07 2014 UTC (3 years, 6 months ago) by jfenwick
Fixing more == None


Revision 5017 - Directory Listing
Modified Tue Jun 10 02:16:18 2014 UTC (3 years, 6 months ago) by sshaw
scons now runs tests via a testrunner to collect lists of skipped tests in build/ (examples have their own builder since they aren't unit tests)
fixed hessian regularisation tests falling over by adding a shortcircuit optional arg that returns the pde, not the solution
added missing/omitted tests back into scons tests


Revision 5013 - Directory Listing
Modified Fri Jun 6 07:25:13 2014 UTC (3 years, 6 months ago) by caltinay
fix minor typo


Revision 5011 - Directory Listing
Modified Fri Jun 6 07:05:50 2014 UTC (3 years, 6 months ago) by jduplessis
updates getInverse for mt


Revision 5010 - Directory Listing
Modified Fri Jun 6 07:00:28 2014 UTC (3 years, 6 months ago) by caltinay
fixes #270 (pathological case).


Revision 5006 - Directory Listing
Modified Fri Jun 6 03:40:44 2014 UTC (3 years, 6 months ago) by gross
Cross-Gradient testing added. No dramas.

Revision 5005 - Directory Listing
Modified Fri Jun 6 03:11:14 2014 UTC (3 years, 6 months ago) by gross
test for Hessian added. Cross  gradient is still missing.

Revision 5004 - Directory Listing
Modified Fri Jun 6 02:34:27 2014 UTC (3 years, 6 months ago) by gross
two bug fixes in the cross gradient term

Revision 5002 - Directory Listing
Modified Fri Jun 6 00:21:58 2014 UTC (3 years, 6 months ago) by sshaw
tweaking test class name to allow unittest to function

Revision 5001 - Directory Listing
Modified Thu Jun 5 23:59:21 2014 UTC (3 years, 6 months ago) by gross
regularization test added.

Revision 4995 - Directory Listing
Modified Thu Jun 5 03:44:16 2014 UTC (3 years, 6 months ago) by caltinay
Doc fixes and ensuring that expensive debug ops will not be processed if debug
mode is disabled.


Revision 4992 - Directory Listing
Modified Thu Jun 5 01:38:33 2014 UTC (3 years, 6 months ago) by caltinay
Don't obtain/report UTM zone for non-cartesian coordinate systems.


Revision 4991 - Directory Listing
Modified Thu Jun 5 01:01:41 2014 UTC (3 years, 6 months ago) by jduplessis
adding MT data


Revision 4990 - Directory Listing
Modified Wed Jun 4 13:17:15 2014 UTC (3 years, 6 months ago) by jduplessis
added mtMappings


Revision 4984 - Directory Listing
Modified Mon Jun 2 02:50:34 2014 UTC (3 years, 6 months ago) by sshaw
revamping testrunners, now uses automated discovery and allows running specific tests without modifying files (see escriptcore/py_src/testing.py for more info/examples)


Revision 4981 - Directory Listing
Modified Mon Jun 2 00:26:35 2014 UTC (3 years, 6 months ago) by gross
MT tests added

Revision 4980 - Directory Listing
Modified Sun Jun 1 23:53:11 2014 UTC (3 years, 6 months ago) by gross
more fixes on MT

Revision 4979 - Directory Listing
Modified Sun Jun 1 22:36:16 2014 UTC (3 years, 6 months ago) by gross
some fixes to the MT forward model

Revision 4977 - Directory Listing
Modified Thu May 29 08:51:43 2014 UTC (3 years, 6 months ago) by caltinay
la la la....


Revision 4976 - Directory Listing
Modified Thu May 29 08:27:53 2014 UTC (3 years, 6 months ago) by gross
gradient for coordinate systems added

Revision 4975 - Directory Listing
Modified Thu May 29 03:44:49 2014 UTC (3 years, 6 months ago) by caltinay
Don't cast p0 to a float as it might be a data object.


Revision 4974 - Directory Listing
Modified Wed May 28 08:02:02 2014 UTC (3 years, 6 months ago) by jduplessis
added a data source object for MT2DTE


Revision 4971 - Directory Listing
Modified Tue May 27 04:52:52 2014 UTC (3 years, 6 months ago) by caltinay
debug output clean up.


Revision 4967 - Directory Listing
Modified Mon May 26 04:18:19 2014 UTC (3 years, 6 months ago) by sshaw
5.1e-8 is close enough to zero, rounding is breaking this on clang/mac so making it strict <

Revision 4964 - Directory Listing
Modified Fri May 23 07:14:25 2014 UTC (3 years, 6 months ago) by gross
MT2D forward pproblem

Revision 4959 - Directory Listing
Modified Wed May 21 04:22:14 2014 UTC (3 years, 6 months ago) by gross
added some text on 2D MT TE inversion

Revision 4939 - Directory Listing
Modified Wed May 14 03:56:47 2014 UTC (3 years, 7 months ago) by caltinay
close the file after finishing reading to avoid segfault on centos.


Revision 4938 - Directory Listing
Modified Wed May 14 01:13:23 2014 UTC (3 years, 7 months ago) by jfenwick
Modify unit tests to read their classes from
esys.escriptcore.utestselect

Change the line in that file to switch between unittest and unittest2



Revision 4931 - Directory Listing
Modified Mon May 12 02:27:34 2014 UTC (3 years, 7 months ago) by jduplessis
this is a fix for older versions of numpy where passing in an a list of ints causes
 the inver code to break.


Revision 4910 - Directory Listing
Modified Wed Apr 30 02:21:59 2014 UTC (3 years, 7 months ago) by jduplessis
fix docstring error


Revision 4907 - Directory Listing
Modified Tue Apr 29 12:58:43 2014 UTC (3 years, 7 months ago) by jduplessis
fix docstring indentation isssue for accousticwaveform


Revision 4906 - Directory Listing
Modified Tue Apr 29 05:27:34 2014 UTC (3 years, 7 months ago) by sshaw
restoring lost changes

Revision 4895 - Directory Listing
Modified Tue Apr 29 00:21:43 2014 UTC (3 years, 7 months ago) by sshaw
affected tests now skipped if pyproj not installed

Revision 4858 - Directory Listing
Modified Wed Apr 9 23:34:17 2014 UTC (3 years, 8 months ago) by sshaw
skipping multirank segywriter tests now that multirank writes throw exceptions

Revision 4854 - Directory Listing
Modified Wed Apr 9 06:17:09 2014 UTC (3 years, 8 months ago) by gross
FWI is running

Revision 4850 - Directory Listing
Modified Wed Apr 9 02:26:22 2014 UTC (3 years, 8 months ago) by sshaw
adding exception for multi-rank segy write instead of failing to write correctly and reporting success

Revision 4847 - Directory Listing
Modified Wed Apr 9 00:11:55 2014 UTC (3 years, 8 months ago) by sshaw
fixed awkard integer division in LinearMapping (py3 unaffected)

Revision 4821 - Directory Listing
Modified Tue Apr 1 04:58:33 2014 UTC (3 years, 8 months ago) by sshaw
moved SolverOptions to c++, split into SolverOptions for the options and SolverBuddy as the state as a precursor to per-pde solving... does break some use cases (e.g. pde.getSolverOptions().DIRECT will now fail, new value access is with SolverOptions.DIRECT), examples and documentation updated to match

Revision 4782 - Directory Listing
Modified Thu Mar 20 05:16:16 2014 UTC (3 years, 8 months ago) by sshaw
cleaned up and simplified run_seismic tests, including specific checking for obspy not being installed

Revision 4778 - Directory Listing
Modified Thu Mar 20 00:41:58 2014 UTC (3 years, 8 months ago) by sshaw
python3ified tests using deprecated test methods ( #89 and #106 ), added run_seismic into downunder tests (with skips if obspy/segywriters fail to write)

Revision 4777 - Directory Listing
Modified Wed Mar 19 23:52:36 2014 UTC (3 years, 8 months ago) by sshaw
replacing xrange with range for python3 compatibility, refs #106

Revision 4764 - Directory Listing
Modified Tue Mar 18 15:58:21 2014 UTC (3 years, 9 months ago) by gross
mapping test fixed

Revision 4759 - Directory Listing
Modified Mon Mar 17 07:52:26 2014 UTC (3 years, 9 months ago) by jfenwick
Throw TypeError on any attempt to use relational ops on Data, FunctionSpace and Domain.  Also fixes a type error in run_mappings.py but the test still fails.

Revision 4758 - Directory Listing
Modified Mon Mar 17 05:00:27 2014 UTC (3 years, 9 months ago) by sshaw
fixed classname typo for AcousticVelocityMapping, added exceptions for ordered comparisons with Data objects from python (#107)

Revision 4749 - Directory Listing
Modified Fri Mar 14 03:05:07 2014 UTC (3 years, 9 months ago) by sshaw
making inversioncostfunctions python3 compatible

Revision 4748 - Directory Listing
Modified Fri Mar 14 00:30:51 2014 UTC (3 years, 9 months ago) by sshaw
adjusted InversionCostFunction tests to run on arbitrary numbers of ranks

Revision 4744 - Directory Listing
Modified Wed Mar 12 21:30:10 2014 UTC (3 years, 9 months ago) by gross
first version of a FWI

Revision 4743 - Directory Listing
Modified Wed Mar 12 21:09:20 2014 UTC (3 years, 9 months ago) by gross
mapping for FWI added

Revision 4739 - Directory Listing
Modified Wed Mar 12 03:25:32 2014 UTC (3 years, 9 months ago) by sshaw
fixing test file filename mismatch

Revision 4737 - Directory Listing
Modified Tue Mar 11 13:23:21 2014 UTC (3 years, 9 months ago) by gross
missing file

Revision 4729 - Directory Listing
Modified Sat Mar 8 00:56:37 2014 UTC (3 years, 9 months ago) by gross
a more general for of the inversioncostfunction has required for waveform inversin

Revision 4719 - Directory Listing
Modified Fri Feb 28 00:27:29 2014 UTC (3 years, 9 months ago) by jfenwick
Modify run_forward test to account for small negative results.

Revision 4713 - Directory Listing
Modified Thu Feb 27 02:00:15 2014 UTC (3 years, 9 months ago) by jfenwick
Added a temporay fix to get some of the unit tests passing again.
This mechanism will be removed before the release so don't get used to it.

Revision 4700 - Directory Listing
Modified Thu Feb 20 03:57:17 2014 UTC (3 years, 9 months ago) by gross
some more work toward seismic data

Revision 4698 - Directory Listing
Modified Wed Feb 19 08:10:12 2014 UTC (3 years, 9 months ago) by gross
data sources support tags now

Revision 4697 - Directory Listing
Modified Wed Feb 19 08:03:56 2014 UTC (3 years, 9 months ago) by gross
data sources support tags now

Revision 4691 - Directory Listing
Modified Wed Feb 19 05:23:17 2014 UTC (3 years, 9 months ago) by sshaw
added support for HTI waves to the fast wave assembler

Revision 4688 - Directory Listing
Modified Wed Feb 19 03:18:58 2014 UTC (3 years, 9 months ago) by gross
acoustic forward problem + testing add

Revision 4658 - Directory Listing
Modified Thu Feb 6 13:28:56 2014 UTC (3 years, 10 months ago) by caltinay
This seems to fix #65 but is a bit scary.
netcdf and gdal (and others?) seem to return bytearrays instead of strings in
py3, which when fed back into a library function caused a segfault.
Not sure if I caught every case and whether this is actually a bug in the lib...


Revision 4657 - Directory Listing
Modified Thu Feb 6 06:12:20 2014 UTC (3 years, 10 months ago) by jfenwick
I changed some files.
Updated copyright notices, added GeoComp.




Revision 4646 - Directory Listing
Modified Mon Feb 3 00:25:58 2014 UTC (3 years, 10 months ago) by gross
some extensions to synthetic_sonicHTI.py

Revision 4643 - Directory Listing
Modified Sun Feb 2 23:52:38 2014 UTC (3 years, 10 months ago) by sshaw
fixed some error message formatting interpreting tuples badly

Revision 4637 - Directory Listing
Modified Thu Jan 30 00:01:47 2014 UTC (3 years, 10 months ago) by gross
TTI fixes

Revision 4636 - Directory Listing
Modified Tue Jan 28 04:24:30 2014 UTC (3 years, 10 months ago) by sshaw
fixed more whitespace issues


Revision 4635 - Directory Listing
Modified Tue Jan 28 03:34:04 2014 UTC (3 years, 10 months ago) by sshaw
fixed mixed tabs/spaces for python 3 compatibility

Revision 4631 - Directory Listing
Modified Fri Jan 24 04:13:56 2014 UTC (3 years, 10 months ago) by gross
2d TTI added

Revision 4630 - Directory Listing
Modified Fri Jan 24 03:32:11 2014 UTC (3 years, 10 months ago) by sshaw
fixed a leftover from testin gin seismic, changed synthetic_VTI example back to original large 2D problem

Revision 4629 - Directory Listing
Modified Fri Jan 24 03:29:25 2014 UTC (3 years, 10 months ago) by sshaw
added dirac point interpolation to ripley (and fixed dirac points in Brick)
added fast wave assembler for Brick and minor correction to fast wave assembler for Rectangle


Revision 4625 - Directory Listing
Modified Mon Jan 20 03:42:55 2014 UTC (3 years, 10 months ago) by sshaw
amalgamated waveassembler constant construction into the one place

Revision 4624 - Directory Listing
Modified Sun Jan 19 23:03:59 2014 UTC (3 years, 10 months ago) by sshaw
removed some leftover debug prints

Revision 4623 - Directory Listing
Modified Fri Jan 17 05:53:17 2014 UTC (3 years, 10 months ago) by sshaw
added missing files and a spare missing comma, also the ability for finley VTIWaves to not crash

Revision 4622 - Directory Listing
Modified Fri Jan 17 04:55:41 2014 UTC (3 years, 10 months ago) by sshaw
Added dirac support to ripley, added interface for custom assemblers for ripleydomains (also added the custom assembler for 2D VTI waves), changed synthetic_VTI example to use the new, faster custom assembler


Revision 4620 - Directory Listing
Modified Thu Jan 16 03:17:20 2014 UTC (3 years, 11 months ago) by caltinay
py3 RuntimeError does not have 'message' member.


Revision 4618 - Directory Listing
Modified Wed Jan 15 04:35:19 2014 UTC (3 years, 11 months ago) by caltinay
Implemented reverse reading of grid data from netcdf files.
Fixes #44.


Revision 4616 - Directory Listing
Modified Tue Jan 14 22:57:47 2014 UTC (3 years, 11 months ago) by caltinay
- Fixed unit test failure by populating missing parts of the struct
- prepared for reversing read order from grids
- worked around a segfault caused by python version in jessie (2.7.6) in
  combination with gdal,pyproj and RTLD_GLOBAL in dlopen flags.



Revision 4614 - Directory Listing
Modified Mon Jan 13 02:44:07 2014 UTC (3 years, 11 months ago) by caltinay
Corrected a faulty test.


Revision 4613 - Directory Listing
Modified Mon Jan 13 01:09:01 2014 UTC (3 years, 11 months ago) by caltinay
Addresses #43 - altitude is now scaled according to reference system height
unit.
Also separated out UTM zone determination from the actual projection code
to silence bogus output.


Revision 4612 - Directory Listing
Modified Thu Jan 9 05:30:27 2014 UTC (3 years, 11 months ago) by gross
modifications to sonic seismic

Revision 4611 - Directory Listing
Modified Mon Dec 23 04:03:00 2013 UTC (3 years, 11 months ago) by gross
scaling corrected

Revision 4610 - Directory Listing
Modified Mon Dec 23 00:01:23 2013 UTC (3 years, 11 months ago) by gross
exposed createAbsorbtionLayerFunction

Revision 4604 - Directory Listing
Modified Wed Dec 18 03:29:26 2013 UTC (3 years, 11 months ago) by sshaw
fixed tabs/space mix for python3

Revision 4601 - Directory Listing
Modified Tue Dec 17 23:37:08 2013 UTC (3 years, 11 months ago) by gross
downunder: self-demagnetization added as forward model. 



Revision 4599 - Directory Listing
Modified Sun Dec 15 23:51:13 2013 UTC (4 years ago) by sshaw
merged 3.4.1 release changes into trunk

Revision 4576 - Directory Listing
Modified Mon Dec 9 23:35:30 2013 UTC (4 years ago) by sshaw
python3ified things, replaced mixed whitespace and xrange calls

Revision 4573 - Directory Listing
Modified Mon Dec 9 03:42:50 2013 UTC (4 years ago) by gross
HTI added

Revision 4570 - Directory Listing
Modified Fri Dec 6 02:22:37 2013 UTC (4 years ago) by gross
strain convention corrected.

Revision 4565 - Directory Listing
Modified Wed Dec 4 06:42:30 2013 UTC (4 years ago) by gross
and another typo fixed.

Revision 4564 - Directory Listing
Modified Wed Dec 4 06:34:14 2013 UTC (4 years ago) by gross
VTI wave added  

Revision 4563 - Directory Listing
Modified Wed Dec 4 06:30:59 2013 UTC (4 years ago) by gross
typo fixed

Revision 4562 - Directory Listing
Modified Wed Dec 4 05:41:10 2013 UTC (4 years ago) by gross
VTI wave added  

Revision 4561 - Directory Listing
Modified Wed Dec 4 05:19:32 2013 UTC (4 years ago) by caltinay
Removed spurious print and some minor changes in inversion example.


Revision 4556 - Directory Listing
Modified Tue Dec 3 05:40:53 2013 UTC (4 years ago) by sshaw
fixed mixed tabs/spaces and py2 prints breaking the python3 compiler

Revision 4549 - Directory Listing
Modified Fri Nov 29 05:24:40 2013 UTC (4 years ago) by gross
argument for lumping added.

Revision 4546 - Directory Listing
Modified Thu Nov 28 05:30:48 2013 UTC (4 years ago) by gross
sonic wave propagation added

Revision 4545 - Directory Listing
Modified Thu Nov 28 05:02:43 2013 UTC (4 years ago) by gross
wave simulator base added

Revision 4544 - Directory Listing
Modified Thu Nov 28 04:01:46 2013 UTC (4 years ago) by gross
wave simulator base added

Revision 4541 - Directory Listing
Modified Thu Nov 28 01:17:19 2013 UTC (4 years ago) by gross
Ricker wavelet added

Revision 4540 - Directory Listing
Modified Thu Nov 28 01:06:10 2013 UTC (4 years ago) by gross
segy writer added

Revision 4539 - Directory Listing
Modified Thu Nov 28 00:38:10 2013 UTC (4 years ago) by gross
segy writer test added.

Revision 4538 - Directory Listing
Modified Thu Nov 28 00:37:48 2013 UTC (4 years ago) by gross
segy writer added

Revision 4535 - Directory Listing
Modified Wed Nov 20 06:37:53 2013 UTC (4 years ago) by gross
strong correlation joint inversion fixed.

Revision 4534 - Directory Listing
Modified Thu Nov 7 08:17:02 2013 UTC (4 years, 1 month ago) by gross
typo fixed

Revision 4533 - Directory Listing
Modified Thu Nov 7 04:56:11 2013 UTC (4 years, 1 month ago) by gross
typo fixed

Revision 4532 - Directory Listing
Modified Thu Nov 7 04:54:56 2013 UTC (4 years, 1 month ago) by gross
strongly coupled joint inversion added

Revision 4522 - Directory Listing
Modified Mon Aug 26 22:15:26 2013 UTC (4 years, 3 months ago) by caltinay
Newer versions of proj require specifying ellipsoid parameter.


Revision 4518 - Directory Listing
Modified Tue Aug 13 01:49:59 2013 UTC (4 years, 4 months ago) by caltinay
The line search step length caching should only be used within esys.downunder
inversions where the inverse Hessian approximation is not very good at the
moment.


Revision 4517 - Directory Listing
Modified Mon Aug 12 05:56:54 2013 UTC (4 years, 4 months ago) by caltinay
Implemented caching (and relaxation) of line search step size alpha.
Experiments show a significant decrease in the number of  iterations required
to converge with this change.


Revision 4516 - Directory Listing
Modified Thu Aug 8 05:41:49 2013 UTC (4 years, 4 months ago) by caltinay
Implemented more CF conventions for the netCDF datasource.
Also added a check to LatLonToUTM to pass through coordinates that are already
projected.
Data gridded by GDAL is now understood.


Revision 4503 - Directory Listing
Modified Wed Jul 17 05:27:36 2013 UTC (4 years, 5 months ago) by caltinay
Skip new test with >1 rank.


Revision 4502 - Directory Listing
Modified Wed Jul 17 03:12:28 2013 UTC (4 years, 5 months ago) by caltinay
Test reading IEEE8ByteReal data from ER Mapper files.


Revision 4495 - Directory Listing
Modified Fri Jul 5 02:19:47 2013 UTC (4 years, 5 months ago) by caltinay
Added support for more input data types in ER Mapper files.
Tests will follow soon.


Revision 4477 - Directory Listing
Modified Thu Jun 20 02:41:28 2013 UTC (4 years, 5 months ago) by caltinay
escript: use scoped_array instead of scoped_ptr
ripley: netcdf returns a copy of an array so use scoped_array
downunder: s/Sperical/Spherical/
scripts: added a few more suppressions


Revision 4462 - Directory Listing
Modified Mon Jun 17 04:12:06 2013 UTC (4 years, 6 months ago) by caltinay
Raise exception if background magnetic field has not been set but is required.


Revision 4450 - Directory Listing
Modified Thu Jun 13 00:45:59 2013 UTC (4 years, 6 months ago) by jfenwick
install docs - still waiting on Mac. Removing debug output.

Revision 4445 - Directory Listing
Modified Tue Jun 11 03:35:55 2013 UTC (4 years, 6 months ago) by caltinay
Apply weight rescaling to input weights before the coordinate scaling.
Also skipping a check when more than 1 rank is used.


Revision 4443 - Directory Listing
Modified Mon Jun 10 04:50:27 2013 UTC (4 years, 6 months ago) by caltinay
Update test to take into account changed height scale.


Revision 4436 - Directory Listing
Modified Mon Jun 3 05:37:31 2013 UTC (4 years, 6 months ago) by caltinay
Tweak.


Revision 4435 - Directory Listing
Modified Mon Jun 3 04:27:57 2013 UTC (4 years, 6 months ago) by caltinay
Fixed a few scaling problems for non-cartesian coordinates in domainbuilder.


Revision 4434 - Directory Listing
Modified Mon Jun 3 00:43:29 2013 UTC (4 years, 6 months ago) by caltinay
tab-fixes and an indexing fix.


Revision 4433 - Directory Listing
Modified Fri May 31 12:09:58 2013 UTC (4 years, 6 months ago) by gross
some clarifications on geodetic coordinates. 
order of background magnetic flux density component has been corrected: input is now B_east, B_north, B_vertical.



Revision 4417 - Directory Listing
Modified Mon May 20 02:15:47 2013 UTC (4 years, 6 months ago) by caltinay
Retab regularizations.


Revision 4416 - Directory Listing
Modified Fri May 17 02:32:33 2013 UTC (4 years, 7 months ago) by jfenwick
Renaming a thing and adding some doco.

Revision 4405 - Directory Listing
Modified Sun May 12 23:27:33 2013 UTC (4 years, 7 months ago) by caltinay
Once again..


Revision 4404 - Directory Listing
Modified Sun May 12 23:25:10 2013 UTC (4 years, 7 months ago) by caltinay
Retab forwardmodels


Revision 4400 - Directory Listing
Modified Fri May 10 04:05:00 2013 UTC (4 years, 7 months ago) by caltinay
Uaaargh - the minimizer ate my files! Fixed reporting of iteration number in
callback.


Revision 4398 - Directory Listing
Modified Thu May 9 08:42:44 2013 UTC (4 years, 7 months ago) by jfenwick
support for supressing doco subpackages. fiddling with one of the imports to try to reduce the number of places where Data appears.  Seriously it looks like we have 8 different Data classes

Revision 4397 - Directory Listing
Modified Thu May 9 06:17:15 2013 UTC (4 years, 7 months ago) by jfenwick
Added some doco to make it a little easier to work out what is going on.
Cleaned up some reST ugliness


Revision 4395 - Directory Listing
Modified Wed May 8 03:05:05 2013 UTC (4 years, 7 months ago) by caltinay
Changed trade-off factors for example to avoid unit test failures due to
scaling issues.


Revision 4394 - Directory Listing
Modified Tue May 7 04:56:59 2013 UTC (4 years, 7 months ago) by caltinay
Fixed rounding with lat/lon coordinates and removed stray print statements.


Revision 4393 - Directory Listing
Modified Mon May 6 03:35:48 2013 UTC (4 years, 7 months ago) by caltinay
Correct indexing of forward models.


Revision 4390 - Directory Listing
Modified Mon May 6 01:59:34 2013 UTC (4 years, 7 months ago) by caltinay
Fixed advertising of NetCdfData availability.


Revision 4389 - Directory Listing
Modified Mon May 6 01:52:05 2013 UTC (4 years, 7 months ago) by caltinay
retab coordinates.py


Revision 4387 - Directory Listing
Modified Thu May 2 00:46:49 2013 UTC (4 years, 7 months ago) by jfenwick
The future is now

Revision 4386 - Directory Listing
Modified Tue Apr 30 02:58:02 2013 UTC (4 years, 7 months ago) by jfenwick
Add missing [0]

Revision 4381 - Directory Listing
Modified Thu Apr 25 01:57:54 2013 UTC (4 years, 7 months ago) by caltinay
Prescribe data scale in tests to silence message.


Revision 4376 - Directory Listing
Modified Mon Apr 22 08:44:45 2013 UTC (4 years, 7 months ago) by gross
domumentation update on coordinate systems - part I

Revision 4373 - Directory Listing
Modified Mon Apr 22 03:16:24 2013 UTC (4 years, 7 months ago) by gross
more on geodetic coordinates

Revision 4372 - Directory Listing
Modified Mon Apr 22 00:02:36 2013 UTC (4 years, 7 months ago) by caltinay
Retab...


Revision 4367 - Directory Listing
Modified Wed Apr 17 09:55:25 2013 UTC (4 years, 8 months ago) by plaub
Allow access to the individual components of the weighted sum cost function.


Revision 4365 - Directory Listing
Modified Wed Apr 17 03:46:22 2013 UTC (4 years, 8 months ago) by caltinay
Skip tests for #ranks > 1 again.


Revision 4364 - Directory Listing
Modified Wed Apr 17 01:56:00 2013 UTC (4 years, 8 months ago) by caltinay
Decorated some test cases.


Revision 4363 - Directory Listing
Modified Wed Apr 17 01:07:38 2013 UTC (4 years, 8 months ago) by caltinay
retab coordinates.py.


Revision 4362 - Directory Listing
Modified Tue Apr 16 04:37:13 2013 UTC (4 years, 8 months ago) by caltinay
Implemented NumpyData downunder source (w/ tests).
Added check of data dimensionality to domainbuilder since data_dim must equal
domain_dim-1 at the moment.


Revision 4359 - Directory Listing
Modified Fri Apr 12 04:54:20 2013 UTC (4 years, 8 months ago) by gross
more on coordinate systems

Revision 4358 - Directory Listing
Modified Fri Apr 12 04:54:00 2013 UTC (4 years, 8 months ago) by gross
more on coordinate systems

Revision 4356 - Directory Listing
Modified Tue Apr 9 00:15:59 2013 UTC (4 years, 8 months ago) by caltinay
Retabbed file for py3 pleasure.


Revision 4344 - Directory Listing
Modified Wed Mar 27 07:58:34 2013 UTC (4 years, 8 months ago) by gross
fix potential at botttom added.

Revision 4343 - Directory Listing
Modified Wed Mar 27 06:44:36 2013 UTC (4 years, 8 months ago) by gross
 

Revision 4311 - Directory Listing
Modified Tue Mar 12 04:26:24 2013 UTC (4 years, 9 months ago) by jfenwick
gracefully end if pyproj is not installed

Revision 4292 - Directory Listing
Modified Thu Mar 7 22:39:32 2013 UTC (4 years, 9 months ago) by caltinay
Broken? It ain't broken ;-) Sorry Joel.


Revision 4287 - Directory Listing
Modified Thu Mar 7 05:26:44 2013 UTC (4 years, 9 months ago) by caltinay
Removed simpleGeoMagnetic field function from doco and example source.


Revision 4285 - Directory Listing
Modified Thu Mar 7 01:08:43 2013 UTC (4 years, 9 months ago) by caltinay
Corrected some spelling.


Revision 4283 - Directory Listing
Modified Thu Mar 7 00:11:36 2013 UTC (4 years, 9 months ago) by caltinay
Minor epydoc fixes.


Revision 4277 - Directory Listing
Modified Wed Mar 6 01:30:41 2013 UTC (4 years, 9 months ago) by caltinay
Implemented claimed support for mixing data with different resolutions.


Revision 4273 - Directory Listing
Modified Tue Mar 5 04:14:44 2013 UTC (4 years, 9 months ago) by caltinay
More doco updates and change to the return value of minimizers.


Revision 4272 - Directory Listing
Modified Tue Mar 5 01:06:45 2013 UTC (4 years, 9 months ago) by caltinay
Finished gravity part in cookbook. Started review of class descriptions.


Revision 4270 - Directory Listing
Modified Mon Mar 4 04:01:28 2013 UTC (4 years, 9 months ago) by caltinay
Corrected test for modified handling of ER Mapper origin.


Revision 4267 - Directory Listing
Modified Fri Mar 1 04:50:54 2013 UTC (4 years, 9 months ago) by caltinay
Updated inversion example scripts, added ER Mapper data, checked results
and corrected some issues. Cookbook does not reflect the changes yet.


Revision 4263 - Directory Listing
Modified Thu Feb 28 05:59:04 2013 UTC (4 years, 9 months ago) by caltinay
No more xrange in downunder.


Revision 4262 - Directory Listing
Modified Thu Feb 28 05:49:11 2013 UTC (4 years, 9 months ago) by caltinay
removed use of xrange and hack.


Revision 4239 - Directory Listing
Modified Fri Feb 22 00:35:01 2013 UTC (4 years, 9 months ago) by caltinay
initialize utm zone in er mapper reader.


Revision 4238 - Directory Listing
Modified Thu Feb 21 09:58:49 2013 UTC (4 years, 9 months ago) by jfenwick
fixed some relative imports and uses of xrange

Revision 4237 - Directory Listing
Modified Thu Feb 21 07:27:36 2013 UTC (4 years, 9 months ago) by jfenwick
Fixed bad tabbing so this revision works with python3 or clang.
(clang at least up to the tests which need pyproj)


Revision 4234 - Directory Listing
Modified Thu Feb 21 04:00:31 2013 UTC (4 years, 9 months ago) by gross
typo fixed

Revision 4227 - Directory Listing
Modified Wed Feb 20 03:10:50 2013 UTC (4 years, 9 months ago) by caltinay
ER Mapper data source updates.


Revision 4213 - Directory Listing
Modified Tue Feb 19 01:16:29 2013 UTC (4 years, 9 months ago) by caltinay
Some cleanup and more consistent logging.


Revision 4212 - Directory Listing
Modified Tue Feb 19 00:11:28 2013 UTC (4 years, 9 months ago) by caltinay
Even friendlier message when pyproj is not installed but required.


Revision 4211 - Directory Listing
Modified Mon Feb 18 23:54:46 2013 UTC (4 years, 9 months ago) by caltinay
Implemented interpolation from Reduced[Face]Elements to [Face]Elements and
changed regularization to compute gradient on Function instead of
ReducedFunction. Results differ slightly so this should help with the accuracy.


Revision 4206 - Directory Listing
Modified Sun Feb 17 23:32:07 2013 UTC (4 years, 9 months ago) by caltinay
Import minimizers by default so the exception classes are exposed.


Revision 4201 - Directory Listing
Modified Thu Feb 14 06:40:01 2013 UTC (4 years, 10 months ago) by caltinay
DomainBuilder now ensures all data is in same UTM zone (with test).


Revision 4197 - Directory Listing
Modified Wed Feb 13 05:53:19 2013 UTC (4 years, 10 months ago) by caltinay
Changes to netCDF data source:
-removed assumptions
-added parameters to override data/error variable names, scale factor and null
value.


Revision 4196 - Directory Listing
Modified Wed Feb 13 00:58:37 2013 UTC (4 years, 10 months ago) by caltinay
Small fix so ERS files with DOS newline are parsed correctly.


Revision 4179 - Directory Listing
Modified Thu Jan 31 04:30:50 2013 UTC (4 years, 10 months ago) by caltinay
More doco.


Revision 4178 - Directory Listing
Modified Thu Jan 31 03:18:56 2013 UTC (4 years, 10 months ago) by caltinay
Some more doco.


Revision 4175 - Directory Listing
Modified Wed Jan 30 05:01:50 2013 UTC (4 years, 10 months ago) by caltinay
joint netcdf example and some minor fixes to other example/test case.


Revision 4174 - Directory Listing
Modified Wed Jan 30 03:21:27 2013 UTC (4 years, 10 months ago) by caltinay
ripley's readBinaryGrid and readNcGrid now filter out NaN leaving the relevant
destination data points untouched.


Revision 4162 - Directory Listing
Modified Thu Jan 24 03:53:19 2013 UTC (4 years, 10 months ago) by caltinay
Added missing example file to display netcdf data.


Revision 4154 - Directory Listing
Modified Tue Jan 22 09:30:23 2013 UTC (4 years, 10 months ago) by jfenwick
Round 1 of copyright fixes

Revision 4153 - Directory Listing
Modified Tue Jan 22 01:57:50 2013 UTC (4 years, 10 months ago) by gross
no driver example added. Doe not work yet.

Revision 4152 - Directory Listing
Modified Tue Jan 22 00:29:03 2013 UTC (4 years, 10 months ago) by caltinay
Moved figures to subdirectory.


Revision 4150 - Directory Listing
Modified Mon Jan 21 04:14:24 2013 UTC (4 years, 10 months ago) by caltinay
Raise an exception if some methods are called after domain creation.


Revision 4145 - Directory Listing
Modified Fri Jan 18 00:51:49 2013 UTC (4 years, 10 months ago) by caltinay
Checkpoint.


Revision 4143 - Directory Listing
Modified Thu Jan 17 08:48:47 2013 UTC (4 years, 10 months ago) by gross
documentation of minimizer update plus clarification of notations on the code

Revision 4142 - Directory Listing
Modified Tue Jan 15 09:06:06 2013 UTC (4 years, 11 months ago) by gross
documentation of inversion cost function added

Revision 4140 - Directory Listing
Modified Tue Jan 15 02:34:41 2013 UTC (4 years, 11 months ago) by caltinay
Updated example inversion files.


Revision 4132 - Directory Listing
Modified Fri Jan 11 05:46:49 2013 UTC (4 years, 11 months ago) by caltinay
Range of epydoc fixes.


Revision 4131 - Directory Listing
Modified Fri Jan 11 03:54:16 2013 UTC (4 years, 11 months ago) by gross
documentaion of inversion driver API added.

Revision 4128 - Directory Listing
Modified Thu Jan 10 02:04:08 2013 UTC (4 years, 11 months ago) by caltinay
Use fixed low number of iterations for the callback test.


Revision 4127 - Directory Listing
Modified Thu Jan 10 00:46:56 2013 UTC (4 years, 11 months ago) by azadeh
add documentation for gravity.


Revision 4125 - Directory Listing
Modified Wed Jan 2 06:15:00 2013 UTC (4 years, 11 months ago) by gross
some fixes in the inversion set-up

Revision 4124 - Directory Listing
Modified Fri Dec 21 01:35:43 2012 UTC (4 years, 11 months ago) by gross
joint inversion added

Revision 4123 - Directory Listing
Modified Thu Dec 20 23:47:55 2012 UTC (4 years, 11 months ago) by gross
small fix

Revision 4122 - Directory Listing
Modified Thu Dec 20 05:42:35 2012 UTC (4 years, 11 months ago) by gross
More work towards joint inversion. There is now one class for inversion cost function which can handle all relevant cases 
for a single model inversion, cross gradient case and functional dependence of physical parameters.



Revision 4121 - Directory Listing
Modified Wed Dec 19 00:24:50 2012 UTC (4 years, 11 months ago) by gross
changes to the boundary conditions.

Revision 4120 - Directory Listing
Modified Tue Dec 18 04:49:37 2012 UTC (4 years, 11 months ago) by gross
some improvements to the robutness of the minimizer:
  a break down in the orthogonalization is hnadles via a restart.
  a restart can now be set manually
  the iteration throughs now an exception in case of failure.

It is also possible to set the density anomaly to zero for regions below a certain depth. 





Revision 4117 - Directory Listing
Modified Fri Dec 14 07:29:35 2012 UTC (5 years ago) by gross
some adjustments with names

Revision 4116 - Directory Listing
Modified Fri Dec 14 07:21:14 2012 UTC (5 years ago) by gross
tests for oscillatory data added.

Revision 4115 - Directory Listing
Modified Fri Dec 14 04:48:48 2012 UTC (5 years ago) by gross
terminolgy for magnetic flux density clarified. clean up on synthetic data

Revision 4114 - Directory Listing
Modified Fri Dec 14 04:24:46 2012 UTC (5 years ago) by caltinay
Time to remove deprecated saveVTK/DX methods from Data and Domain.


Revision 4109 - Directory Listing
Modified Fri Dec 14 01:08:52 2012 UTC (5 years ago) by caltinay
Fixed tests.


Revision 4108 - Directory Listing
Modified Thu Dec 13 06:38:11 2012 UTC (5 years ago) by caltinay
Changed methods to add padding areas.


Revision 4106 - Directory Listing
Modified Thu Dec 13 05:08:44 2012 UTC (5 years ago) by gross
some clarification on how to handle back ground magnetic field plus renaming of SyntheticData

Revision 4105 - Directory Listing
Modified Thu Dec 13 04:11:59 2012 UTC (5 years ago) by caltinay
Updated test to reflect interface changes.


Revision 4102 - Directory Listing
Modified Wed Dec 12 06:17:03 2012 UTC (5 years ago) by gross
more improvements on rescaling of weights. We now try to balance the gradients rather than the values.

Revision 4100 - Directory Listing
Modified Tue Dec 11 06:55:20 2012 UTC (5 years ago) by gross
minimizer uses now a relative change to solution to terminate iteration. Gravity still has problems

Revision 4099 - Directory Listing
Modified Tue Dec 11 04:04:47 2012 UTC (5 years ago) by gross
Clarification of terminology and scaling.
Joint inversion is not working yet.


Revision 4098 - Directory Listing
Modified Fri Dec 7 03:45:20 2012 UTC (5 years ago) by caltinay
Unbroke my breakage.


Revision 4097 - Directory Listing
Modified Fri Dec 7 01:18:35 2012 UTC (5 years ago) by caltinay
Minor edits.


Revision 4095 - Directory Listing
Modified Wed Dec 5 05:32:22 2012 UTC (5 years ago) by caltinay
A bit of doco cleanup.


Revision 4094 - Directory Listing
Modified Mon Dec 3 23:28:38 2012 UTC (5 years ago) by caltinay
Fixed typo.


Revision 4093 - Directory Listing
Modified Fri Nov 30 04:52:01 2012 UTC (5 years ago) by gross
There is now a coherent implementation of gravity and magnetic forward model including an update of the user's guide.

Revision 4092 - Directory Listing
Modified Thu Nov 29 10:42:39 2012 UTC (5 years ago) by caltinay
Minor change. Test commit.


Revision 4083 - Directory Listing
Modified Mon Nov 19 22:19:42 2012 UTC (5 years ago) by caltinay
removed manually set weights from scripts.


Revision 4081 - Directory Listing
Modified Mon Nov 19 02:35:18 2012 UTC (5 years ago) by caltinay
Updated unit test to test LinearMapping instead of old ScalingMapping


Revision 4080 - Directory Listing
Modified Mon Nov 19 01:45:38 2012 UTC (5 years ago) by jfenwick
Epydoc fixes


Revision 4079 - Directory Listing
Modified Fri Nov 16 07:59:01 2012 UTC (5 years, 1 month ago) by gross
some modifications to scaling in downunder. still not perfect.

Revision 4078 - Directory Listing
Modified Fri Nov 16 07:50:49 2012 UTC (5 years, 1 month ago) by jfenwick
Unit tests for binary install with no scons and no source tree.
Script for installing and testing a .deb within a chroot.




Revision 4077 - Directory Listing
Modified Fri Nov 16 04:31:02 2012 UTC (5 years, 1 month ago) by caltinay
Minor change.


Revision 4076 - Directory Listing
Modified Thu Nov 15 03:45:24 2012 UTC (5 years, 1 month ago) by gross
    def getDirectionalDerivative(self, m, d, grad_m):
        

Revision 4074 - Directory Listing
Modified Thu Nov 15 03:30:59 2012 UTC (5 years, 1 month ago) by gross
this will break the downundermodule: major revision of the classes.

Revision 4063 - Directory Listing
Modified Fri Nov 9 06:15:00 2012 UTC (5 years, 1 month ago) by caltinay
Fixed a typo in method description.


Revision 4061 - Directory Listing
Modified Fri Nov 9 04:05:28 2012 UTC (5 years, 1 month ago) by caltinay
Updated data source test cases.


Revision 4060 - Directory Listing
Modified Fri Nov 9 03:50:19 2012 UTC (5 years, 1 month ago) by caltinay
-Overhaul of inversion data sources. Domain is now generated and managed by separate class.
-Removed UBCDataSource which was only used for testing.
-Updated example scripts.


Revision 4058 - Directory Listing
Modified Fri Nov 2 06:47:06 2012 UTC (5 years, 1 month ago) by caltinay
-Ripley now checks for input fs when calling gradient
-interactive mode works again when filename is supplied (typo)
-forward model PDE sets symmetry on now


Revision 4053 - Directory Listing
Modified Wed Oct 31 07:27:35 2012 UTC (5 years, 1 month ago) by caltinay
Do not fix potential on sides of domain by default.


Revision 4050 - Directory Listing
Modified Wed Oct 31 01:01:24 2012 UTC (5 years, 1 month ago) by caltinay
Changed initial Hessian in magnetic test and removed some debug output.


Revision 4049 - Directory Listing
Modified Wed Oct 31 00:50:50 2012 UTC (5 years, 1 month ago) by caltinay
Fixed typos.


Revision 4048 - Directory Listing
Modified Tue Oct 30 21:54:15 2012 UTC (5 years, 1 month ago) by gross
fixed modification in the DataSource creator

Revision 4047 - Directory Listing
Modified Tue Oct 30 09:10:07 2012 UTC (5 years, 1 month ago) by gross
More on magnetic inversion

Revision 4044 - Directory Listing
Modified Tue Oct 30 03:35:17 2012 UTC (5 years, 1 month ago) by caltinay
Some doco fixes for downunder.


Revision 4041 - Directory Listing
Modified Sun Oct 28 23:42:35 2012 UTC (5 years, 1 month ago) by caltinay
Fixed a typo


Revision 4040 - Directory Listing
Modified Sun Oct 28 22:37:45 2012 UTC (5 years, 1 month ago) by jfenwick
Some py3 changes that didn't get committed for some reason


Revision 4039 - Directory Listing
Modified Fri Oct 26 07:34:06 2012 UTC (5 years, 1 month ago) by gross
magnetic inversion added

Revision 4037 - Directory Listing
Modified Fri Oct 26 03:04:30 2012 UTC (5 years, 1 month ago) by gross
some modifictaions to make implementation for magnetic inversion easier

Revision 4034 - Directory Listing
Modified Thu Oct 25 02:54:01 2012 UTC (5 years, 1 month ago) by caltinay
Fixes to inversion. Using resetRightHandSideCoefficients() now.


Revision 4033 - Directory Listing
Modified Wed Oct 24 08:14:41 2012 UTC (5 years, 1 month ago) by gross
some typos fixed.

Revision 4032 - Directory Listing
Modified Wed Oct 24 08:06:15 2012 UTC (5 years, 1 month ago) by gross
Gravity inversion is disconnect from DataSource objects now in order to allow for more  flexibility
when it comes to the definition of of Mapping and Regulariztion. GravityInversion does not hold a reference to the datasource object anymore.

use   inv=GravityInversion()
      inv.setUp(datasource) 

rather than inv.setDataSource(datasource); inv.setUp()




Revision 4021 - Directory Listing
Modified Mon Oct 15 02:31:00 2012 UTC (5 years, 2 months ago) by jfenwick
Doco fixes.
Unit test fix for sys.version_info type change


Revision 4020 - Directory Listing
Modified Thu Oct 11 22:27:33 2012 UTC (5 years, 2 months ago) by caltinay
Removed print() that slipped in in last commit.


Revision 4019 - Directory Listing
Modified Thu Oct 11 08:12:55 2012 UTC (5 years, 2 months ago) by jfenwick
More tabbing errors,
range/xrange
...

Revision 4016 - Directory Listing
Modified Tue Oct 9 03:50:27 2012 UTC (5 years, 2 months ago) by caltinay
Skip data source tests under MPI for now as there is no straightforward way
of comparing the data (saveVTK appears to be the best option).


Revision 4014 - Directory Listing
Modified Thu Oct 4 03:28:35 2012 UTC (5 years, 2 months ago) by caltinay
Changed data source to use ripley's netCDF reader,
added tests and changed ERMapper test to have different x and y sizes.


Revision 4012 - Directory Listing
Modified Wed Oct 3 02:25:10 2012 UTC (5 years, 2 months ago) by caltinay
Initialize X_reduced in forward model to avoid issues later on.


Revision 4011 - Directory Listing
Modified Wed Oct 3 00:47:55 2012 UTC (5 years, 2 months ago) by caltinay
Updated test reference file.


Revision 4009 - Directory Listing
Modified Tue Oct 2 05:53:37 2012 UTC (5 years, 2 months ago) by caltinay
don't try to flip y-coord in reader. some more fixes and doco.


Revision 4007 - Directory Listing
Modified Tue Oct 2 02:12:01 2012 UTC (5 years, 2 months ago) by caltinay
Doco updates.
Data source paddings now take x,y not xy,z as Z padding can be done by setting
vertical extents.


Revision 4005 - Directory Listing
Modified Fri Sep 28 06:09:03 2012 UTC (5 years, 2 months ago) by caltinay
test fixes, doco updates, annoyance removals.


Revision 3990 - Directory Listing
Modified Tue Sep 25 05:03:20 2012 UTC (5 years, 2 months ago) by caltinay
First set of assorted epydoc fixes/additions.


Revision 3988 - Directory Listing
Modified Mon Sep 24 01:08:19 2012 UTC (5 years, 2 months ago) by caltinay
Scale coordinates if pyproj is not available


Revision 3987 - Directory Listing
Modified Sun Sep 23 23:24:37 2012 UTC (5 years, 2 months ago) by caltinay
Fix to test which fails when ripley adjusts number of elements (domain decomp.)


Revision 3986 - Directory Listing
Modified Sun Sep 23 23:01:10 2012 UTC (5 years, 2 months ago) by caltinay
Added explicit cast to make osx happy.


Revision 3985 - Directory Listing
Modified Fri Sep 21 06:44:17 2012 UTC (5 years, 2 months ago) by caltinay
Unit test for ER Mapper reader.


Revision 3983 - Directory Listing
Modified Fri Sep 21 06:41:03 2012 UTC (5 years, 2 months ago) by caltinay
Use ReducedFunction for data sources.


Revision 3982 - Directory Listing
Modified Fri Sep 21 03:23:22 2012 UTC (5 years, 2 months ago) by jfenwick
More edits + removing pyvisi from trunk


Revision 3981 - Directory Listing
Modified Fri Sep 21 02:47:54 2012 UTC (5 years, 2 months ago) by jfenwick
First pass of updating copyright notices

Revision 3980 - Directory Listing
Modified Fri Sep 21 01:55:39 2012 UTC (5 years, 2 months ago) by caltinay
Now using NullCellValue to initialise data object for ERS reader.


Revision 3972 - Directory Listing
Modified Wed Sep 19 03:08:39 2012 UTC (5 years, 2 months ago) by caltinay
Can now constrain sides of domain.


Revision 3971 - Directory Listing
Modified Wed Sep 19 02:55:35 2012 UTC (5 years, 2 months ago) by caltinay
Implemented binary grid reader in ripley which is now used in ER Mapper source.
Interface/details likely to change but need to get this running now.


Revision 3966 - Directory Listing
Modified Mon Sep 17 00:45:39 2012 UTC (5 years, 3 months ago) by caltinay
Changed unit scale for ER Mapper files. Fixed an issue with UBC source.


Revision 3965 - Directory Listing
Modified Fri Sep 14 01:23:17 2012 UTC (5 years, 3 months ago) by caltinay
Data sources have to end up in the Function fs or we get into trouble when
interpolating. Now using setValueOfDataPoint() which doesn't seem to slow
things down too much.


Revision 3964 - Directory Listing
Modified Thu Sep 13 03:49:55 2012 UTC (5 years, 3 months ago) by caltinay
Hopefully this will fix the interpolation in data sources.


Revision 3960 - Directory Listing
Modified Mon Sep 10 01:39:40 2012 UTC (5 years, 3 months ago) by caltinay
Added accessors to fwd model, regularization and cost function plus access
to gravity survey data.


Revision 3959 - Directory Listing
Modified Fri Sep 7 04:48:07 2012 UTC (5 years, 3 months ago) by caltinay
support for geodetic coordinates in ER Mapper files. Correction to UTM
conversion (now assumes southern hemisphere).


Revision 3958 - Directory Listing
Modified Fri Sep 7 02:56:42 2012 UTC (5 years, 3 months ago) by caltinay
Fixes to netcdf data source and new ERS (ER Mapper) datasource.


Revision 3957 - Directory Listing
Modified Wed Sep 5 23:49:23 2012 UTC (5 years, 3 months ago) by caltinay
Do not require pyproj module-wide. Print a warning if it is not available but
needed instead of raising an exception.


Revision 3956 - Directory Listing
Modified Wed Sep 5 04:57:43 2012 UTC (5 years, 3 months ago) by caltinay
Fixes to netcdf reader for inversions.


Revision 3952 - Directory Listing
Modified Sun Sep 2 23:42:25 2012 UTC (5 years, 3 months ago) by caltinay
Made a test slightly more relaxed since roundoff errors caused it to fail on
one system.


Revision 3951 - Directory Listing
Modified Tue Aug 28 23:58:08 2012 UTC (5 years, 3 months ago) by caltinay
Fixed tests with python versions <2.7.


Revision 3950 - Directory Listing
Modified Fri Aug 24 06:10:02 2012 UTC (5 years, 3 months ago) by caltinay
More tests and corrections in the alternative minimizers.


Revision 3949 - Directory Listing
Modified Fri Aug 24 02:37:47 2012 UTC (5 years, 3 months ago) by caltinay
Added tests for mappings.


Revision 3948 - Directory Listing
Modified Fri Aug 24 01:01:34 2012 UTC (5 years, 3 months ago) by caltinay
Some interface changes to make the inversion more flexible.


Revision 3947 - Directory Listing
Modified Wed Aug 22 23:19:10 2012 UTC (5 years, 3 months ago) by caltinay
Compiling and installing downunder module now. Adjusted import statements
accordingly. Added a gravity test run.


Revision 3946 - Directory Listing
Added Wed Aug 22 02:08:12 2012 UTC (5 years, 3 months ago) by caltinay
Initial import of inversion code from devteam area, rev. 51.
Nothing is scons built/installed/tested yet.


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