/[escript]/trunk/dudley/src/CPPAdapter/dudleycpp.cpp
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Contents of /trunk/dudley/src/CPPAdapter/dudleycpp.cpp

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Revision 1801 - (show annotations)
Fri Sep 19 01:37:09 2008 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File size: 7111 byte(s)
Fixed serialization of I/O for MPI...code didn't compile without MPI

1
2 /* $Id$ */
3
4 /*******************************************************
5 *
6 * Copyright 2003-2007 by ACceSS MNRF
7 * Copyright 2007 by University of Queensland
8 *
9 * http://esscc.uq.edu.au
10 * Primary Business: Queensland, Australia
11 * Licensed under the Open Software License version 3.0
12 * http://www.opensource.org/licenses/osl-3.0.php
13 *
14 *******************************************************/
15
16 #ifdef PASO_MPI
17 #include <mpi.h>
18 #include "paso/Paso_MPI.h"
19 #endif
20 extern "C" {
21 #include "../Finley.h"
22 }
23
24 #include "MeshAdapter.h"
25 #include "MeshAdapterFactory.h"
26 #include "SystemMatrixAdapter.h"
27 #include "TransportProblemAdapter.h"
28
29 #include "FinleyAdapterException.h"
30 // #include "esysUtils/EsysException.h"
31 #include "esysUtils/esysExceptionTranslator.h"
32
33 #include "escript/AbstractContinuousDomain.h"
34
35 #include <boost/python.hpp>
36 #include <boost/python/module.hpp>
37 #include <boost/python/def.hpp>
38 #include <boost/python/detail/defaults_gen.hpp>
39
40 using namespace boost::python;
41
42 /**
43 \page finley Finley
44 Finley is the python module name that contains the interfaces
45 to the C++ wrapper to finley.
46
47 \version 1.0.0
48
49 \section class_desc Class Description:
50 Data
51
52 \section class_limits Class Limitations:
53 None
54
55 \section class_conds Class Conditions of Use:
56 None
57
58 \section throws Throws:
59 None
60
61 */
62
63 //
64 // The BOOST_PYTHON_FUNCTION_OVERLOADS macro generates function overloads for optional
65 // arguments to the respective finley functions.
66 // !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
67 //
68 // NOTE: If the number of arguments to the finley functions change
69 // the magic numbers in the BOOST_PYTHON_FUNCTION_OVERLOADS call
70 // must change.
71 //
72 // !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
73 // BOOST_PYTHON_FUNCTION_OVERLOADS(readMesh_overloads,finley::readMesh,1,2)
74 // BOOST_PYTHON_FUNCTION_OVERLOADS(brick_overloads,finley::brick,0,12)
75 // BOOST_PYTHON_FUNCTION_OVERLOADS(rectangle_overloads,finley::rectangle,0,9)
76 // BOOST_PYTHON_FUNCTION_OVERLOADS(interval_overloads,finley::interval,0,6)
77 // BOOST_PYTHON_FUNCTION_OVERLOADS(glueFaces_overloads,finley::glueFaces,1,3)
78 // BOOST_PYTHON_FUNCTION_OVERLOADS(joinFaces_overloads,finley::joinFaces,1,3)
79
80 BOOST_PYTHON_MODULE(finleycpp)
81 {
82
83 //
84 // NOTE: The return_value_policy is necessary for functions that
85 // return pointers.
86 //
87 register_exception_translator<finley::FinleyAdapterException>(&(esysUtils::esysExceptionTranslator));
88
89 def("LoadMesh",finley::loadMesh,
90 (arg("fileName")="file.nc"),
91 return_value_policy<manage_new_object>());
92 def("ReadMesh",finley::readMesh,
93 (arg("fileName")="file.fly",arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true),
94 return_value_policy<manage_new_object>());
95 def("ReadMeshMPI",finley::readMeshMPI,
96 (arg("fileName")="file.fly",arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true),
97 return_value_policy<manage_new_object>());
98
99 def("ReadGmsh",finley::readGmsh,
100 (arg("fileName")="file.msh",arg("numDim"), arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true),
101 return_value_policy<manage_new_object>());
102
103 def ("Brick",finley::brick,
104 (arg("n0")=1,arg("n1")=1,arg("n2")=1,
105 arg("order")=1,
106 arg("l0")=1.0,arg("l1")=1.0,arg("l2")=1.0,
107 arg("periodic0")=false,arg("periodic1")=false,arg("periodic2")=false,
108 arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1,
109 arg("useElementsOnFace")=false,
110 arg("useFullElementOrder")=false,
111 arg("optimize")=false),
112 return_value_policy<manage_new_object>());
113
114 def ("Rectangle",finley::rectangle,
115 (arg("n0")=1,arg("n1")=1,arg("order")=1,
116 arg("l0")=1.0,arg("l1")=1.0,
117 arg("periodic0")=false,arg("periodic1")=false,
118 arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1,
119 arg("useElementsOnFace")=false,
120 arg("useFullElementOrder")=false,
121 arg("optimize")=false),
122 return_value_policy<manage_new_object>());
123
124 def("Merge",finley::meshMerge,
125 return_value_policy<manage_new_object>());
126
127 def("GlueFaces",finley::glueFaces,
128 (arg("safetyFactor")=0.2,
129 arg("tolerance")=1.e-8,
130 arg("optimize")=true),
131 return_value_policy<manage_new_object>());
132
133 def("JoinFaces",finley::joinFaces,
134 (arg("safetyFactor")=0.2,
135 arg("tolerance")=1.e-8,
136 arg("optimize")=true),
137 return_value_policy<manage_new_object>());
138
139
140
141 class_<finley::MeshAdapter, bases<escript::AbstractContinuousDomain> >
142 ("MeshAdapter",init<optional <Finley_Mesh*> >())
143 .def(init<const finley::MeshAdapter&>())
144 .def("write",&finley::MeshAdapter::write)
145 .def("print_mesh_info",&finley::MeshAdapter::Print_Mesh_Info,(arg("full")=false))
146 .def("dump",&finley::MeshAdapter::dump)
147 .def("getDescription",&finley::MeshAdapter::getDescription)
148 .def("getDim",&finley::MeshAdapter::getDim)
149 .def("getDataShape",&finley::MeshAdapter::getDataShape)
150 .def("getNumDataPointsGlobal",&finley::MeshAdapter::getNumDataPointsGlobal)
151 .def("addPDEToSystem",&finley::MeshAdapter::addPDEToSystem)
152 .def("addPDEToLumpedSystem",&finley::MeshAdapter::addPDEToLumpedSystem)
153 .def("addPDEToRHS",&finley::MeshAdapter::addPDEToRHS)
154 .def("addPDEToTransportProblem",&finley::MeshAdapter::addPDEToTransportProblem)
155 .def("newOperator",&finley::MeshAdapter::newSystemMatrix)
156 .def("newTransportProblem",&finley::MeshAdapter::newTransportProblem)
157 .def("getSystemMatrixTypeId",&finley::MeshAdapter::getSystemMatrixTypeId)
158 .def("setX",&finley::MeshAdapter::setNewX)
159 .def("getX",&finley::MeshAdapter::getX)
160 .def("getNormal",&finley::MeshAdapter::getNormal)
161 .def("getSize",&finley::MeshAdapter::getSize)
162 .def("saveDX",&finley::MeshAdapter::saveDX)
163 .def("saveVTK",&finley::MeshAdapter::saveVTK)
164 .def("setTagMap",&finley::MeshAdapter::setTagMap)
165 .def("getTag",&finley::MeshAdapter::getTag)
166 .def("isValidTagName",&finley::MeshAdapter::isValidTagName)
167 .def("showTagNames",&finley::MeshAdapter::showTagNames)
168 .def("getMPISize",&finley::MeshAdapter::getMPISize)
169 .def("getMPIRank",&finley::MeshAdapter::getMPIRank);
170
171 class_<finley::SystemMatrixAdapter, bases<escript::AbstractSystemMatrix> >
172 ("OperatorAdapter",no_init)
173 .def("print_matrix_info",&finley::SystemMatrixAdapter::Print_Matrix_Info,(arg("full")=false))
174 .def("nullifyRowsAndCols",&finley::SystemMatrixAdapter::nullifyRowsAndCols)
175 .def("resetValues",&finley::SystemMatrixAdapter::resetValues)
176 .def("saveMM",&finley::SystemMatrixAdapter::saveMM)
177 .def("saveHB",&finley::SystemMatrixAdapter::saveHB);
178
179 class_<finley::TransportProblemAdapter, bases<escript::AbstractTransportProblem> >
180 ("TransportProblemAdapter",no_init)
181 .def("getSafeTimeStepSize",&finley::TransportProblemAdapter::getSafeTimeStepSize)
182 .def("resetTransport",&finley::TransportProblemAdapter::resetTransport);
183 }

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