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Revision 6119 - Directory Listing
Modified Sun Apr 3 23:36:59 2016 UTC (18 months, 2 weeks ago) by caltinay
merging trilinos branch to trunk.
We can now build with trilinos and use it instead of paso for single PDEs.
There are some more things to be done...


Revision 6112 - Directory Listing
Modified Thu Mar 31 09:40:10 2016 UTC (18 months, 2 weeks ago) by jfenwick
Relicense all the things!



Revision 6093 - Directory Listing
Modified Thu Mar 24 07:18:55 2016 UTC (18 months, 3 weeks ago) by jfenwick
Removing unintended inclusions in __all__ for esys.escript

Patched some unit tests which were affected.


Revision 5863 - Directory Listing
Modified Wed Jan 13 02:25:48 2016 UTC (21 months ago) by jfenwick
Copyright dates updated.
\version for doxygen to read


Revision 5828 - Directory Listing
Modified Mon Nov 23 00:43:19 2015 UTC (22 months, 3 weeks ago) by jfenwick
Provide access to splitworld via the escript package


Revision 5740 - Directory Listing
Modified Mon Jul 13 10:28:24 2015 UTC (2 years, 3 months ago) by jfenwick
Remove blanket import of escript into inversions.
Modify __all__ to allow "hiding" some members of escript from a blanket import


Revision 5707 - Directory Listing
Modified Mon Jun 29 03:59:06 2015 UTC (2 years, 3 months ago) by sshaw
adding copyright headers to files without copyright info, moved header to top of file in some cases where it wasn't

Revision 5706 - Directory Listing
Modified Mon Jun 29 03:41:36 2015 UTC (2 years, 3 months ago) by sshaw
all python files now force use of python3 prints and division syntax to stop sneaky errors appearing in py3 environs

Revision 5593 - Directory Listing
Modified Fri Apr 24 01:36:26 2015 UTC (2 years, 5 months ago) by jfenwick
Fixing institution name to comply with policy

Revision 5562 - Directory Listing
Modified Thu Mar 26 01:36:21 2015 UTC (2 years, 6 months ago) by jfenwick
More split world functions

Revision 5448 - Directory Listing
Modified Fri Feb 6 05:31:37 2015 UTC (2 years, 8 months ago) by jfenwick
Updating all the dates

Revision 4884 - Directory Listing
Modified Thu Apr 24 04:47:39 2014 UTC (3 years, 5 months ago) by jduplessis
this file is added so that we can import Symbolic by doing:
    import esys.escript.symbolic as symb instead of 
    import esys.escriptcore.symbolic as symb

the one line containined in the file is on line five for reasons prettiness



Revision 4657 - Directory Listing
Modified Thu Feb 6 06:12:20 2014 UTC (3 years, 8 months ago) by jfenwick
I changed some files.
Updated copyright notices, added GeoComp.




Revision 4525 - Directory Listing
Modified Fri Aug 30 09:14:35 2013 UTC (4 years, 1 month ago) by jfenwick
try this

Revision 4508 - Directory Listing
Modified Wed Jul 24 04:23:22 2013 UTC (4 years, 2 months ago) by jfenwick
Moving to escriptcore

Revision 4504 - Directory Listing
Modified Mon Jul 22 02:04:34 2013 UTC (4 years, 2 months ago) by caltinay
Fix to verbose parameter reporting in linear pdes


Revision 4481 - Directory Listing
Modified Mon Jun 24 06:22:27 2013 UTC (4 years, 3 months ago) by caltinay
Hmm. That's a nasty undocumented "feature"...


Revision 4480 - Directory Listing
Modified Mon Jun 24 05:09:52 2013 UTC (4 years, 3 months ago) by caltinay
More valgrind suppressions and memory leak fixes identified in various places.


Revision 4478 - Directory Listing
Modified Thu Jun 20 06:34:02 2013 UTC (4 years, 3 months ago) by caltinay
Moved appendRankToFilename to header within namespace to remove code duplication
and fixed memory leaks this way.


Revision 4477 - Directory Listing
Modified Thu Jun 20 02:41:28 2013 UTC (4 years, 3 months ago) by caltinay
escript: use scoped_array instead of scoped_ptr
ripley: netcdf returns a copy of an array so use scoped_array
downunder: s/Sperical/Spherical/
scripts: added a few more suppressions


Revision 4474 - Directory Listing
Modified Wed Jun 19 06:44:47 2013 UTC (4 years, 3 months ago) by caltinay
Brought over leak fix, gcc 4.8 fix and mismatched new[]/delete fix from release
branch.


Revision 4454 - Directory Listing
Modified Thu Jun 13 03:12:17 2013 UTC (4 years, 4 months ago) by caltinay
More "delete test output files after checking"


Revision 4448 - Directory Listing
Modified Wed Jun 12 23:05:12 2013 UTC (4 years, 4 months ago) by caltinay
Only one rank should delete file in tests.


Revision 4447 - Directory Listing
Modified Wed Jun 12 13:55:53 2013 UTC (4 years, 4 months ago) by caltinay
Clean up some generated test files.


Revision 4446 - Directory Listing
Modified Tue Jun 11 04:00:15 2013 UTC (4 years, 4 months ago) by caltinay
This should fix the py3 error...


Revision 4441 - Directory Listing
Modified Fri Jun 7 02:23:49 2013 UTC (4 years, 4 months ago) by caltinay
finley now uses Data objects directly instead of going through the C wrapper.


Revision 4421 - Directory Listing
Modified Tue May 21 05:16:39 2013 UTC (4 years, 4 months ago) by caltinay
Finley... there were actually some long-standing errors in the checks.


Revision 4407 - Directory Listing
Modified Tue May 14 05:17:24 2013 UTC (4 years, 5 months ago) by jfenwick
Added output function to arithmetic tuple

Revision 4399 - Directory Listing
Modified Thu May 9 10:46:41 2013 UTC (4 years, 5 months ago) by jfenwick
just fiddling

Revision 4398 - Directory Listing
Modified Thu May 9 08:42:44 2013 UTC (4 years, 5 months ago) by jfenwick
support for supressing doco subpackages. fiddling with one of the imports to try to reduce the number of places where Data appears.  Seriously it looks like we have 8 different Data classes

Revision 4396 - Directory Listing
Modified Wed May 8 09:27:10 2013 UTC (4 years, 5 months ago) by jfenwick
fix extraction script to pick up more classes. Stop models from importing escript into its namespace

Revision 4380 - Directory Listing
Modified Wed Apr 24 23:59:49 2013 UTC (4 years, 5 months ago) by jfenwick
Attempt to help windows

Revision 4369 - Directory Listing
Modified Fri Apr 19 02:32:34 2013 UTC (4 years, 6 months ago) by jfenwick
fix problems revealed on freebsd

Revision 4346 - Directory Listing
Modified Tue Apr 2 04:46:45 2013 UTC (4 years, 6 months ago) by jfenwick
Bringing the changes from doubleplusgood branch.
Can't merge directly because svn doesn't transfer changes to renamed files (mutter grumble).

Revision 4326 - Directory Listing
Modified Wed Mar 20 02:50:46 2013 UTC (4 years, 6 months ago) by caltinay
Removed stray print statement.


Revision 4323 - Directory Listing
Modified Tue Mar 19 00:17:36 2013 UTC (4 years, 7 months ago) by jfenwick
Bringing across changes from release3.3.1. (Version names are set back to Development).

Revision 4286 - Directory Listing
Modified Thu Mar 7 04:28:11 2013 UTC (4 years, 7 months ago) by caltinay
Assorted spelling fixes.


Revision 4285 - Directory Listing
Modified Thu Mar 7 01:08:43 2013 UTC (4 years, 7 months ago) by caltinay
Corrected some spelling.


Revision 4281 - Directory Listing
Modified Wed Mar 6 07:08:36 2013 UTC (4 years, 7 months ago) by gross
typo - sorry

Revision 4264 - Directory Listing
Modified Thu Feb 28 11:32:57 2013 UTC (4 years, 7 months ago) by jfenwick
Trying

Revision 4255 - Directory Listing
Modified Wed Feb 27 03:06:21 2013 UTC (4 years, 7 months ago) by jfenwick
Hopefully, this will address the interpolation problems.

New canInterpolate() function exposed to python which calls probeInterpolation

AbstractDomain now has an additional virtual.
preferredIntrpolationOnDomain()

This will return 0 if interpolation is impossible, 1 if possible and preferred.
It will return -1 if interpolation is possible and preferred in the 
oposite direction.

A value of -1 does not say that the proposed interpolation is possible or not.
Rather it indicates "please use the other way".
If you really _need_ to test it that way, use probeInterpolationOnDomain 



Revision 4242 - Directory Listing
Modified Mon Feb 25 03:16:14 2013 UTC (4 years, 7 months ago) by jfenwick
Allow pure virtual classes to be exported to python.
Temporary fix for a ripley interpolation issue


Revision 4237 - Directory Listing
Modified Thu Feb 21 07:27:36 2013 UTC (4 years, 7 months ago) by jfenwick
Fixed bad tabbing so this revision works with python3 or clang.
(clang at least up to the tests which need pyproj)


Revision 4232 - Directory Listing
Modified Wed Feb 20 08:31:31 2013 UTC (4 years, 7 months ago) by jfenwick
Fixed the WrappedArray class so it doesn't generate warnings


Revision 4226 - Directory Listing
Modified Wed Feb 20 03:07:36 2013 UTC (4 years, 7 months ago) by caltinay
typo.


Revision 4223 - Directory Listing
Modified Wed Feb 20 01:47:26 2013 UTC (4 years, 7 months ago) by caltinay
$#@%%^@(!


Revision 4221 - Directory Listing
Modified Wed Feb 20 01:24:29 2013 UTC (4 years, 7 months ago) by caltinay
The numpy 1.7 macro does not help since the new style API/macros are not
present in 1.6. So when compiling with numpy 1.7 werror needs to be set to
False.


Revision 4219 - Directory Listing
Modified Wed Feb 20 00:26:19 2013 UTC (4 years, 7 months ago) by caltinay
Not sure why, but this fixes all failures in the linearPDE tests with ripley.


Revision 4217 - Directory Listing
Modified Tue Feb 19 06:09:51 2013 UTC (4 years, 7 months ago) by caltinay
numpy 1.7 introduced a warning for deprecation of certain APIs. We have to
acknowledge that to get rid of the warning...


Revision 4190 - Directory Listing
Modified Mon Feb 11 05:10:00 2013 UTC (4 years, 8 months ago) by gross
unit gal added

Revision 4154 - Directory Listing
Modified Tue Jan 22 09:30:23 2013 UTC (4 years, 8 months ago) by jfenwick
Round 1 of copyright fixes

Revision 4126 - Directory Listing
Modified Tue Jan 8 02:37:48 2013 UTC (4 years, 9 months ago) by gross
some work on the level set class. no testing yet.

Revision 4114 - Directory Listing
Modified Fri Dec 14 04:24:46 2012 UTC (4 years, 10 months ago) by caltinay
Time to remove deprecated saveVTK/DX methods from Data and Domain.


Revision 4104 - Directory Listing
Modified Thu Dec 13 03:30:23 2012 UTC (4 years, 10 months ago) by jfenwick
Ensuring we are using new-style classes
This may not be strictly necessary since our code does not depend on the difference.


Revision 4085 - Directory Listing
Modified Tue Nov 20 07:04:11 2012 UTC (4 years, 10 months ago) by jfenwick
nonuniformInterolate and Slope added.
Doco later


Revision 4084 - Directory Listing
Modified Tue Nov 20 06:22:07 2012 UTC (4 years, 10 months ago) by jfenwick
Adding some linebreaks

Revision 4078 - Directory Listing
Modified Fri Nov 16 07:50:49 2012 UTC (4 years, 11 months ago) by jfenwick
Unit tests for binary install with no scons and no source tree.
Script for installing and testing a .deb within a chroot.




Revision 4074 - Directory Listing
Modified Thu Nov 15 03:30:59 2012 UTC (4 years, 11 months ago) by gross
this will break the downundermodule: major revision of the classes.

Revision 4071 - Directory Listing
Modified Tue Nov 13 21:43:11 2012 UTC (4 years, 11 months ago) by gross
small fix

Revision 4069 - Directory Listing
Modified Tue Nov 13 07:47:16 2012 UTC (4 years, 11 months ago) by gross
ArithmeticTuple supports empty data object as components now.

Revision 4046 - Directory Listing
Modified Tue Oct 30 04:43:25 2012 UTC (4 years, 11 months ago) by caltinay
Deprecated saveDX and made sure DeprecationWarnings are shown (py2.7 disabled
those). Also a fix to $BUILD_DIR being non-absolute.


Revision 4039 - Directory Listing
Modified Fri Oct 26 07:34:06 2012 UTC (4 years, 11 months ago) by gross
magnetic inversion added

Revision 4035 - Directory Listing
Modified Thu Oct 25 03:10:14 2012 UTC (4 years, 11 months ago) by caltinay
Tweaked scons files so tests work even when specifying non-absolute build_dir.


Revision 4026 - Directory Listing
Modified Tue Oct 23 03:12:50 2012 UTC (4 years, 11 months ago) by gross
missing file

Revision 4025 - Directory Listing
Modified Mon Oct 22 08:18:47 2012 UTC (4 years, 11 months ago) by gross
 linearPDE.resetRightHandSideCoefficients has been implemented and tested.

Revision 4023 - Directory Listing
Modified Tue Oct 16 04:17:48 2012 UTC (5 years ago) by caltinay
Another fix to the PDE assembly logic in ripley.


Revision 4020 - Directory Listing
Modified Thu Oct 11 22:27:33 2012 UTC (5 years ago) by caltinay
Removed print() that slipped in in last commit.


Revision 4019 - Directory Listing
Modified Thu Oct 11 08:12:55 2012 UTC (5 years ago) by jfenwick
More tabbing errors,
range/xrange
...

Revision 4018 - Directory Listing
Modified Thu Oct 11 04:43:39 2012 UTC (5 years ago) by jfenwick
Used "new" raise syntax in a few places
Fixed some tabbing
Fixed some funnies involving changes to xrange/range
added a quick and nasty __hash__ function to Symbol
   def __hash__(self):
        return id(self)
This does mean that __hash__ and == do not match exactly.   Not sure if that matters for our purposes

Revision 4017 - Directory Listing
Modified Thu Oct 11 03:13:28 2012 UTC (5 years ago) by caltinay
Modified a test so roundoff errors don't cause failures.


Revision 4014 - Directory Listing
Modified Thu Oct 4 03:28:35 2012 UTC (5 years ago) by caltinay
Changed data source to use ripley's netCDF reader,
added tests and changed ERMapper test to have different x and y sizes.


Revision 4009 - Directory Listing
Modified Tue Oct 2 05:53:37 2012 UTC (5 years ago) by caltinay
don't try to flip y-coord in reader. some more fixes and doco.


Revision 4007 - Directory Listing
Modified Tue Oct 2 02:12:01 2012 UTC (5 years ago) by caltinay
Doco updates.
Data source paddings now take x,y not xy,z as Z padding can be done by setting
vertical extents.


Revision 4005 - Directory Listing
Modified Fri Sep 28 06:09:03 2012 UTC (5 years ago) by caltinay
test fixes, doco updates, annoyance removals.


Revision 4003 - Directory Listing
Modified Fri Sep 28 00:20:01 2012 UTC (5 years ago) by jfenwick
Load balancing on unit tests

Revision 4000 - Directory Listing
Modified Thu Sep 27 01:32:07 2012 UTC (5 years ago) by caltinay
s/escript/escore/


Revision 3997 - Directory Listing
Modified Thu Sep 27 01:09:12 2012 UTC (5 years ago) by caltinay
Add note to documentation that saveDataCSV will not work in all cases.


Revision 3996 - Directory Listing
Modified Thu Sep 27 00:54:10 2012 UTC (5 years ago) by caltinay
Don't test saveCSV for cases it does not work with.


Revision 3995 - Directory Listing
Modified Wed Sep 26 12:43:17 2012 UTC (5 years ago) by jfenwick
More module fiddles

Revision 3994 - Directory Listing
Modified Wed Sep 26 07:38:38 2012 UTC (5 years ago) by jfenwick
Install doco still needs work.
Removing some of the weird:
     esys.finley.finley
type modules

Revision 3993 - Directory Listing
Modified Wed Sep 26 07:00:55 2012 UTC (5 years ago) by caltinay
Addressing mantis 651. Test for finley will fail under MPI since there is
sth wrong with the way ReducedContinuousFunction samples are interrogated.


Revision 3992 - Directory Listing
Modified Wed Sep 26 02:50:48 2012 UTC (5 years ago) by caltinay
Data.cpp: Removed some namespace ambiguities which fixes doxygen warnings, some
cleanup and reindent.
*: doxygen fixes.


Revision 3991 - Directory Listing
Modified Tue Sep 25 23:52:22 2012 UTC (5 years ago) by caltinay
Updated doxygen cfg file and made a few first changes to doco.


Revision 3990 - Directory Listing
Modified Tue Sep 25 05:03:20 2012 UTC (5 years ago) by caltinay
First set of assorted epydoc fixes/additions.


Revision 3982 - Directory Listing
Modified Fri Sep 21 03:23:22 2012 UTC (5 years ago) by jfenwick
More edits + removing pyvisi from trunk


Revision 3981 - Directory Listing
Modified Fri Sep 21 02:47:54 2012 UTC (5 years ago) by jfenwick
First pass of updating copyright notices

Revision 3979 - Directory Listing
Modified Thu Sep 20 06:18:49 2012 UTC (5 years ago) by caltinay
Fixed tests under MPI.


Revision 3978 - Directory Listing
Modified Thu Sep 20 04:36:17 2012 UTC (5 years ago) by caltinay
Make sympy optional as it was intended initially. Trying to instantiate anything
from symbolic will raise an exception if sympy is not available.


Revision 3976 - Directory Listing
Modified Thu Sep 20 03:26:47 2012 UTC (5 years ago) by caltinay
fixed python-2.7'ism.


Revision 3975 - Directory Listing
Modified Thu Sep 20 01:54:06 2012 UTC (5 years ago) by caltinay
Merged symbolic branch into trunk. Curious what daniel and spartacus have to
say...


Revision 3962 - Directory Listing
Modified Tue Sep 11 09:12:07 2012 UTC (5 years, 1 month ago) by jfenwick
Fix in brick for ambiguous typing.

Python work around for unit tests.
Passing cpp tests as well.

omp is disabled due to a weird linking error.


Revision 3961 - Directory Listing
Modified Tue Sep 11 07:21:41 2012 UTC (5 years, 1 month ago) by jfenwick
Options file for mole.
Work around for python compile errors


Revision 3940 - Directory Listing
Modified Thu Jul 26 05:54:58 2012 UTC (5 years, 2 months ago) by jfenwick
Disabling tests which do not allow MPI
Previously we allowed these if there was only one rank


Revision 3931 - Directory Listing
Modified Tue Jul 10 00:39:09 2012 UTC (5 years, 3 months ago) by jfenwick
Fixing spelling


Revision 3928 - Directory Listing
Modified Mon Jul 9 23:23:43 2012 UTC (5 years, 3 months ago) by jfenwick
Do not allow attempts to setValue using a Locator which does not match the funcionSpace of the Data


Revision 3927 - Directory Listing
Modified Mon Jul 9 11:11:47 2012 UTC (5 years, 3 months ago) by jfenwick
Avoid warning


Revision 3923 - Directory Listing
Modified Mon Jul 9 05:12:12 2012 UTC (5 years, 3 months ago) by jfenwick
Fixing build error.


Revision 3922 - Directory Listing
Modified Mon Jul 9 02:19:51 2012 UTC (5 years, 3 months ago) by jfenwick
Adds setvalue to locator
Addresses mantis #531


Revision 3919 - Directory Listing
Modified Thu Jul 5 03:12:02 2012 UTC (5 years, 3 months ago) by jfenwick
Don't know what caused this to show as an error.
Compiler update perhaps?




Revision 3918 - Directory Listing
Modified Thu Jul 5 02:44:07 2012 UTC (5 years, 3 months ago) by jfenwick
Added unit test which uses the TestDomain to check reduction.
TestDomains can no longer be created directly from python 
(fixes problem I had earlier)

TestDomain can now create testdomains with aribtrarily sized 
coordinate vectors.


Revision 3917 - Directory Listing
Modified Thu Jul 5 00:17:50 2012 UTC (5 years, 3 months ago) by jfenwick
Fixing a bug in lazy reduction operations.
Will add extra test to prevent regression once I can find out why the test is crashing


Revision 3916 - Directory Listing
Modified Wed Jul 4 06:16:52 2012 UTC (5 years, 3 months ago) by jfenwick
Deal correctly with scalars passed into inplace update operators.
Fixes mantis 669

Revision 3911 - Directory Listing
Modified Thu Jun 14 01:01:03 2012 UTC (5 years, 4 months ago) by jfenwick
Copyright changes

Revision 3910 - Directory Listing
Modified Thu Jun 14 00:45:03 2012 UTC (5 years, 4 months ago) by gross
Small bug fixed.

Revision 3909 - Directory Listing
Modified Wed Jun 13 07:03:06 2012 UTC (5 years, 4 months ago) by gross
darcy solver removes hydrostatic pressure from problem now

Revision 3906 - Directory Listing
Modified Thu Jun 7 11:00:50 2012 UTC (5 years, 4 months ago) by jfenwick
Disable AMG on MPI builds


Revision 3905 - Directory Listing
Modified Tue Jun 5 08:33:41 2012 UTC (5 years, 4 months ago) by gross
length scale changed

Revision 3892 - Directory Listing
Modified Tue Apr 10 08:57:23 2012 UTC (5 years, 6 months ago) by jfenwick
Merged changes across from the attempt2 branch.
This version builds and passes python2 tests.
It also passes most python3 tests.




Revision 3885 - Directory Listing
Modified Wed Apr 4 22:12:26 2012 UTC (5 years, 6 months ago) by gross
some fix in AMG

Revision 3883 - Directory Listing
Modified Mon Mar 26 03:24:14 2012 UTC (5 years, 6 months ago) by caltinay
Modified dlopenflags in escript's init module so newer MKL libraries can
successfully load support libraries.


Revision 3882 - Directory Listing
Modified Thu Mar 22 02:15:57 2012 UTC (5 years, 6 months ago) by caltinay
Added another constraint for the numpy optimized array access: endianness.
The scipy netcdf reader gave me big endian data which resulted in garbage.
Can use the astype() method in python to convert.


Revision 3852 - Directory Listing
Modified Thu Mar 1 05:34:52 2012 UTC (5 years, 7 months ago) by jfenwick
Correcting some indent errors


Revision 3837 - Directory Listing
Modified Thu Feb 16 03:58:58 2012 UTC (5 years, 8 months ago) by caltinay
Test cleanup.


Revision 3822 - Directory Listing
Modified Mon Feb 13 06:22:06 2012 UTC (5 years, 8 months ago) by gross
Transport solver supports now constraints (except the linear CN)

Revision 3816 - Directory Listing
Modified Thu Feb 9 05:46:36 2012 UTC (5 years, 8 months ago) by caltinay
WrappedArray now honours the 'strides' field in the numpy array interface
and supports more data types. Fixes test failures on savanna which for some
reason did not surface on other machines.


Revision 3807 - Directory Listing
Modified Mon Feb 6 06:14:25 2012 UTC (5 years, 8 months ago) by gross
LINEAR_CRANK_NICOLSON solver added

Revision 3799 - Directory Listing
Modified Thu Feb 2 10:41:28 2012 UTC (5 years, 8 months ago) by gross
test for gradient of constant data added

Revision 3798 - Directory Listing
Modified Thu Feb 2 09:47:27 2012 UTC (5 years, 8 months ago) by gross
test for interpolation of constant data added

Revision 3797 - Directory Listing
Modified Thu Feb 2 09:28:59 2012 UTC (5 years, 8 months ago) by gross
test for integration of constant data added.

Revision 3793 - Directory Listing
Modified Wed Feb 1 07:39:43 2012 UTC (5 years, 8 months ago) by gross
new implementation of FCT solver with some modifications to the python interface

Revision 3792 - Directory Listing
Modified Wed Feb 1 06:16:25 2012 UTC (5 years, 8 months ago) by caltinay
Merged ripley rectangular domain into trunk.


Revision 3788 - Directory Listing
Modified Mon Jan 30 04:41:33 2012 UTC (5 years, 8 months ago) by caltinay
Fixed showEscriptParams() which hasn't worked for 2 years or so.


Revision 3787 - Directory Listing
Modified Fri Jan 27 01:43:47 2012 UTC (5 years, 8 months ago) by caltinay
Changed test cases from y.interpolateTable(...x...) to x.interpolateTable(...y...)


Revision 3786 - Directory Listing
Modified Wed Jan 25 04:46:39 2012 UTC (5 years, 8 months ago) by jfenwick
Made 2D interpolation call consistant with 1D and 3D.
Doco updates later


Revision 3784 - Directory Listing
Modified Wed Jan 25 01:31:42 2012 UTC (5 years, 8 months ago) by caltinay
Implemented optimized copy from numpy in WrappedArray (#652).


Revision 3771 - Directory Listing
Modified Wed Jan 18 02:30:48 2012 UTC (5 years, 9 months ago) by jfenwick
First stage of 2.6/3 conversion


Revision 3738 - Directory Listing
Modified Tue Dec 13 00:37:55 2011 UTC (5 years, 10 months ago) by caltinay
Windoze: Fixed warning and linker error
Don't look for non-existing pasowrap tests.


Revision 3737 - Directory Listing
Modified Tue Dec 13 00:04:39 2011 UTC (5 years, 10 months ago) by caltinay
Reordered and removed superfluous libraries from link lines. Hope W32 likes
that.


Revision 3723 - Directory Listing
Modified Wed Dec 7 05:59:04 2011 UTC (5 years, 10 months ago) by caltinay
Don't eat exceptions when using MPI with one rank.


Revision 3720 - Directory Listing
Modified Wed Dec 7 04:32:21 2011 UTC (5 years, 10 months ago) by caltinay
Fixed off-by-one error in FunctionSpace


Revision 3678 - Directory Listing
Modified Thu Nov 17 06:32:05 2011 UTC (5 years, 11 months ago) by jfenwick
Reversing other changes which made it in somehow


Revision 3676 - Directory Listing
Modified Thu Nov 17 03:52:25 2011 UTC (5 years, 11 months ago) by jfenwick
Removed some debug text
Corrected some dudley where they should not have been.
Set savanna to build shared for now


Revision 3675 - Directory Listing
Modified Thu Nov 17 00:53:38 2011 UTC (5 years, 11 months ago) by jfenwick
pasowrap joins the trunk.


Revision 3648 - Directory Listing
Modified Thu Nov 3 08:13:31 2011 UTC (5 years, 11 months ago) by gross
typos fixed

Revision 3630 - Directory Listing
Modified Wed Oct 19 03:04:53 2011 UTC (6 years ago) by gross
minor fix to dary flux

Revision 3628 - Directory Listing
Modified Wed Oct 19 02:09:36 2011 UTC (6 years ago) by caltinay
Prepend our libraries instead of appending. This should fix HYPRE link
issue on epic.


Revision 3620 - Directory Listing
Modified Wed Oct 5 06:06:14 2011 UTC (6 years ago) by gross
bug fixed

Revision 3619 - Directory Listing
Modified Wed Oct 5 03:53:34 2011 UTC (6 years ago) by gross
some rescaling of permeability in the darcy solver added

Revision 3603 - Directory Listing
Modified Mon Sep 19 03:42:53 2011 UTC (6 years, 1 month ago) by caltinay
Fixed some unused var errors in non-mpi build.


Revision 3597 - Directory Listing
Modified Thu Sep 15 06:03:17 2011 UTC (6 years, 1 month ago) by caltinay
Switching to external cppunit:
-removed tools/CppUnitTest
-updated scons script and files
-updated tests to changed API
-updated readme

Bumped scons options file version to 201. Additions:
-cppunit*
-boomeramg*
-vsl_random



Revision 3585 - Directory Listing
Modified Wed Sep 7 06:16:08 2011 UTC (6 years, 1 month ago) by caltinay
Fix for #582: Determine if gmsh was compiled with MPI support and use
MPI_Comm_spawn to invoke it if necessary.


Revision 3584 - Directory Listing
Modified Tue Sep 6 11:08:34 2011 UTC (6 years, 1 month ago) by jfenwick
Removing Locator.setValue for now


Revision 3582 - Directory Listing
Modified Tue Sep 6 02:02:17 2011 UTC (6 years, 1 month ago) by gross
some clarification of the documentation on the Stokes solver.

Revision 3579 - Directory Listing
Modified Mon Sep 5 23:25:01 2011 UTC (6 years, 1 month ago) by jfenwick
Stopping unit test from failing until I can get it working


Revision 3578 - Directory Listing
Modified Mon Sep 5 23:18:45 2011 UTC (6 years, 1 month ago) by gross
Missing dependence added (?) and typo in test files fixed.

Revision 3577 - Directory Listing
Modified Mon Sep 5 08:22:52 2011 UTC (6 years, 1 month ago) by gross
getFLux fixed and tests added.


Revision 3575 - Directory Listing
Modified Fri Sep 2 08:31:08 2011 UTC (6 years, 1 month ago) by jfenwick
Fixing bug I introduced with the last commit


Revision 3574 - Directory Listing
Modified Fri Sep 2 07:19:31 2011 UTC (6 years, 1 month ago) by jfenwick
Added setValue to locator.
Some unit tests added but they aren't being triggered for some reason


Revision 3573 - Directory Listing
Modified Fri Sep 2 05:51:02 2011 UTC (6 years, 1 month ago) by jfenwick
Added more comprehensible doco about 3D interpolation.
Also fixed a bug but this may break code which previously used 3D interpolation.

This fixes mantis #581


Revision 3569 - Directory Listing
Modified Thu Sep 1 02:42:36 2011 UTC (6 years, 1 month ago) by gross
Darcy flow solver and docu reviewed. Coupled solvers have been removed.


Revision 3566 - Directory Listing
Modified Tue Aug 30 07:37:55 2011 UTC (6 years, 1 month ago) by gross
small fix to units

Revision 3565 - Directory Listing
Modified Mon Aug 29 10:28:57 2011 UTC (6 years, 1 month ago) by jfenwick
surely it will accept this one


Revision 3564 - Directory Listing
Modified Mon Aug 29 09:09:30 2011 UTC (6 years, 1 month ago) by jfenwick
In case windows is case sensitive


Revision 3552 - Directory Listing
Modified Mon Aug 22 00:05:17 2011 UTC (6 years, 1 month ago) by jfenwick
Fixed icc problem


Revision 3551 - Directory Listing
Modified Fri Aug 19 03:53:41 2011 UTC (6 years, 2 months ago) by jfenwick
Changing unit test calls to use non deprecated forms (python2.7)
fixes bug #568


Revision 3550 - Directory Listing
Modified Fri Aug 19 01:51:35 2011 UTC (6 years, 2 months ago) by jfenwick
Switching from rand() to boost::random for non-VSL randoms


Revision 3549 - Directory Listing
Modified Tue Aug 9 06:40:06 2011 UTC (6 years, 2 months ago) by jfenwick
Fix for issue #617
A couple of extra tests to make sure it doesn't happen again


Revision 3544 - Directory Listing
Modified Wed Jul 27 06:19:10 2011 UTC (6 years, 2 months ago) by jfenwick
Temporary fix to get windows to compile


Revision 3522 - Directory Listing
Modified Tue May 24 00:57:58 2011 UTC (6 years, 4 months ago) by gross
(almost) full support for Point elements

Revision 3515 - Directory Listing
Modified Thu May 19 08:20:57 2011 UTC (6 years, 5 months ago) by gross
some first work for DiracFunctions

Revision 3514 - Directory Listing
Modified Thu May 19 04:48:34 2011 UTC (6 years, 5 months ago) by caltinay
Fixed __truediv__ and added __rtruediv__ for new python division operator.


Revision 3510 - Directory Listing
Modified Fri May 13 06:09:49 2011 UTC (6 years, 5 months ago) by gross
some fixes for the compilation without BOOMERAMG

Revision 3508 - Directory Listing
Modified Fri May 13 04:15:29 2011 UTC (6 years, 5 months ago) by lgao
Add Boomer AMG as a new preconditioner 
Can be used by .setPreconditioner(SolverOptions.BOOMERAMG)
and the following parallel coarsening method can be 
used together with Boomer AMG preconditioner: 
  .setCoarsening(SolverOptions.CIJP_FIXED_RANDOM_COARSENING)
  .setCoarsening(SolverOptions.CIJP_COARSENING)
  .setCoarsening(SolverOptions.FALGOUT_COARSENING)
  .setCoarsening(SolverOptions.PMIS_COARSENING)
  .setCoarsening(SolverOptions.HMIS_COARSENING)

Note that Boomer AMG is only available when MPI is enabled.  



Revision 3506 - Directory Listing
Modified Wed May 11 01:59:45 2011 UTC (6 years, 5 months ago) by jfenwick
Use VSL if MKLRANDOM is defined.
Use different seeds for different ranks/threads.
Use different seeds for successive calls with no seed given.


Revision 3505 - Directory Listing
Modified Fri Apr 29 07:09:45 2011 UTC (6 years, 5 months ago) by jfenwick
arithmetic operations now return NotImplemented if they don't know what to do.
Fixes mantis issue #54


Revision 3504 - Directory Listing
Modified Thu Apr 28 12:55:05 2011 UTC (6 years, 5 months ago) by jfenwick
Move arithmetic ops into explicitly named methods

Revision 3502 - Directory Listing
Modified Thu Apr 28 05:06:24 2011 UTC (6 years, 5 months ago) by gross
Darcy flow solver is now supporting 4 solvers

Revision 3501 - Directory Listing
Modified Wed Apr 13 04:07:53 2011 UTC (6 years, 6 months ago) by gross


Revision 3500 - Directory Listing
Modified Mon Apr 11 03:09:06 2011 UTC (6 years, 6 months ago) by gross
GMRES solver for new DarcyFlux solver added

Revision 3499 - Directory Listing
Modified Fri Apr 8 00:14:35 2011 UTC (6 years, 6 months ago) by gross


Revision 3494 - Directory Listing
Modified Tue Apr 5 04:12:08 2011 UTC (6 years, 6 months ago) by gross
more coal seam gas

Revision 3490 - Directory Listing
Modified Wed Mar 30 02:24:33 2011 UTC (6 years, 6 months ago) by caltinay
More gcc-4.6 fixes (mostly initialized-but-unused-var warnings)


Revision 3486 - Directory Listing
Modified Sun Mar 27 22:27:45 2011 UTC (6 years, 6 months ago) by gross
bug in eigenvector calculation fixed (see mantis=594)

Revision 3485 - Directory Listing
Modified Thu Mar 24 22:44:40 2011 UTC (6 years, 6 months ago) by gross
some compile fixes

Revision 3475 - Directory Listing
Modified Thu Mar 17 00:28:08 2011 UTC (6 years, 7 months ago) by caltinay
Removed an obsolete file.


Revision 3470 - Directory Listing
Modified Mon Mar 14 03:50:49 2011 UTC (6 years, 7 months ago) by caltinay
Fix for mantis issue 591 (added __truediv__ methods to Data class).



Revision 3468 - Directory Listing
Modified Tue Feb 22 06:38:57 2011 UTC (6 years, 7 months ago) by jfenwick
Made constructors more efficient.
Only has a very minor affect on performance

Revision 3462 - Directory Listing
Modified Mon Feb 7 02:01:50 2011 UTC (6 years, 8 months ago) by caltinay
Removed debug output.


Revision 3454 - Directory Listing
Modified Tue Jan 25 04:00:29 2011 UTC (6 years, 8 months ago) by caltinay
Fixed some minor doxygen issues.


Revision 3452 - Directory Listing
Modified Tue Jan 25 01:53:57 2011 UTC (6 years, 8 months ago) by caltinay
Fixed building cookbook, including toc (scons scans for keywords in the tex
files but not in .cls as it seems).
Also fixed a few epydoc warnings and typos.



Revision 3440 - Directory Listing
Modified Fri Jan 14 00:04:53 2011 UTC (6 years, 9 months ago) by gross
a second AMG interpolation implemented

Revision 3437 - Directory Listing
Modified Mon Jan 10 05:05:15 2011 UTC (6 years, 9 months ago) by plaub
Fixed test for new default arguments


Revision 3436 - Directory Listing
Modified Mon Jan 10 02:06:07 2011 UTC (6 years, 9 months ago) by plaub
Added/modified AMG tests:

  - "self.failUnless(...)" became "self.assertTrue(...)"
    because fail* is soon to be deprecated,
  - fixed logical error in self.assertTrue argument,
  - added another test, 'testSquare'.

Added some print statements to AMG.c in verbose mode to
identify which of the stopping conditions were fulfilled.

Changed default AMG parameters for 'setNumPreSweeps' and 
'setNumPostSweeps' to 1 (huge speed improvment).

P.S Beware of bugs in the above code; I have only proved 
it correct, not tried it... Jokes!



Revision 3435 - Directory Listing
Modified Fri Jan 7 03:40:39 2011 UTC (6 years, 9 months ago) by gross
initial value changed

Revision 3434 - Directory Listing
Modified Fri Jan 7 03:35:58 2011 UTC (6 years, 9 months ago) by gross
initial value changed

Revision 3433 - Directory Listing
Modified Fri Jan 7 02:39:05 2011 UTC (6 years, 9 months ago) by gross
initial value changed

Revision 3432 - Directory Listing
Modified Fri Jan 7 01:32:07 2011 UTC (6 years, 9 months ago) by jfenwick
Made import statements a bit more specific to clean up the epydoc

Revision 3431 - Directory Listing
Modified Fri Jan 7 01:19:21 2011 UTC (6 years, 9 months ago) by gross
redundant setMinCoarseMatrixSparsity removed.

Revision 3402 - Directory Listing
Modified Tue Dec 7 07:36:12 2010 UTC (6 years, 10 months ago) by gross
AMG support now block size > 3 (requires clapack or MKL).

additional diagnostics for AMG 



Revision 3390 - Directory Listing
Modified Thu Dec 2 00:34:37 2010 UTC (6 years, 10 months ago) by jfenwick
RandomData added


Revision 3379 - Directory Listing
Modified Wed Nov 24 04:48:49 2010 UTC (6 years, 10 months ago) by gross
some clarification on lumping

Revision 3378 - Directory Listing
Modified Tue Nov 23 05:09:25 2010 UTC (6 years, 10 months ago) by caltinay
Pass dictionary of data objects to EscriptDataset as kwargs in DataManager.


Revision 3375 - Directory Listing
Modified Tue Nov 23 00:37:23 2010 UTC (6 years, 10 months ago) by jfenwick
Fix to unit tests


Revision 3369 - Directory Listing
Modified Fri Nov 19 06:26:11 2010 UTC (6 years, 10 months ago) by gross
matrix balance introduced in paso

Revision 3368 - Directory Listing
Modified Fri Nov 19 05:59:46 2010 UTC (6 years, 10 months ago) by jfenwick
3d interpolateTable support.
New more generic interface for table interpolation.
tests and doco updated

Revision 3360 - Directory Listing
Modified Thu Nov 18 00:20:21 2010 UTC (6 years, 11 months ago) by jfenwick
Fix some epydoc errors
Fixed issue 564
removed minimize.py since it hasn't worked in who knows how long

Revision 3358 - Directory Listing
Modified Wed Nov 17 08:02:32 2010 UTC (6 years, 11 months ago) by gross
a more flexiblae version of safeDiv

Revision 3352 - Directory Listing
Modified Tue Nov 16 03:58:09 2010 UTC (6 years, 11 months ago) by gross
exposure of AMG options

Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (6 years, 11 months ago) by caltinay
escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.


Revision 3344 - Directory Listing
Modified Thu Nov 11 23:26:52 2010 UTC (6 years, 11 months ago) by caltinay
Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK



Revision 3317 - Directory Listing
Modified Thu Oct 28 00:50:41 2010 UTC (6 years, 11 months ago) by caltinay
Removed bogus mpi.h includes, replaced others by our esysUtils wrapper
and rearranged so that the wrapper always comes before netcdf which fixes
linking problems when disabling mpi on systems with netCDF 4.x.


Revision 3313 - Directory Listing
Modified Tue Oct 26 22:00:09 2010 UTC (6 years, 11 months ago) by gross
some print statements removed

Revision 3283 - Directory Listing
Modified Mon Oct 18 22:39:28 2010 UTC (7 years ago) by gross
AMG reengineered, BUG is Smoother fixed.



Revision 3269 - Directory Listing
Modified Wed Oct 13 03:21:50 2010 UTC (7 years ago) by jfenwick
Fixed some intel compiler warnings.
Put linearPDEs back the way it was and present a common interface for dudley and finley (as per Lutz)


Revision 3267 - Directory Listing
Modified Wed Oct 13 02:12:06 2010 UTC (7 years ago) by caltinay
Renamed restarts.py to datamanager.py, added a method to explicitly set the
domain without adding data. Calling export() without domain/data will now
output a warning. Some additional cleanup.


Revision 3260 - Directory Listing
Modified Mon Oct 11 03:41:35 2010 UTC (7 years ago) by jfenwick
Removing dead files


Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (7 years ago) by jfenwick
Merging dudley and scons updates from branches


Revision 3201 - Directory Listing
Modified Thu Sep 23 06:54:18 2010 UTC (7 years ago) by gross
bug in meanValue fixed.

Revision 3192 - Directory Listing
Modified Fri Sep 17 04:02:57 2010 UTC (7 years, 1 month ago) by caltinay
- weipa's saveVTK will now save multiple files if the data objects to write are
  not on the same mesh.
- the save* methods now also add the appropriate file extension if not already
  supplied


Revision 3188 - Directory Listing
Modified Thu Sep 16 04:36:38 2010 UTC (7 years, 1 month ago) by caltinay
Fixed deletion of old restart directories with a checkpoint freq>1.


Revision 3186 - Directory Listing
Modified Thu Sep 16 01:23:53 2010 UTC (7 years, 1 month ago) by caltinay
Added checkpoint frequency setting to DataManager so that visualisation files
can be created independent of restart files. Also removed the overhead of
creating an EscriptDataset instance for the restart-only case.



Revision 3160 - Directory Listing
Modified Mon Sep 6 09:17:28 2010 UTC (7 years, 1 month ago) by gross
bug fixed in RILU and test modified.

Revision 3158 - Directory Listing
Modified Mon Sep 6 06:09:11 2010 UTC (7 years, 1 month ago) by gross
GS and Jacobi are now used through the same interface.

Revision 3147 - Directory Listing
Modified Fri Sep 3 02:03:05 2010 UTC (7 years, 1 month ago) by caltinay
Don't clear domain on error. Moved adding Metadata-tags to the C++ level.


Revision 3139 - Directory Listing
Modified Thu Sep 2 06:37:43 2010 UTC (7 years, 1 month ago) by caltinay
Fixed a typo.


Revision 3133 - Directory Listing
Modified Thu Sep 2 02:04:29 2010 UTC (7 years, 1 month ago) by caltinay
Added methods to set mesh labels and units to DataManager.


Revision 3132 - Directory Listing
Modified Thu Sep 2 01:48:31 2010 UTC (7 years, 1 month ago) by caltinay
Removed unused variable.


Revision 3131 - Directory Listing
Modified Thu Sep 2 01:40:47 2010 UTC (7 years, 1 month ago) by caltinay
DataManager now uses Python magic to figure out how to load the domain without
hardcoding anything finley-specific.


Revision 3128 - Directory Listing
Modified Wed Sep 1 03:54:09 2010 UTC (7 years, 1 month ago) by caltinay
-Added mesh axis label/unit and variable unit support to weipa's Silo writer
-Created EscriptDataset python wrapper
-Some code cleanup and a ghost zone fix for the VisIt interface


Revision 3111 - Directory Listing
Modified Thu Aug 26 06:49:42 2010 UTC (7 years, 1 month ago) by gross
some diagnostics for time step backtracing added

Revision 3110 - Directory Listing
Modified Thu Aug 26 05:42:18 2010 UTC (7 years, 1 month ago) by caltinay
Fixed a typo.


Revision 3109 - Directory Listing
Modified Thu Aug 26 04:33:18 2010 UTC (7 years, 1 month ago) by caltinay
Added accessor for the simulation cycle and log which directory was used to
restart.


Revision 3106 - Directory Listing
Modified Wed Aug 25 08:15:38 2010 UTC (7 years, 1 month ago) by caltinay
Fixed export when 'work_dir' is set to sth other than the current dir.


Revision 3103 - Directory Listing
Modified Tue Aug 24 07:01:33 2010 UTC (7 years, 1 month ago) by gross
test fix

Revision 3102 - Directory Listing
Modified Tue Aug 24 06:14:21 2010 UTC (7 years, 1 month ago) by caltinay
Inject the DataManager class to the escript namespace.


Revision 3101 - Directory Listing
Modified Tue Aug 24 06:08:12 2010 UTC (7 years, 1 month ago) by caltinay
weipa's saveVTK now stores metadata schema & string as expected.


Revision 3100 - Directory Listing
Modified Mon Aug 23 09:31:09 2010 UTC (7 years, 1 month ago) by gross
bug in ILU0 fixed.

Revision 3096 - Directory Listing
Modified Thu Aug 19 01:40:52 2010 UTC (7 years, 2 months ago) by caltinay
-New VisIt simulation control interface in weipa (uses VisIt's simv2)
-Rewrote restarts.py to be a more generic data manager for restarts and exports
-Removed weipa python file since the functionality is now handled by restarts.py


Revision 3094 - Directory Listing
Modified Fri Aug 13 08:38:06 2010 UTC (7 years, 2 months ago) by gross
The MPI and sequational GAUSS_SEIDEL have been merged.
The couring and main diagonal pointer is now manged by the patternm which means that they are calculated once only even if the preconditioner is deleted.




Revision 3084 - Directory Listing
Modified Wed Aug 4 03:26:50 2010 UTC (7 years, 2 months ago) by gross
small bug fixed.

Revision 3081 - Directory Listing
Modified Tue Aug 3 05:36:42 2010 UTC (7 years, 2 months ago) by gross
a light restart manager added.

Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (7 years, 2 months ago) by jfenwick
Switched the build_dir keyword param to variant_dir.
Should fix issue 525.



Revision 3074 - Directory Listing
Modified Tue Jul 27 01:47:45 2010 UTC (7 years, 2 months ago) by gross
tolerance for PCG relaxed.

Revision 3071 - Directory Listing
Modified Wed Jul 21 05:37:30 2010 UTC (7 years, 2 months ago) by gross
new darcy flux

Revision 3059 - Directory Listing
Modified Tue Jul 6 03:31:48 2010 UTC (7 years, 3 months ago) by jfenwick
Fix error message in launcher. Allow non-data objects to be passed to condEval

Revision 3051 - Directory Listing
Modified Tue Jun 29 00:45:49 2010 UTC (7 years, 3 months ago) by lgao
Hybrid MPI/OpenMP versioned Gauss_Seidel preconditioner is added. 
To use it, use "SolverOptions.GAUSS_SEIDEL_MPI" in python script. 



Revision 3035 - Directory Listing
Modified Thu Jun 10 01:48:41 2010 UTC (7 years, 4 months ago) by jfenwick
Lazy node support for conditional evaluation.
It should be a complete operation now.


Revision 3034 - Directory Listing
Modified Wed Jun 9 03:24:23 2010 UTC (7 years, 4 months ago) by jfenwick
Adding unit tests for condEval


Revision 3032 - Directory Listing
Modified Mon May 31 02:58:15 2010 UTC (7 years, 4 months ago) by jfenwick
Add work around for windows not liking chained X::Y::Z.
TestDomain now supports tags and getX.
This is to allow testing for some features without invoking finley


Revision 3031 - Directory Listing
Modified Thu May 27 04:04:33 2010 UTC (7 years, 4 months ago) by jfenwick
Adding condEval function to Data.
Unit tests and a different name to follow.

Revision 3018 - Directory Listing
Modified Thu Apr 29 21:35:24 2010 UTC (7 years, 5 months ago) by gross
some stupid lines removed

Revision 2996 - Directory Listing
Modified Tue Mar 23 06:24:09 2010 UTC (7 years, 6 months ago) by artak
Tests are added for GAUSS_SEIDEL

Revision 2995 - Directory Listing
Modified Tue Mar 23 06:14:26 2010 UTC (7 years, 6 months ago) by artak
AMG levels maximum set 5

Revision 2994 - Directory Listing
Modified Tue Mar 23 06:13:14 2010 UTC (7 years, 6 months ago) by artak
AMG levels maximum set 5

Revision 2988 - Directory Listing
Modified Tue Mar 16 06:14:30 2010 UTC (7 years, 7 months ago) by gross
C-level lumping switched on

Revision 2987 - Directory Listing
Modified Tue Mar 16 01:32:43 2010 UTC (7 years, 7 months ago) by gross
FCT solver rewritten

Revision 2962 - Directory Listing
Modified Wed Mar 3 01:03:56 2010 UTC (7 years, 7 months ago) by gross
bar as unit added

Revision 2960 - Directory Listing
Modified Tue Mar 2 07:54:11 2010 UTC (7 years, 7 months ago) by gross
new DarcyFlux solver

Revision 2954 - Directory Listing
Modified Fri Feb 26 06:09:47 2010 UTC (7 years, 7 months ago) by gross
bug introduced by a smart programmer to the Locator has been fixed?


Revision 2948 - Directory Listing
Modified Thu Feb 25 04:54:30 2010 UTC (7 years, 7 months ago) by gross
a new almost completed version of the cookbook

Revision 2941 - Directory Listing
Modified Mon Feb 22 05:17:43 2010 UTC (7 years, 7 months ago) by caltinay
saveESD now doesn't store the absolute path to the files in the ESD file so
the whole dataset can be moved easily.


Revision 2940 - Directory Listing
Modified Fri Feb 19 00:38:45 2010 UTC (7 years, 7 months ago) by caltinay
Minor potential optimization: prefer empty() over size()==0.


Revision 2938 - Directory Listing
Modified Thu Feb 18 00:24:35 2010 UTC (7 years, 8 months ago) by caltinay
saveESD: Add a warning about the experimental status of ESD.
Save the ESD file within the data directory.


Revision 2926 - Directory Listing
Modified Thu Feb 4 23:13:53 2010 UTC (7 years, 8 months ago) by jfenwick
Attempting to fix a problem with windows linking in the ironically named INKNOWWHATIMDOING section


Revision 2923 - Directory Listing
Modified Thu Feb 4 04:05:36 2010 UTC (7 years, 8 months ago) by jfenwick
Bringing non-release specific things from stage3.1 r2922 back to trunk


Revision 2912 - Directory Listing
Modified Wed Feb 3 03:31:24 2010 UTC (7 years, 8 months ago) by gross
some missing functions

Revision 2905 - Directory Listing
Modified Tue Feb 2 04:26:42 2010 UTC (7 years, 8 months ago) by gross
some missing files.

Revision 2891 - Directory Listing
Modified Fri Jan 29 00:26:07 2010 UTC (7 years, 8 months ago) by caltinay
Fix for ambiguous call to sqrt...


Revision 2884 - Directory Listing
Modified Thu Jan 28 05:00:59 2010 UTC (7 years, 8 months ago) by jfenwick
Updated various nan checks to consider the windows _isnan

The default compiler flags have changed as well.
+ intel will now take -std=c99 instead of -ansi
+ gcc has -ansi removed which means it defaults to gnu99

We could have set gcc to -std=c99 as well but that gives a 
warning on g++ which gets converted into an error by our
pedantic warning.

Rationale:
We need something more than ansi to get proper nan handling.
- We currently don't have any code which does not comply with ansi
  but the nan checks don't work.

Impact:
If we want our code to still be able to compile on older compilers
(at reduced functionality) we need to be careful not to introduce other
c99-isms.
If we don't care, then it's time for some celebratory // comments.



Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (7 years, 8 months ago) by jfenwick
Don't panic.
Updating copyright stamps


Revision 2867 - Directory Listing
Modified Fri Jan 22 06:28:02 2010 UTC (7 years, 8 months ago) by gross
now option -i is used if no script is given

Revision 2863 - Directory Listing
Modified Thu Jan 21 07:18:37 2010 UTC (7 years, 8 months ago) by gross
fix for mantis 454

Revision 2862 - Directory Listing
Modified Thu Jan 21 04:45:39 2010 UTC (7 years, 8 months ago) by gross
more review in the cookbook

Revision 2860 - Directory Listing
Modified Tue Jan 19 05:25:39 2010 UTC (7 years, 8 months ago) by gross
prints removed.

Revision 2858 - Directory Listing
Modified Tue Jan 19 01:07:52 2010 UTC (7 years, 8 months ago) by gross
small fixes with the reduced solution for the transport problem

Revision 2857 - Directory Listing
Modified Mon Jan 18 07:44:42 2010 UTC (7 years, 9 months ago) by gross
test for ApproximationOrder added and Transport type problem now choose reduced when necessary only.

Revision 2856 - Directory Listing
Modified Mon Jan 18 04:14:37 2010 UTC (7 years, 9 months ago) by gross
FunctionSpaces provide now some information about their approximation order.

Revision 2855 - Directory Listing
Modified Mon Jan 18 03:39:29 2010 UTC (7 years, 9 months ago) by jfenwick
Fixed


Revision 2852 - Directory Listing
Modified Mon Jan 18 00:22:23 2010 UTC (7 years, 9 months ago) by jfenwick
Fix MPI issue in toString.
Fixes unit tet failure in myfistrscript.py


Revision 2850 - Directory Listing
Modified Fri Jan 15 07:14:25 2010 UTC (7 years, 9 months ago) by gross
the powerlaw is working again. tests are switched on again.

Revision 2843 - Directory Listing
Modified Thu Jan 14 05:51:28 2010 UTC (7 years, 9 months ago) by gross
new compressible solver

Revision 2841 - Directory Listing
Modified Thu Jan 14 01:02:56 2010 UTC (7 years, 9 months ago) by jfenwick
Unit tests for 2838 and adding setTags variant which takes a string instead of a tag num.



Revision 2838 - Directory Listing
Modified Wed Jan 13 06:01:03 2010 UTC (7 years, 9 months ago) by jfenwick
Vector, Tensor, Tensor3, Tensor4 can now take a (nested) sequence for 
their initial value.



Revision 2835 - Directory Listing
Modified Mon Jan 11 01:23:52 2010 UTC (7 years, 9 months ago) by artak
Default smoother set to Gauss-Seidel. This one more robust than jacobi, but jacobi is faster.

Revision 2828 - Directory Listing
Modified Tue Dec 22 01:24:40 2009 UTC (7 years, 9 months ago) by artak
Smoother for AMG now can be selected from python. Now only Jacobi and Gauss-Seidel are available as smoothers.

Revision 2827 - Directory Listing
Modified Fri Dec 18 03:41:09 2009 UTC (7 years, 10 months ago) by jfenwick
There is now a mechanism to pass a C function into escript and invoke it on each datapoint with:

applyBinaryCFunction

Warning in order to use this function your escript must be compiled with 
scons ...  iknowwhatimdoing=yes

---------------------
Because this code relies on casts that the C standard does not allow some code has been moved into Dodgy{.h .cpp}

Scons files have been modified to treat these files specially [Warnings are not errors for these files.]

Revision 2825 - Directory Listing
Modified Thu Dec 17 00:10:06 2009 UTC (7 years, 10 months ago) by jfenwick
More fixes to resolveGroup


Revision 2824 - Directory Listing
Modified Wed Dec 16 01:22:56 2009 UTC (7 years, 10 months ago) by jfenwick
ResolveGroup fixed so it actually resolves groups.
Children, when you iterate backwards remember its i>=0 not i>0


Revision 2817 - Directory Listing
Modified Thu Dec 10 02:12:33 2009 UTC (7 years, 10 months ago) by artak
test is added for selecting standard coarsening.

Revision 2816 - Directory Listing
Modified Thu Dec 10 02:09:43 2009 UTC (7 years, 10 months ago) by artak
Standard coarsening is added to options list.

Revision 2809 - Directory Listing
Modified Mon Dec 7 03:39:37 2009 UTC (7 years, 10 months ago) by jfenwick
TestDomain now divides the total number of samples between ranks rather 
than putting all samples on all ranks.


Revision 2799 - Directory Listing
Modified Thu Dec 3 01:35:08 2009 UTC (7 years, 10 months ago) by jfenwick
resolveGroup function added to python.
Unit tests for resolveGroup, resolve and delay.

Revision 2795 - Directory Listing
Modified Wed Dec 2 02:39:23 2009 UTC (7 years, 10 months ago) by jfenwick
Removed node limit on lazy expressions.
The parameter LAZY_STR_FMT {0,1,2}  controls how lazy expressions are printed.
0 gives default output
1 gives a tree form.
2 just prints depth

Revision 2793 - Directory Listing
Modified Tue Dec 1 06:10:10 2009 UTC (7 years, 10 months ago) by gross
some new util functions

Revision 2792 - Directory Listing
Modified Tue Dec 1 05:02:18 2009 UTC (7 years, 10 months ago) by jfenwick
Oops.
matrixInverse now checks MPI to see if any other ranks raised exceptions.

Revision 2791 - Directory Listing
Modified Tue Dec 1 03:36:36 2009 UTC (7 years, 10 months ago) by jfenwick
Added expression depth to toString for LazyData.


Revision 2789 - Directory Listing
Modified Fri Nov 27 05:40:25 2009 UTC (7 years, 10 months ago) by caltinay
Removed unused variable from OpenMP block.
Fixes compilation error with gcc 4.3.


Revision 2787 - Directory Listing
Modified Fri Nov 27 05:03:09 2009 UTC (7 years, 10 months ago) by jfenwick
Worked around icc11 problem in table interpolate.
Best guess is that a stackframe was getting mauled somehow.



Revision 2785 - Directory Listing
Modified Thu Nov 26 05:17:40 2009 UTC (7 years, 10 months ago) by lgao
Minor fix for unused variables



Revision 2783 - Directory Listing
Modified Thu Nov 26 05:07:33 2009 UTC (7 years, 10 months ago) by lgao
process C_TensorBinaryOperation at the level of a whole sample rather than 
each datapoint when an Expanded data is operating with a Constant data. This
could improve the efficiency of the non-lazy version escipt. 



Revision 2782 - Directory Listing
Modified Thu Nov 26 04:42:29 2009 UTC (7 years, 10 months ago) by caltinay
Added missing var declaration.


Revision 2779 - Directory Listing
Modified Thu Nov 26 03:51:15 2009 UTC (7 years, 10 months ago) by caltinay
Fixed more instances of garbage=cstring+integer errors (d'oh!)


Revision 2777 - Directory Listing
Modified Thu Nov 26 01:06:00 2009 UTC (7 years, 10 months ago) by jfenwick
Added the LAZY_STACK_PROF #define for Lazy.
If enabled lazy will print the (roughly) maximum stack used by any openmp 
thread over the course of this session.


Revision 2774 - Directory Listing
Modified Wed Nov 25 04:24:03 2009 UTC (7 years, 10 months ago) by artak
#ifndef changed to #ifdef in makeNaN

Revision 2773 - Directory Listing
Modified Wed Nov 25 04:02:01 2009 UTC (7 years, 10 months ago) by jfenwick
Hadn't realised isnan was a macro.
Checking for it rather than FP_NAN


Revision 2771 - Directory Listing
Modified Wed Nov 25 01:38:49 2009 UTC (7 years, 10 months ago) by jfenwick
Fix


Revision 2770 - Directory Listing
Modified Wed Nov 25 01:24:51 2009 UTC (7 years, 10 months ago) by jfenwick
Removed buffer implementation of Lazy.
Removed supporting Alloc/Free Sample buffer calls.

Revision 2769 - Directory Listing
Modified Tue Nov 24 00:36:22 2009 UTC (7 years, 10 months ago) by jfenwick
Unit tests for NaN handling

Revision 2768 - Directory Listing
Modified Mon Nov 23 23:56:14 2009 UTC (7 years, 10 months ago) by jfenwick
Dodge problem in NoPDE class


Revision 2766 - Directory Listing
Modified Mon Nov 23 05:10:53 2009 UTC (7 years, 10 months ago) by jfenwick
inf, sup and Lsup now correctly handle +-infinity.
They also will return NaN if any part of their input is NaN.

This will break unit tests since it exposes the hidden bug (#447 in mantis)

This code relies on the ability to test for NaNs.
To do this it makes use of macros and functions from C99.
If you do not have a C99 compiler, then you will probably get the old behaviour.
That is, you won't know when you have NaNs.


Also did minor tweak to saveDataCSV doco.

Revision 2763 - Directory Listing
Modified Thu Nov 19 06:28:03 2009 UTC (7 years, 10 months ago) by lgao
Minor fix to my previous commit.




Revision 2762 - Directory Listing
Modified Thu Nov 19 06:24:44 2009 UTC (7 years, 10 months ago) by lgao
fix the compilation problem I introduced for Non-MPI build due
to my last commit for Data::toString().



Revision 2760 - Directory Listing
Modified Thu Nov 19 05:22:45 2009 UTC (7 years, 10 months ago) by artak
The first version of the new AMG preconditioner. It need a lot of polishing for efficiency. Old AMG now called AMLI preconditioner.

Revision 2757 - Directory Listing
Modified Thu Nov 19 01:04:57 2009 UTC (7 years, 11 months ago) by lgao
Solve the print statement problem for MPI program (matis issue 465). 



Revision 2753 - Directory Listing
Modified Wed Nov 18 06:06:50 2009 UTC (7 years, 11 months ago) by lgao
fix bugs in minGlobalDataPoint() and maxGlobalDataPoint()



Revision 2748 - Directory Listing
Modified Tue Nov 17 07:32:59 2009 UTC (7 years, 11 months ago) by gross
Macro elements are implemented now. VTK writer for macro elements still needs testing.

Revision 2747 - Directory Listing
Modified Tue Nov 17 05:19:59 2009 UTC (7 years, 11 months ago) by lgao
Minor rivision to minGlobalDataPoint()



Revision 2746 - Directory Listing
Modified Tue Nov 17 05:13:51 2009 UTC (7 years, 11 months ago) by lgao
Fix the error in minGlobalDataPoint() and maxGlobalDataPoint() due to 
the fact that the number of samples on one MPI rank could be 0. Therefore,
not every MPI rank has valid min/max data point. 



Revision 2745 - Directory Listing
Modified Tue Nov 17 04:23:02 2009 UTC (7 years, 11 months ago) by jfenwick
Added getInfLocator and getSupLocator to pdetools.
This means if you want to use them, you will need to import them.
These methods return a locator to a point with the smallest/largest value.

Added resolve() and delay() to utils.
Now you can do things like:

d=delay(v)
..
..
z=resolve(d+1)



Revision 2742 - Directory Listing
Modified Thu Nov 12 06:03:37 2009 UTC (7 years, 11 months ago) by jfenwick
Merging changes from the lapack branch.

The inverse() operation has been moved into c++. [No lazy support for this operation yet.]
Optional Lapack support has been added for matrices larger than 3x3. 
service0 is set to use mkl_lapack.




Revision 2738 - Directory Listing
Modified Fri Nov 6 05:33:13 2009 UTC (7 years, 11 months ago) by jfenwick
Taipan and DataVector use size_type (currently long) internally to talk 
about sizes.
[A lot more work needs to be done on this].
Exceptions now give nicer messages and output the problematic numbers.

Some minor doco errors fixed.

escript.util.mkDir
Now checks to see if the pathname already exists as a non-directory.
On suggestion from slanger it now calls makedirs.




Revision 2737 - Directory Listing
Modified Tue Nov 3 00:44:00 2009 UTC (7 years, 11 months ago) by jfenwick
icc will now record compiler options in libraries.
escriptParams now has a pretty printer option for lazy expressions.

Revision 2735 - Directory Listing
Modified Mon Nov 2 02:03:24 2009 UTC (7 years, 11 months ago) by jfenwick
Fixed bug where calling minval() reintroduced laziness after it had been removed.


Revision 2734 - Directory Listing
Modified Fri Oct 30 05:39:48 2009 UTC (7 years, 11 months ago) by jfenwick
Fixed bug in lazy maxval and minval


Revision 2725 - Directory Listing
Modified Wed Oct 21 23:44:06 2009 UTC (7 years, 11 months ago) by artak
AMG unit tests are disabled for 2-nd order elements.

Revision 2724 - Directory Listing
Modified Sun Oct 18 23:50:18 2009 UTC (8 years ago) by jfenwick
And again


Revision 2723 - Directory Listing
Modified Sun Oct 18 23:44:37 2009 UTC (8 years ago) by jfenwick
Use correct types for MPI op parameters


Revision 2721 - Directory Listing
Modified Fri Oct 16 05:40:12 2009 UTC (8 years ago) by jfenwick
minval and maxval are now lazy operations (they weren't before).
Whether or not Lsup, sup and inf resolve their arguments before computing answers is controlled by the escriptParam 'RESOLVE_COLLECTIVE'.
Note: integrate() still forces a resolve.

Added some unit tests for operations which weren't tested before.
Added deepcopy implementations for lazy operations which got missed somehow.

Revision 2719 - Directory Listing
Modified Wed Oct 14 06:38:03 2009 UTC (8 years ago) by gross
a new Stokes solver added

Revision 2716 - Directory Listing
Modified Tue Oct 13 04:58:08 2009 UTC (8 years ago) by jfenwick
Small mod - process C_Tensor??Operation on ExpandedData as a whole 
sample rather than a datapoint at a time.
This is just to bring Non-Lazy into line with Lazy.


Revision 2713 - Directory Listing
Modified Wed Oct 7 00:35:06 2009 UTC (8 years ago) by jfenwick
Fixes for windows.
Copied from Thomas Poulet


Revision 2710 - Directory Listing
Modified Mon Oct 5 23:15:04 2009 UTC (8 years ago) by jfenwick
Change to error output requested by Thomas Poulet


Revision 2693 - Directory Listing
Modified Tue Sep 29 05:47:45 2009 UTC (8 years ago) by artak
sorry python Indentation Error, fixed 

Revision 2692 - Directory Listing
Modified Tue Sep 29 05:35:31 2009 UTC (8 years ago) by artak
minor typo

Revision 2691 - Directory Listing
Modified Tue Sep 29 05:30:27 2009 UTC (8 years ago) by artak
Projector class had getSolverOptions(), but was returning null, so changed to return correct solver options.

Revision 2689 - Directory Listing
Modified Tue Sep 29 05:22:51 2009 UTC (8 years ago) by artak
getSolverOptionsDiv was returning Pressure options instead of Div equation options

Revision 2688 - Directory Listing
Modified Tue Sep 29 05:19:43 2009 UTC (8 years ago) by artak
changes to default threshold values

Revision 2683 - Directory Listing
Modified Tue Sep 29 02:20:22 2009 UTC (8 years ago) by gross
documentation for pycad added.

Revision 2678 - Directory Listing
Modified Wed Sep 23 23:54:16 2009 UTC (8 years ago) by jfenwick
Some fixes for compile errors for gcc_testing_version


Revision 2677 - Directory Listing
Modified Tue Sep 22 00:48:00 2009 UTC (8 years ago) by jfenwick
Removed stuff in user guide about needing to make table larger to allow
boundary points.
The table interpolation is now OMP parallel.



Revision 2676 - Directory Listing
Modified Mon Sep 21 08:06:37 2009 UTC (8 years ago) by gross
FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value

Revision 2675 - Directory Listing
Modified Mon Sep 21 02:32:17 2009 UTC (8 years ago) by gross
getMinValue added to the fault system.

Revision 2673 - Directory Listing
Modified Fri Sep 18 05:33:10 2009 UTC (8 years, 1 month ago) by jfenwick
Some fixes to interpolation


Revision 2671 - Directory Listing
Modified Thu Sep 17 06:37:22 2009 UTC (8 years, 1 month ago) by gross
missing offset added in interpolation table

Revision 2669 - Directory Listing
Modified Thu Sep 17 06:01:30 2009 UTC (8 years, 1 month ago) by jfenwick
Added a bunch of valgrind supressions. Hopefully this will make it more useful.

Asking for an offset on a DataConstant containing no samples no longer fails under debug builds.
I've disabled the sample and dataPoint bounds checks since they don't make sense on DataConstant.

Revision 2668 - Directory Listing
Modified Thu Sep 17 04:04:09 2009 UTC (8 years, 1 month ago) by gross
some clarification in the table interpolation

Revision 2665 - Directory Listing
Modified Wed Sep 16 02:56:02 2009 UTC (8 years, 1 month ago) by gross
clarification in the fault depth vector

Revision 2663 - Directory Listing
Modified Tue Sep 15 06:04:44 2009 UTC (8 years, 1 month ago) by gross
finally there is a 3D version for the fault system class

Revision 2661 - Directory Listing
Modified Fri Sep 11 00:59:59 2009 UTC (8 years, 1 month ago) by artak
Finially unit tests for AMG preconditioner for single equations as well as for systems. Minor bug in AMG is also fixed

Revision 2654 - Directory Listing
Modified Tue Sep 8 07:11:12 2009 UTC (8 years, 1 month ago) by gross
2D fault systems are now working. 3D still needs work.

Revision 2653 - Directory Listing
Modified Tue Sep 8 04:26:30 2009 UTC (8 years, 1 month ago) by jfenwick
Fix bug in maxGlobalDataPoint and minGlobalDataPoint.
They now give the correct answers and the datapoint ids returned are globally
correct.

Removed some #defines from before COW
Removed hasNoSamples() - I don't trust myself to use that properly let alone anybody else.



Revision 2650 - Directory Listing
Modified Mon Sep 7 03:38:50 2009 UTC (8 years, 1 month ago) by jfenwick
Reducing the concentration of stupid.


Revision 2649 - Directory Listing
Modified Mon Sep 7 03:33:55 2009 UTC (8 years, 1 month ago) by gross
Some small fixes in FaultSystem

Revision 2647 - Directory Listing
Modified Fri Sep 4 05:25:25 2009 UTC (8 years, 1 month ago) by gross
fault system add. There is still an example for the usage missing.

Revision 2646 - Directory Listing
Modified Fri Sep 4 00:13:00 2009 UTC (8 years, 1 month ago) by jfenwick
Unit tests and user doco for interpolation and saveCSV

Revision 2644 - Directory Listing
Modified Wed Sep 2 04:14:03 2009 UTC (8 years, 1 month ago) by jfenwick
Add unit tests for saveDataCSV which should be ready for use now.
Keyword args are now output in sorted order.

Removed some unneeded functions.

Revision 2642 - Directory Listing
Modified Tue Sep 1 04:15:50 2009 UTC (8 years, 1 month ago) by jfenwick
pre cleanup

Revision 2641 - Directory Listing
Modified Mon Aug 31 07:41:49 2009 UTC (8 years, 1 month ago) by jfenwick
Fixed some of my stupids related to MPI compile errors.


Revision 2640 - Directory Listing
Modified Mon Aug 31 06:22:10 2009 UTC (8 years, 1 month ago) by jfenwick
Adding getMPIComm


Revision 2637 - Directory Listing
Modified Fri Aug 28 04:12:24 2009 UTC (8 years, 1 month ago) by jfenwick
saveDataCSV looks good but does not do MPI yet.
Also not unit tested.


Revision 2635 - Directory Listing
Modified Thu Aug 27 04:54:41 2009 UTC (8 years, 1 month ago) by jfenwick
A bunch of changes related to saveDataCSV.
[Not completed or unit tested yet]

Added saveDataCSV to util.py
AbstractDomain (and MeshAdapter) have a commonFunctionSpace method to 
take a group of FunctionSpaces and return something they can all be interpolated to.

Added pointToStream() in DataTypes to help print points.

added actsConstant() to data - required because DataConstant doesn't store samples the same way other Data do.

Revision 2628 - Directory Listing
Modified Tue Aug 25 03:50:00 2009 UTC (8 years, 1 month ago) by jfenwick
Fixed linkage on getTestDomainFunctionSpace.

added Data.interpolateTable to perform 2D interpolation.
It needs better unit tests though.

Revision 2627 - Directory Listing
Modified Mon Aug 24 01:57:34 2009 UTC (8 years, 1 month ago) by gross
some bugs in pycad fixed.


Revision 2626 - Directory Listing
Modified Mon Aug 24 00:48:31 2009 UTC (8 years, 1 month ago) by jfenwick
Making arg0 and arg params in C_GeneralTensorProduct non-optional.
[The using the default args caused an exception.]


Revision 2625 - Directory Listing
Modified Fri Aug 21 06:30:25 2009 UTC (8 years, 1 month ago) by jfenwick
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

Revision 2620 - Directory Listing
Modified Thu Aug 20 06:24:00 2009 UTC (8 years, 1 month ago) by gross
some small additions to pycad to make life a bit easier.

Revision 2607 - Directory Listing
Modified Tue Aug 18 01:02:56 2009 UTC (8 years, 2 months ago) by jfenwick
Added getMPIWorldSum function to the esys.escript module.
This function takes an integer from each member of the MPIWorld.
This will hopefully address mantis issue 359

Added unit tests for most of the c++ free functions in the module.




Revision 2602 - Directory Listing
Modified Tue Aug 11 00:38:42 2009 UTC (8 years, 2 months ago) by jfenwick
Merging changes made for release3.0 back to trunk.

Revision 2599 - Directory Listing
Modified Fri Aug 7 00:16:02 2009 UTC (8 years, 2 months ago) by caltinay
saveESD: added option to save mesh at each timestep if required.


Revision 2596 - Directory Listing
Modified Thu Aug 6 03:09:03 2009 UTC (8 years, 2 months ago) by lgao
Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)



Revision 2594 - Directory Listing
Modified Thu Aug 6 00:47:48 2009 UTC (8 years, 2 months ago) by gross
change to the default value for toListOfTuples

Revision 2592 - Directory Listing
Modified Thu Aug 6 00:43:19 2009 UTC (8 years, 2 months ago) by gross
additional tests for the Locator

Revision 2564 - Directory Listing
Modified Tue Jul 28 04:46:38 2009 UTC (8 years, 2 months ago) by gross
reduced PDE solutions added to topography

Revision 2563 - Directory Listing
Modified Tue Jul 28 03:50:45 2009 UTC (8 years, 2 months ago) by gross
reengineered version of the mountain class so it becomes easier to use for the convection code

Revision 2551 - Directory Listing
Modified Thu Jul 23 09:19:15 2009 UTC (8 years, 2 months ago) by gross
a problem with the sparse matrix unrolling fixed.

Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (8 years, 3 months ago) by jfenwick
Remainder of copyright date fixes

Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (8 years, 3 months ago) by jfenwick
Updating copyright notices

Revision 2535 - Directory Listing
Modified Thu Jul 16 23:39:58 2009 UTC (8 years, 3 months ago) by gross
LinearPDE is now updating stiffness matrix and right hand side even only geometry is modified. fix for 333

Revision 2534 - Directory Listing
Modified Thu Jul 16 06:49:19 2009 UTC (8 years, 3 months ago) by caltinay
Changed examples, tests and tutorials to save VTK files as .vtu instead .xml.
Visit doesn't know what to do with xml's and vtu is the proper extension
anyway.


Revision 2533 - Directory Listing
Modified Wed Jul 15 05:57:01 2009 UTC (8 years, 3 months ago) by gross
finley delivers now a status identifier of the mesh.

Revision 2526 - Directory Listing
Modified Wed Jul 8 05:52:06 2009 UTC (8 years, 3 months ago) by caltinay
util: Updated saveESD to allow saving of time series. Combined with an update
of the visit plugin this fixes issue 325.


Revision 2524 - Directory Listing
Modified Wed Jul 8 00:39:26 2009 UTC (8 years, 3 months ago) by artak
Minimum size of the coarsest level matrix option added to solver options

Revision 2523 - Directory Listing
Modified Wed Jul 8 00:07:36 2009 UTC (8 years, 3 months ago) by jfenwick
Fixed bug in MPI form of mkDir


Revision 2522 - Directory Listing
Modified Tue Jul 7 06:17:47 2009 UTC (8 years, 3 months ago) by jfenwick
Split test_util_spatial_functions.py into three python files (it had three classes in it).
This reduces memory required to compile down to about 600Mb each as opposed to >1Gb.

This should not affect the tests performed.

Revision 2521 - Directory Listing
Modified Tue Jul 7 00:08:58 2009 UTC (8 years, 3 months ago) by jfenwick
Modified Lazy so that resolving a single sample uses the node cache method.
Fixed some doxygen problems.

Revision 2519 - Directory Listing
Modified Mon Jul 6 00:43:08 2009 UTC (8 years, 3 months ago) by jfenwick
Correcting some doxygen errors

Revision 2517 - Directory Listing
Modified Fri Jul 3 05:27:45 2009 UTC (8 years, 3 months ago) by jfenwick
Fixed bug in Locator


Revision 2514 - Directory Listing
Modified Fri Jul 3 00:57:45 2009 UTC (8 years, 3 months ago) by jfenwick
Fixed compile warning on Mac



Revision 2513 - Directory Listing
Modified Thu Jul 2 08:42:11 2009 UTC (8 years, 3 months ago) by gross
some fixes in wave.py example

Revision 2502 - Directory Listing
Modified Tue Jun 30 05:49:22 2009 UTC (8 years, 3 months ago) by gross
tests for examples added. utest is not working yet.

Revision 2501 - Directory Listing
Modified Tue Jun 30 04:43:01 2009 UTC (8 years, 3 months ago) by jfenwick
Caching now works.
Number of levels and nodes permitted in a lazy expression has increased to 70 and 15000.

Revision 2500 - Directory Listing
Modified Tue Jun 30 00:42:38 2009 UTC (8 years, 3 months ago) by jfenwick
Experimental per node cache for lazy evaluation is now available via the 
LAZY_NODE_STORAGE #define 
It's a bit slower and larger for small problems but a bit faster and 
smaller for large (drucker prager) problems.


Revision 2499 - Directory Listing
Modified Mon Jun 29 04:31:00 2009 UTC (8 years, 3 months ago) by gross
new stand

Revision 2498 - Directory Listing
Modified Mon Jun 29 04:25:23 2009 UTC (8 years, 3 months ago) by gross
new function MaskFromTag

Revision 2497 - Directory Listing
Modified Mon Jun 29 00:04:45 2009 UTC (8 years, 3 months ago) by jfenwick
Calling resolve now replaces resolved expression with an identity node.


Revision 2496 - Directory Listing
Modified Fri Jun 26 06:09:47 2009 UTC (8 years, 3 months ago) by jfenwick
Added lazy version of swapaxes operation.

Revision 2493 - Directory Listing
Modified Thu Jun 25 02:58:52 2009 UTC (8 years, 3 months ago) by jfenwick
Taipan now prints an error message if new[] throws.
Note, the exception is rethrown after the message is printed.


Revision 2492 - Directory Listing
Modified Wed Jun 24 01:28:57 2009 UTC (8 years, 3 months ago) by gross
MPI_DOUBLE changed to MPI_INT as lowProc is int

Revision 2487 - Directory Listing
Modified Tue Jun 23 04:26:07 2009 UTC (8 years, 3 months ago) by jfenwick
Fixed const-ness on some return values.
Null-Domain now reports tag one as being in use.

Revision 2486 - Directory Listing
Modified Tue Jun 23 03:38:54 2009 UTC (8 years, 3 months ago) by gross
a bit more info are printed for the DarcyFlux now.

Revision 2485 - Directory Listing
Modified Mon Jun 22 07:27:31 2009 UTC (8 years, 3 months ago) by jfenwick
Added unit test file.


Revision 2484 - Directory Listing
Modified Mon Jun 22 04:22:19 2009 UTC (8 years, 3 months ago) by gross
numarray removed from docu; Locator revised.

Revision 2483 - Directory Listing
Modified Mon Jun 22 03:33:43 2009 UTC (8 years, 3 months ago) by jfenwick
And Joel closes the barn door.


Revision 2482 - Directory Listing
Modified Fri Jun 19 05:56:20 2009 UTC (8 years, 4 months ago) by jfenwick
Added run_data_access.py to unit tests - tests things like toListOfTuples.
Corrected some doco comments.
Added TestDomain class to escript.
This should allow more testing without resorting to finley.

Revision 2481 - Directory Listing
Modified Fri Jun 19 04:29:06 2009 UTC (8 years, 4 months ago) by jfenwick
Corrected a comment and fixed more bugs in the bulk copyFromArrayToOffset method.

Revision 2480 - Directory Listing
Modified Fri Jun 19 03:35:14 2009 UTC (8 years, 4 months ago) by gross
test fixed.

Revision 2479 - Directory Listing
Modified Thu Jun 18 06:50:37 2009 UTC (8 years, 4 months ago) by gross
paso returns now some diagnostics. SCSL has been removed.


Revision 2478 - Directory Listing
Modified Thu Jun 18 06:20:57 2009 UTC (8 years, 4 months ago) by jfenwick
Fixed bug when creating scalar expanded data.
Fixed some comments and moved a variable into anonymous namespace

Revision 2476 - Directory Listing
Modified Wed Jun 17 04:42:13 2009 UTC (8 years, 4 months ago) by jfenwick
Added maxGlobalDataPoint.
Not currently unit tested.

Revision 2474 - Directory Listing
Modified Tue Jun 16 06:32:15 2009 UTC (8 years, 4 months ago) by gross
linearPDEs has is now using the SolverOptions class to talk to PASO

Revision 2473 - Directory Listing
Modified Mon Jun 15 02:21:07 2009 UTC (8 years, 4 months ago) by jfenwick
Change logging functions so I don't get confused about what they do.
Added parameter to name the log file if called directly.

Revision 2472 - Directory Listing
Modified Thu Jun 11 23:33:47 2009 UTC (8 years, 4 months ago) by jfenwick
Added new params to control auto resolving for lazy data

Revision 2471 - Directory Listing
Modified Thu Jun 11 23:33:06 2009 UTC (8 years, 4 months ago) by jfenwick
Fixed extract of ndarray from xml to properly return booleans.
Modified some strings which had numarray:: in them

Revision 2470 - Directory Listing
Modified Thu Jun 11 08:32:32 2009 UTC (8 years, 4 months ago) by gross
SolverOption class added. It is not linked with anything.

Revision 2468 - Directory Listing
Modified Thu Jun 11 02:55:51 2009 UTC (8 years, 4 months ago) by gross
some more work toward numpy

Revision 2465 - Directory Listing
Modified Tue Jun 9 05:01:36 2009 UTC (8 years, 4 months ago) by jfenwick
Changed the default behaviour of Data::toListOfTuples() so that scalars are returned in tuples.
This is to match the behaviour of getTupleForDataPoint.

Revision 2461 - Directory Listing
Modified Fri Jun 5 05:06:31 2009 UTC (8 years, 4 months ago) by jfenwick
Trying to presize a list to reduce runtime of toListOfTuples


Revision 2459 - Directory Listing
Modified Thu Jun 4 06:17:54 2009 UTC (8 years, 4 months ago) by jfenwick
Removed some commented out code.
Added toListOfTuples to the DataObject.

Revision 2458 - Directory Listing
Modified Wed Jun 3 06:18:21 2009 UTC (8 years, 4 months ago) by jfenwick
Various numarray erasures


Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (8 years, 4 months ago) by jfenwick
Merging changes from numpy branch.


Revision 2448 - Directory Listing
Modified Fri May 29 04:47:48 2009 UTC (8 years, 4 months ago) by ahallam
Week 9: implemented cosine taper for wave function, need to work on direct method without lumping, wave propagation velocity is still not correct

Revision 2446 - Directory Listing
Modified Fri May 29 04:24:01 2009 UTC (8 years, 4 months ago) by gross
same adjustment of nameing

Revision 2445 - Directory Listing
Modified Fri May 29 03:23:25 2009 UTC (8 years, 4 months ago) by gross
some improvement on convection which ios now working again

Revision 2440 - Directory Listing
Modified Wed May 27 08:45:55 2009 UTC (8 years, 4 months ago) by gross
convection works now again.

Revision 2438 - Directory Listing
Modified Tue May 26 02:26:52 2009 UTC (8 years, 4 months ago) by gross
new version of power law (blame Hans)

Revision 2436 - Directory Listing
Modified Mon May 25 05:05:00 2009 UTC (8 years, 4 months ago) by jfenwick
A fix for escript not compiling on boost 1.39.


Revision 2432 - Directory Listing
Modified Wed May 20 06:06:20 2009 UTC (8 years, 5 months ago) by gross
power law and incompressible flow is running now

Revision 2431 - Directory Listing
Modified Wed May 20 03:39:57 2009 UTC (8 years, 5 months ago) by jfenwick
Added at the request of Dian.


Revision 2428 - Directory Listing
Modified Tue May 19 04:04:11 2009 UTC (8 years, 5 months ago) by gross
problem for python2.4 fixed: IOError has no attribute message.

Revision 2425 - Directory Listing
Modified Thu May 14 09:06:35 2009 UTC (8 years, 5 months ago) by gross
bug in getListOfTags fixed and some tested added

Revision 2422 - Directory Listing
Modified Thu May 14 03:17:28 2009 UTC (8 years, 5 months ago) by gross
bug in testing saveVTK fixed

Revision 2421 - Directory Listing
Modified Thu May 14 02:29:06 2009 UTC (8 years, 5 months ago) by gross
vtk writer supports now meta data and meta data schema

Revision 2417 - Directory Listing
Modified Wed May 13 08:18:47 2009 UTC (8 years, 5 months ago) by gross
some remarks on load and dump added to the users guide.

Revision 2415 - Directory Listing
Modified Wed May 13 02:48:39 2009 UTC (8 years, 5 months ago) by gross
FileWriter added: this class takes care of writing data which are global in MPI to a file. It is recommended to use this class rather then the build in open as it takes care of the case of many processors.

Revision 2403 - Directory Listing
Modified Wed Apr 29 06:08:18 2009 UTC (8 years, 5 months ago) by gross
units support Celsius, Farenheit and kelvin now

Revision 2399 - Directory Listing
Modified Tue Apr 28 12:04:34 2009 UTC (8 years, 5 months ago) by gross
some improvements on units

Revision 2398 - Directory Listing
Modified Tue Apr 28 04:41:53 2009 UTC (8 years, 5 months ago) by gross
first version of units in escript




Revision 2386 - Directory Listing
Modified Wed Apr 15 03:54:25 2009 UTC (8 years, 6 months ago) by gross
some minor fixes

Revision 2384 - Directory Listing
Modified Wed Apr 15 00:17:20 2009 UTC (8 years, 6 months ago) by jfenwick
Added getDataRW to DataC

Revision 2370 - Directory Listing
Modified Mon Apr 6 06:41:49 2009 UTC (8 years, 6 months ago) by gross
some modifications to docu for MPI

Revision 2354 - Directory Listing
Modified Wed Apr 1 04:01:58 2009 UTC (8 years, 6 months ago) by gross
some modifications to the Darcy flux solver to make it faster and more robust.

Revision 2351 - Directory Listing
Modified Tue Mar 31 08:26:41 2009 UTC (8 years, 6 months ago) by gross
some fixes in the transport solver

Revision 2349 - Directory Listing
Modified Mon Mar 30 08:14:23 2009 UTC (8 years, 6 months ago) by gross
first version of escript command: no MPI support yet.

Revision 2348 - Directory Listing
Modified Mon Mar 30 06:27:14 2009 UTC (8 years, 6 months ago) by gross
obsolet

Revision 2344 - Directory Listing
Modified Mon Mar 30 02:13:58 2009 UTC (8 years, 6 months ago) by jfenwick
Change __url__ to launchpad site


Revision 2337 - Directory Listing
Modified Thu Mar 26 07:07:42 2009 UTC (8 years, 6 months ago) by gross
Transport class uses now useBackwardEuler rather than the mysterious theta.

Revision 2325 - Directory Listing
Modified Thu Mar 19 05:32:13 2009 UTC (8 years, 7 months ago) by gross
tests for Lame equation added.

Revision 2323 - Directory Listing
Modified Thu Mar 19 04:23:32 2009 UTC (8 years, 7 months ago) by gross
test for Helmholtz added

Revision 2313 - Directory Listing
Modified Tue Mar 17 03:41:17 2009 UTC (8 years, 7 months ago) by gross
pyvisi is now rejecting to work under MPI with more than 1 processor. Tests for this configuration are dropped now.




Revision 2308 - Directory Listing
Modified Mon Mar 16 01:20:56 2009 UTC (8 years, 7 months ago) by gross
size_t may be 64 bits which is incompatible to MPI_INT. This problem is fixed by inserting a cast in Mesh_read.c. 
Moreover a fix has been added making sure that gmsh and triangle are executed on one processor only.




Revision 2305 - Directory Listing
Modified Mon Mar 16 00:19:41 2009 UTC (8 years, 7 months ago) by artak
verbose option is added

Revision 2304 - Directory Listing
Modified Fri Mar 13 03:17:24 2009 UTC (8 years, 7 months ago) by gross
a more robust way of doing whereZero and whereNotZero.

Revision 2303 - Directory Listing
Modified Fri Mar 13 01:34:36 2009 UTC (8 years, 7 months ago) by artak
This was the troublemaker for test failures on both MAC and Debian. I think numarry has a bug in memory managment. So we removed some numarray.array related lines in _givapp function and tests pass again.

Revision 2301 - Directory Listing
Modified Thu Mar 12 01:35:26 2009 UTC (8 years, 7 months ago) by gross
test for power law added

Revision 2300 - Directory Listing
Modified Wed Mar 11 08:17:57 2009 UTC (8 years, 7 months ago) by gross
a power law model. tests still need to be added and needs to be linked with an incompressible solver.

Revision 2288 - Directory Listing
Modified Tue Feb 24 06:11:48 2009 UTC (8 years, 7 months ago) by gross
a new idea for the sacling factor

Revision 2285 - Directory Listing
Modified Fri Feb 20 06:02:30 2009 UTC (8 years, 7 months ago) by jfenwick
Modified the escript python module.
If the escriptExitProfiling environment variable is set, then the 
contents of the status file from /proc will be copied to memescript.pid

This means we can log fun things like peak memory usage.

This only works on linux systems recent enough to have the status file.



Revision 2284 - Directory Listing
Modified Fri Feb 20 02:10:59 2009 UTC (8 years, 7 months ago) by gross
soem small fixes.

Revision 2283 - Directory Listing
Modified Fri Feb 20 01:08:21 2009 UTC (8 years, 7 months ago) by jfenwick
doxygen doco now correctly reports global project revsion number.
link to epydoc is now via a relative URL (avoids the problem of nightly doxygen pointing at out of date release epydoc).

Revision 2282 - Directory Listing
Modified Thu Feb 19 06:30:19 2009 UTC (8 years, 7 months ago) by jfenwick
setTaggedValueByName now throws if the tag name does not exist.
The documentation says this is what happens - now the code matches the doco.
This resolves issue 238

Revision 2279 - Directory Listing
Modified Tue Feb 17 10:51:12 2009 UTC (8 years, 8 months ago) by gross
mofification of the weighting factor

Revision 2278 - Directory Listing
Modified Tue Feb 17 07:39:16 2009 UTC (8 years, 8 months ago) by gross
for some reason my gcc version requires NL at the end of the source files.

Revision 2277 - Directory Listing
Modified Tue Feb 17 07:38:07 2009 UTC (8 years, 8 months ago) by gross
type fixed

Revision 2273 - Directory Listing
Modified Tue Feb 17 01:22:48 2009 UTC (8 years, 8 months ago) by jfenwick
Added compile flags to turn autolazy on and off.
These are for testing purposes only.


Revision 2272 - Directory Listing
Modified Mon Feb 16 23:40:03 2009 UTC (8 years, 8 months ago) by jfenwick
Stop icpc on savanna warning about ignoring namespaces.


Revision 2271 - Directory Listing
Modified Mon Feb 16 05:08:29 2009 UTC (8 years, 8 months ago) by jfenwick
Merging version 2269 to trunk


Revision 2267 - Directory Listing
Modified Thu Feb 12 06:18:45 2009 UTC (8 years, 8 months ago) by gross
weighting factor introduced.

Revision 2265 - Directory Listing
Modified Wed Feb 11 07:46:07 2009 UTC (8 years, 8 months ago) by gross
somehow the fix of the test did not make it into the repository.

Revision 2264 - Directory Listing
Modified Wed Feb 11 06:48:28 2009 UTC (8 years, 8 months ago) by gross
a new darcy flux solver.

Revision 2261 - Directory Listing
Modified Tue Feb 10 08:38:53 2009 UTC (8 years, 8 months ago) by gross
GMRES supports prconditioning from the right now.

Revision 2260 - Directory Listing
Modified Tue Feb 10 04:50:10 2009 UTC (8 years, 8 months ago) by jfenwick
That should be the last of the copyWithMask related errors.



Revision 2259 - Directory Listing
Modified Tue Feb 10 01:49:44 2009 UTC (8 years, 8 months ago) by jfenwick
Fixes errors due to feeding scalars and vectors into the same call to maximum.


Revision 2256 - Directory Listing
Modified Mon Feb 9 06:20:32 2009 UTC (8 years, 8 months ago) by jfenwick
Throw an exception if AbstractDomain::MPIBarrier is called (This shouldn't happen).
Added Barrier to saveVTK.
Replaced some misused keywords.


Revision 2255 - Directory Listing
Modified Mon Feb 9 06:10:13 2009 UTC (8 years, 8 months ago) by gross
problem in maximum fixed.

Revision 2251 - Directory Listing
Modified Fri Feb 6 06:50:39 2009 UTC (8 years, 8 months ago) by gross
new compressible flow solver

Revision 2249 - Directory Listing
Modified Fri Feb 6 00:11:51 2009 UTC (8 years, 8 months ago) by jfenwick
Fixed some pathing issues.


Revision 2246 - Directory Listing
Modified Thu Feb 5 06:04:55 2009 UTC (8 years, 8 months ago) by jfenwick
Made some changes to the way copyWithMask works.


Revision 2245 - Directory Listing
Modified Wed Feb 4 06:27:59 2009 UTC (8 years, 8 months ago) by gross
renaming to make _GMRESm visibale

Revision 2242 - Directory Listing
Modified Wed Feb 4 05:04:20 2009 UTC (8 years, 8 months ago) by jfenwick
Development continues on unit test framework


Revision 2239 - Directory Listing
Modified Wed Feb 4 00:42:46 2009 UTC (8 years, 8 months ago) by jfenwick
Added pyvisi and c++ unit tests to build of utest.sh

Revision 2237 - Directory Listing
Modified Tue Feb 3 06:14:19 2009 UTC (8 years, 8 months ago) by gross
better method to du clipping

Revision 2235 - Directory Listing
Modified Tue Feb 3 01:47:47 2009 UTC (8 years, 8 months ago) by jfenwick
Added support for generating non-scons test scripts

Revision 2231 - Directory Listing
Modified Fri Jan 30 05:16:05 2009 UTC (8 years, 8 months ago) by jfenwick
Modified scons files to compile c++ unit tests with the same options used to compile the libraries.


Revision 2210 - Directory Listing
Modified Tue Jan 13 03:49:47 2009 UTC (8 years, 9 months ago) by artak
First version of the mountains class.

Revision 2208 - Directory Listing
Modified Mon Jan 12 06:37:07 2009 UTC (8 years, 9 months ago) by gross
more work on the dary solver 



Revision 2204 - Directory Listing
Modified Fri Jan 9 01:33:39 2009 UTC (8 years, 9 months ago) by caltinay
Fixed a little doxygen typo in the hyperlink.


Revision 2200 - Directory Listing
Modified Thu Jan 8 23:55:40 2009 UTC (8 years, 9 months ago) by jfenwick
Fixed python string substitution in error messages for trace and transpose.
Added tests for invalid axis offsets for trace on the c++ side.

Revision 2199 - Directory Listing
Modified Thu Jan 8 06:10:52 2009 UTC (8 years, 9 months ago) by jfenwick
Misc fixes:
Added some svn:ignore properties for output files that were cluttering things up.

Lazy fixes:
Fixed shape calculations for TRACE and TRANSPOSE for rank>2.
Adjusted unit test accordingly.

As a Temporary change to DataC.cpp to test for lazy data in DataC's expanded check.
This is wrong but would only affect people using lazy data.
The proper fix will come when the numarray removal code moves over from the branch.

Made tensor product AUTOLAZY capable.
Fixed some bugs resolving tensor products (incorrect offsets in buffers).
Macro'd some stray couts.

- It appears that AUTOLAZY now passes all unit tests.
- It will not be _really_ safe for general use until I can add COW. 
- (Everything's better with COW)

Revision 2197 - Directory Listing
Modified Thu Jan 8 05:49:16 2009 UTC (8 years, 9 months ago) by gross
modifications to the way cosntraints are handeled in the Transport problem



Revision 2195 - Directory Listing
Modified Wed Jan 7 04:13:52 2009 UTC (8 years, 9 months ago) by jfenwick
Fixed a bug in lazy evaluation of Tensor Products.
Added / to end of boost path


Revision 2188 - Directory Listing
Modified Tue Dec 23 04:24:03 2008 UTC (8 years, 9 months ago) by caltinay
Implemented new utility function saveESD() which takes care of dumping the
given data objects with their domain and creates an ESD file containing the
required information. This obsoletes the necessity to use esdcreate for single
timestep datasets.


Revision 2182 - Directory Listing
Modified Thu Dec 18 03:30:17 2008 UTC (8 years, 10 months ago) by caltinay
Fixed some more typos


Revision 2179 - Directory Listing
Modified Thu Dec 18 00:23:55 2008 UTC (8 years, 10 months ago) by caltinay
Fixed compilation with boost 1.37 (namespace clash).


Revision 2177 - Directory Listing
Modified Wed Dec 17 23:51:23 2008 UTC (8 years, 10 months ago) by jfenwick
used unused variable.
Added support for limiting the size of lazy expression trees.
500,000 seems a bit high

Revision 2171 - Directory Listing
Modified Wed Dec 17 08:21:29 2008 UTC (8 years, 10 months ago) by phornby
Unitary minus applied to unsigned returns unsigned error fixed
lines 1124 & 1142. Probably not what was intended......

Revision 2170 - Directory Listing
Modified Wed Dec 17 06:16:43 2008 UTC (8 years, 10 months ago) by jfenwick
Another unit test fix


Revision 2169 - Directory Listing
Modified Wed Dec 17 03:08:58 2008 UTC (8 years, 10 months ago) by caltinay
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 2).
All epydoc warnings for these files have been fixed.
This commit should be a no-op.


Revision 2167 - Directory Listing
Modified Tue Dec 16 23:31:05 2008 UTC (8 years, 10 months ago) by jfenwick
Adjust tests for changes to number of buffers required.
Prevent cpp unit test from failing.

Revision 2166 - Directory Listing
Modified Tue Dec 16 06:08:02 2008 UTC (8 years, 10 months ago) by jfenwick
Fixed a bug related to lazy trace

Revision 2158 - Directory Listing
Modified Mon Dec 15 07:17:47 2008 UTC (8 years, 10 months ago) by caltinay
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 1).
This commit should be a no-op.


Revision 2157 - Directory Listing
Modified Mon Dec 15 06:05:58 2008 UTC (8 years, 10 months ago) by jfenwick
Some lazy fixes to the symmetric operation.

Revision 2156 - Directory Listing
Modified Mon Dec 15 05:09:02 2008 UTC (8 years, 10 months ago) by gross
some modifications to the iterative solver to make them easier to use. 
There are also improved versions of the Darcy flux solver and the incompressible solver.



Revision 2154 - Directory Listing
Modified Mon Dec 15 01:50:56 2008 UTC (8 years, 10 months ago) by trankine
* added include based on Joel's advice. Build now working on win32. unit tests not run yet...

Revision 2153 - Directory Listing
Modified Fri Dec 12 00:18:18 2008 UTC (8 years, 10 months ago) by jfenwick
Fixed a bug related to lazy tensor product.

Revision 2152 - Directory Listing
Modified Thu Dec 11 04:26:42 2008 UTC (8 years, 10 months ago) by jfenwick
Fixed some errors related to lazy processing of scalars.
AutoLazy passes more unit tests before failing.

Revision 2147 - Directory Listing
Modified Wed Dec 10 04:41:26 2008 UTC (8 years, 10 months ago) by jfenwick
Made some changes to c++ unit tests to accomodate AUTOLAZY.
whereZero and whereNonZero can now work with lazy data.
There are some double frees if AUTOLAZY is turned on so don't use it yet.

Revision 2146 - Directory Listing
Modified Wed Dec 10 02:59:46 2008 UTC (8 years, 10 months ago) by jfenwick
Replaced duplicate code in Data with macro calls.
Added AUTOLAZY parameter (defaults to off for now.)

Revision 2142 - Directory Listing
Modified Tue Dec 9 06:22:57 2008 UTC (8 years, 10 months ago) by jfenwick
Added showEscriptParams to output a list of available params.


Revision 2125 - Directory Listing
Modified Wed Dec 3 09:13:10 2008 UTC (8 years, 10 months ago) by phornby
Just the usual signed/unsigned mismatch corrections. Should be harmless.
this checkin is to propagate the changes to other platforms for testing.

Revision 2123 - Directory Listing
Modified Wed Dec 3 03:26:02 2008 UTC (8 years, 10 months ago) by gross
typo fixed

Revision 2108 - Directory Listing
Modified Fri Nov 28 05:09:23 2008 UTC (8 years, 10 months ago) by gross
some minor changes to PCG and some extra suspicious characters.

Revision 2105 - Directory Listing
Modified Fri Nov 28 01:52:12 2008 UTC (8 years, 10 months ago) by jfenwick
Data::copySelf() now returns an object instead of a pointer.
Fixed a bug in copyFromArray relating to expanded data.

Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (8 years, 10 months ago) by gross
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.




Revision 2098 - Directory Listing
Modified Tue Nov 25 12:04:36 2008 UTC (8 years, 10 months ago) by phornby
Fix unsigned/signed comparison.

Revision 2097 - Directory Listing
Modified Tue Nov 25 12:03:29 2008 UTC (8 years, 10 months ago) by phornby
moved the code

#ifndef __const
# if (defined __STDC__ && __STDC__) || defined __cplusplus
#  define __const	const
# else
#  define __const
# endif
#endif

from escript/src/system_dep.h to esysUtils/src/system_dep.h, just for blocktimer's sake.


Revision 2092 - Directory Listing
Modified Tue Nov 25 04:18:17 2008 UTC (8 years, 10 months ago) by jfenwick
Added macro to disable debug output from Lazy Data.

Revision 2089 - Directory Listing
Modified Mon Nov 24 06:07:29 2008 UTC (8 years, 10 months ago) by jfenwick
Resolve mantis issue 216.

Removed the asAbstractContinuousDomain(X) member which did not take cast 
failure into account.
Rewrote the few places where it was used.




Revision 2087 - Directory Listing
Modified Mon Nov 24 04:51:30 2008 UTC (8 years, 10 months ago) by jfenwick
Addressing mantis issue #221.
Interpolation.. and probeInterpolation.. now "work" for the NullDomain.
Work means throw a descriptive exception if you try to move into or out 
of the NullDomain.
The bad_cast exception related to this has been fixed.



Revision 2086 - Directory Listing
Modified Mon Nov 24 02:38:50 2008 UTC (8 years, 10 months ago) by jfenwick
Added checks in C_GeneralTensorProduct (Data:: and Delayed forms) as 
well as the DataAbstract Constructor to prevent Objects with Rank>4 
being created.

Moved the relevant #define into systemdep.

Removed some comments.


Revision 2085 - Directory Listing
Modified Mon Nov 24 00:45:48 2008 UTC (8 years, 10 months ago) by jfenwick
Added c++ unit tests for new operations.
Added resolve to some operations in Data


Revision 2084 - Directory Listing
Modified Fri Nov 21 05:20:42 2008 UTC (8 years, 10 months ago) by jfenwick
Fixed a warning in cpp unit tests under dodebug
Pointed the url for python doco at shake200 rather than iservo.
Added support for trace and transpose to LazyData.
Fixed bug in trace to initialise running totals.

Revision 2082 - Directory Listing
Modified Fri Nov 21 01:46:05 2008 UTC (8 years, 10 months ago) by caltinay
Removed unused variable.


Revision 2081 - Directory Listing
Modified Fri Nov 21 01:28:31 2008 UTC (8 years, 10 months ago) by caltinay
escript/Data: Another fix for parallel var initialization. Also, the (error) return value of MPI_Gather was not used. I applied the same 'hack' as in other places in the file, namely declaring the variable beforehand but still ignoring the return value :-/


Revision 2078 - Directory Listing
Modified Thu Nov 20 16:10:10 2008 UTC (8 years, 10 months ago) by phornby
Two changes.

1. Move blocktimer from escript to esysUtils.
2. Make it possible to link to paso as a DLL or .so.

Should have no effect on 'nix's

In respect of 1., blocktimer had begun to spring up everywhere, so
for the moment I thought it best to move it to the only other library that
pops up all over the place.

In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast
option, which does aggressive multi-file optimisations. Even in its current form, it either
vectorises or parallelises  hundreds more loops in the esys system than appear in the pragmas.

In achieving 2. I have not been too delicate in adding

PASO_DLL_API

declarations to the .h files in paso/src. Only toward the end of the process of
the conversion, when the number of linker errors dropped below 20, say, did I choosy about what
functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines
declared as external functions symbols that are in fact internal to the paso DLL. 
Why is this an issue?  It prevents the intelc compiler from getting aggressive on the paso module.
With pain there is sometimes gain. At least all the DLL rules in windows give good
(non-microsoft) compiler writers a chance to really shine.

So, if you should see a PASO_DLL_API on a function in a paso header file,
and think to yourself, "that function is only called in paso, why export it?", then feel free to
delete the PASO_DLL_API export declaration.

Here's hoping for no breakage.....

Revision 2076 - Directory Listing
Modified Thu Nov 20 12:34:17 2008 UTC (8 years, 10 months ago) by phornby

I may get into trouble for this.
boost-python 1.34 does have a docstring_options class,
but does not have a 3 argument constructor for
it. So the test has been modified to 


#if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)

If you wish to make things more delicate, one can define a 2 argument construction
of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly.

Hope that this has not broken anything for anyone else. The SVN logs suggest this is a
little fragile.....

Also, please be aware that much of our chemistry interface code, that we wish to use with
escript, makes extensive use of boost python.
Having two different boost versions mucking with the python interpreter sounds
like a really bad idea, I'm sure you'll agree.
The problem is that it is not a simple task for us to build new versions of boost-python
on all our platforms. Consequently, it would be nice to be informed when you guys
intend to upgrade a support library of this nature so that we can plan and allocate
resources to keep up.

Cheers.



Revision 2066 - Directory Listing
Modified Thu Nov 20 05:31:33 2008 UTC (8 years, 10 months ago) by jfenwick
Fixed Data::toString to look at the amount of data actually stored rather than the number of points in the domain.

Added support for GeneralTensorProduct to LazyData

Revision 2064 - Directory Listing
Modified Thu Nov 20 04:06:34 2008 UTC (8 years, 10 months ago) by jfenwick
docstring_options was added in boost 1.34 - macro'd it out if you are 
compiling earlier than that.


Revision 2063 - Directory Listing
Modified Wed Nov 19 04:59:43 2008 UTC (8 years, 10 months ago) by jfenwick
- Removed some deprecated directories.
- Removed the pythfilter script for converting python doco into c++ stubs. The license was unspecified and we don't use it.
- Suppressed long long warnings on gcc (the Mac complained).
- svn:ignored Mac library suffixes in lib directory

Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (8 years, 10 months ago) by jfenwick
Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

Revision 2053 - Directory Listing
Modified Mon Nov 17 11:24:40 2008 UTC (8 years, 11 months ago) by phornby
Fix the test for erf() under intelc on windows to something more informative.

Revision 2051 - Directory Listing
Modified Mon Nov 17 09:24:02 2008 UTC (8 years, 11 months ago) by phornby
Now add the erf() test back for windows under the intelc compiler.



Revision 2050 - Directory Listing
Modified Mon Nov 17 08:59:57 2008 UTC (8 years, 11 months ago) by phornby
OK, I have to include this file in the experiment
to use the intelc math library on windows.



Revision 2049 - Directory Listing
Modified Mon Nov 17 08:54:33 2008 UTC (8 years, 11 months ago) by phornby
A little refinement of what to leave out of UnaryFuncs.h
if using the intelc compiler on windows.



Revision 2048 - Directory Listing
Modified Mon Nov 17 08:46:00 2008 UTC (8 years, 11 months ago) by phornby
Experimental commit to move the code to a windows box
on the other side of a firewall. Purpose: add support for the
imploved intelc math library on windows.



Revision 2041 - Directory Listing
Modified Sat Nov 15 12:45:15 2008 UTC (8 years, 11 months ago) by phornby
ESYS_STATIC_LIB no longer needs to be defined in SConscript files.

Revision 2037 - Directory Listing
Modified Thu Nov 13 06:17:12 2008 UTC (8 years, 11 months ago) by jfenwick
Fixed some warnings in the unit tests.
Added support for symmetric and nonsymmetric operations on LazyData.

Revision 2032 - Directory Listing
Modified Wed Nov 12 08:11:19 2008 UTC (8 years, 11 months ago) by phornby
Missed an extra additional CPPDEFINES for the py_wrapper_local_env.



Revision 2031 - Directory Listing
Modified Wed Nov 12 08:02:33 2008 UTC (8 years, 11 months ago) by phornby
Need finer control than INTERFACE_STATIC_LIB could exert. Now there is a
XXX_STATIC_LIB for each lib.



Revision 2030 - Directory Listing
Modified Wed Nov 12 07:34:08 2008 UTC (8 years, 11 months ago) by phornby
Fix the undef'fing of _DLL_API in windows case.



Revision 2029 - Directory Listing
Modified Wed Nov 12 07:27:05 2008 UTC (8 years, 11 months ago) by phornby
Test a more elegant way of handling XXX_DLL_API macros.



Revision 2027 - Directory Listing
Modified Tue Nov 11 02:52:24 2008 UTC (8 years, 11 months ago) by phornby
Ensure ESCRIPT_EXPORTS is defined only while compiling escript on windows.
A similar comment applies to FINLEY_EXPORTS.

SConstruct:
Fixed a comment.
reformatted the Export() call, and added IS_WINDOWS_PLATFORM to the exports.

Revision 2021 - Directory Listing
Modified Mon Nov 10 14:07:49 2008 UTC (8 years, 11 months ago) by phornby
Use the NO_ARG trick on the PROC_OP macro expansions.



Revision 2019 - Directory Listing
Modified Mon Nov 10 13:49:00 2008 UTC (8 years, 11 months ago) by phornby
Yet another concerted effort to handle missing macro arguments
in a portable way.



Revision 2018 - Directory Listing
Modified Mon Nov 10 13:31:43 2008 UTC (8 years, 11 months ago) by phornby
Only import mathimf.h on win32 with intelc. Allow others to use the
standard math.h

change the #ifndef const -> #ifndef __const (oops!!)



Revision 2008 - Directory Listing
Modified Mon Nov 10 08:59:14 2008 UTC (8 years, 11 months ago) by phornby
Signed/unsigned comparisons eliminated (just loop variables, easy fix).

Revision 2007 - Directory Listing
Modified Mon Nov 10 06:34:11 2008 UTC (8 years, 11 months ago) by jfenwick
Added a private operator= to Taipan to prevent people from copying trying to copy instances.
Not that we have any of that.... but if someone ever tries, we'll be ready for them.

I have come to the conclusion that -Weffc++ is not usable for us. Its output is too noisy complaining about classes which we do not control.

Revision 2005 - Directory Listing
Modified Mon Nov 10 01:21:39 2008 UTC (8 years, 11 months ago) by jfenwick
Bringing all changes across from schroedinger.
(Note this does not mean development is done, just that it will happen
on the trunk for now).
If anyone notices any problems please contact me.



Revision 1981 - Directory Listing
Modified Thu Nov 6 05:27:33 2008 UTC (8 years, 11 months ago) by jfenwick
More warning removal.


Revision 1977 - Directory Listing
Modified Thu Nov 6 03:54:35 2008 UTC (8 years, 11 months ago) by jfenwick
More warning removal.

Revision 1962 - Directory Listing
Modified Tue Nov 4 07:17:31 2008 UTC (8 years, 11 months ago) by gross
there is an offet missing when copy data to a data point.



Revision 1956 - Directory Listing
Modified Mon Nov 3 05:08:42 2008 UTC (8 years, 11 months ago) by gross
bug fixed.

Revision 1953 - Directory Listing
Modified Thu Oct 30 07:01:11 2008 UTC (8 years, 11 months ago) by phornby
removed one signed/unsigned value comparison. The remaining one at line 863 is far more difficult to deal with.

Revision 1952 - Directory Listing
Modified Thu Oct 30 06:16:00 2008 UTC (8 years, 11 months ago) by jfenwick
Fixed /* in a comment.
The rank of a datapoint is now an unsigned int.


Revision 1946 - Directory Listing
Modified Wed Oct 29 05:48:53 2008 UTC (8 years, 11 months ago) by jfenwick
A cleanup of some of the problems I found doing a Wall compile.

Removed some commented out lines.
Swapped some member initialisers.
Removed virtual qualifiers from some methods in FunctionSpace.
Fixed some unused or (possibly) uninitialised variables.



Revision 1921 - Directory Listing
Modified Thu Oct 23 11:32:24 2008 UTC (8 years, 11 months ago) by phornby
Jump through hoops to meet the OPENMP 2.5 restrictions on loop variables.
It's all ready for OPENMP 3.0 improvments, and should compile cleanly on other platforms.



Revision 1918 - Directory Listing
Modified Thu Oct 23 09:14:13 2008 UTC (8 years, 11 months ago) by phornby
fix a signed and unsigned integer comparison. As your meshes get larger, this type of error will bite.

Revision 1897 - Directory Listing
Modified Mon Oct 20 00:32:30 2008 UTC (8 years, 11 months ago) by jfenwick
Modified Data::toString() so it doesn't throw on DataEmpty.
Added setEscriptParamInt and getEscriptParamInt as free functions.
At the moment all they do is allow you to set the param TOO_MANY_LINES.
This is used to determine when printing a Data object will show you the 
points and when it will print a summary.

I've set the default value back to 80 lines.
If you need to see more lines use (in python):

setEscriptParamInt("TOO_MANY_LINES",80000)



Revision 1896 - Directory Listing
Modified Sun Oct 19 23:16:21 2008 UTC (8 years, 11 months ago) by gross
small fixes.

Revision 1887 - Directory Listing
Modified Wed Oct 15 03:26:25 2008 UTC (9 years ago) by ksteube
Fixed two typos that stopped the test suite from running.

Also, gcc 4.3.2 issued several warnings not seen before:
ignoring the return value of fscanf and using the wrong format
with printf.


Revision 1878 - Directory Listing
Modified Tue Oct 14 03:39:13 2008 UTC (9 years ago) by gross
new version of JacobiFree Newton GMRES + test added.

Revision 1877 - Directory Listing
Modified Tue Oct 14 02:58:39 2008 UTC (9 years ago) by ksteube
convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.

mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.

Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.

A more general solution might be possible in the future.


Revision 1874 - Directory Listing
Modified Mon Oct 13 05:15:55 2008 UTC (9 years ago) by ksteube
num_equations -> numEquations


Revision 1873 - Directory Listing
Modified Mon Oct 13 04:32:22 2008 UTC (9 years ago) by jfenwick
Fixed a compile error under MPI.
Cleaned up a comment.


Revision 1872 - Directory Listing
Modified Mon Oct 13 00:18:55 2008 UTC (9 years ago) by jfenwick
Closing the moreshared branch


Revision 1870 - Directory Listing
Modified Thu Oct 9 08:49:53 2008 UTC (9 years ago) by gross
a bug in the nc test fixed (hopefully.)

Revision 1861 - Directory Listing
Modified Wed Oct 8 04:20:07 2008 UTC (9 years ago) by gross
minres test are switched on

Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (9 years ago) by gross
first version of testing for transport solver.

Revision 1857 - Directory Listing
Modified Tue Oct 7 23:58:44 2008 UTC (9 years ago) by jfenwick
Updated doco to describe the behaviour of inf, sup and Lsup for cases 
where none of the tags in use in the domain have values.

It confused me when I was testing.



Revision 1856 - Directory Listing
Modified Tue Oct 7 07:10:47 2008 UTC (9 years ago) by gross
The NC dump tests work now with MPI.
In fact the old test did not exactly what it supposed to



Revision 1855 - Directory Listing
Modified Tue Oct 7 05:25:30 2008 UTC (9 years ago) by jfenwick
Modified Data::copyWithMask to have a less cryptic implementation.


Revision 1847 - Directory Listing
Modified Fri Oct 3 06:45:34 2008 UTC (9 years ago) by phornby
OK, these get the blahcpp.so names correct now.



Revision 1846 - Directory Listing
Modified Fri Oct 3 06:42:35 2008 UTC (9 years ago) by gross
bug fixed.

Revision 1845 - Directory Listing
Modified Fri Oct 3 05:23:47 2008 UTC (9 years ago) by gross
some naming problem for the installation of escriptcpp and finleycpp. Apparently this came is trough some mofifications in windows

Revision 1841 - Directory Listing
Modified Fri Oct 3 03:57:52 2008 UTC (9 years ago) by gross
modification on LinearPDE class and a first version of Transport class

Revision 1840 - Directory Listing
Modified Fri Oct 3 03:16:11 2008 UTC (9 years ago) by phornby
These now install the correct .pyd files on windows.

Revision 1838 - Directory Listing
Modified Fri Oct 3 02:05:01 2008 UTC (9 years ago) by phornby
add 4 missing  ESCRIPT_DLL_API that prevented linking.

Revision 1837 - Directory Listing
Modified Fri Oct 3 02:03:07 2008 UTC (9 years ago) by phornby
Just getting run_tests going. I now recall that windows python will look for a .pyd
and not a .dll. So somehow we must install the python wrapper .dlls as a .pyds
I'll get to that later.

Revision 1835 - Directory Listing
Modified Thu Oct 2 10:18:03 2008 UTC (9 years ago) by phornby
There is no unistd.h on windows, as the name would imply.
I assume it is included for gethostname only.

Revision 1834 - Directory Listing
Modified Thu Oct 2 09:48:45 2008 UTC (9 years ago) by phornby
Remove a signed/unsigned comparison

Revision 1833 - Directory Listing
Modified Thu Oct 2 09:47:24 2008 UTC (9 years ago) by phornby
One cannot give a static function external linkage
(eigenvalues_and_eigenvectors and swapaxes).
I'm not even sure the external linkage is needed for inline functions.

Revision 1827 - Directory Listing
Modified Thu Oct 2 04:28:07 2008 UTC (9 years ago) by ksteube
MPI parallelized dump/load for Constant and Tagged data.
run_escriptOnFinley.py runs hybrid MPI/OpenMP.


Revision 1819 - Directory Listing
Modified Tue Sep 30 05:58:06 2008 UTC (9 years ago) by artak
Firs version of symmetric Gauss-Seidel preconditioner with coloring

Revision 1817 - Directory Listing
Modified Tue Sep 30 04:03:40 2008 UTC (9 years ago) by ksteube
Install runmodel.py into bin
Remove obsolete script esysXML.py


Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (9 years ago) by ksteube
Copyright updated in all files


Revision 1809 - Directory Listing
Modified Thu Sep 25 06:43:44 2008 UTC (9 years ago) by ksteube
Copyright updated in all python files


Revision 1808 - Directory Listing
Modified Thu Sep 25 03:14:56 2008 UTC (9 years ago) by jfenwick
Removed some commented out lines.
Modified DataExpanded to not throw when creating objects with zero 
samples.
Modified toString() to report "(data contains no samples)" rather than 
printing a blank line.
Modified DataExpanded::dump() and load so that they do not attempt so 
save/load the ids and data fields if the data object contains no 
samples.




Revision 1806 - Directory Listing
Modified Thu Sep 25 00:36:10 2008 UTC (9 years ago) by ksteube
Cleaned up use of gethostname


Revision 1805 - Directory Listing
Modified Wed Sep 24 23:39:00 2008 UTC (9 years ago) by ksteube
Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.


Revision 1803 - Directory Listing
Modified Wed Sep 24 06:20:29 2008 UTC (9 years ago) by jfenwick
All about making DataEmpty instances throw.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Exposed getDim from AbstractDomain to python to fix bug.

Added isEmpty member to DataAbstract to allow it to throw is queries are 
made about a DataEmpty instance.


Added exceptions to DataAbstract, DataEmpty and Data to prevent calls 
being made against DataEmpty objects.
The following still work as expected on DataEmpty instances

copy, getDomain, getFunctionSpace, isEmpty, isExpanded, isProtected, 
isTagged, setprotection.

You can also call interpolate, however it should throw if you try to 
change FunctionSpaces.



Revision 1802 - Directory Listing
Modified Tue Sep 23 01:03:29 2008 UTC (9 years ago) by jfenwick
Added canTag methods to FunctionSpace and AbstractDomain (and its 
offspring).
This checks to see if the domain supports tags for the given type of 
function space.

Constructors for DataTagged now throw exceptions if you attempt to make 
a DataTagged with a FunctionSpace which does not support tags.
To allow the default constructor to work, NullDomain has a single 
functioncode which "supports" tagging.

Fixed a bug in DataTagged::toString and DataTypes::pointToString.

Added FunctionSpace::getListOfTagsSTL.

algorithm(DataTagged, BinaryFunction) in DataAlgorithm now only 
processes tags known to be in use.
This fixes mantis issue #0000186.

Added comment to Data.h intro warning about holding references if the 
underlying DataAbstract changes.

_python_ unit tests have been updated to test TaggedData with invalid 
FunctionSpaces and to give the correct answers to Lsup etc.



Revision 1801 - Directory Listing
Modified Fri Sep 19 01:37:09 2008 UTC (9 years, 1 month ago) by ksteube
Fixed serialization of I/O for MPI...code didn't compile without MPI


Revision 1800 - Directory Listing
Modified Thu Sep 18 05:28:20 2008 UTC (9 years, 1 month ago) by ksteube
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().


Revision 1799 - Directory Listing
Modified Wed Sep 17 06:33:18 2008 UTC (9 years, 1 month ago) by jfenwick
Added Data::copySelf() [Note: this is exposed as copy() in python].
This method returns a pointer to a deep copy of the target.
There are c++ tests but no python tests for this yet.

All DataAbstracts now have a deepCopy() which simplifies the 
implementation of the compy methods.



Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (9 years, 1 month ago) by jfenwick
Merged noarrayview branch onto trunk.



Revision 1788 - Directory Listing
Modified Mon Sep 15 02:20:20 2008 UTC (9 years, 1 month ago) by gross
levelset in the way laurent did it.

Revision 1787 - Directory Listing
Modified Mon Sep 15 01:36:34 2008 UTC (9 years, 1 month ago) by artak
MINRES solver is added to escript. Additional 16 tests are added to run_simplesolve for MINRES and TFQMR solvers

Revision 1771 - Directory Listing
Modified Mon Sep 8 22:47:55 2008 UTC (9 years, 1 month ago) by ksteube
Removed failing test until we fix a bug.
Fixed several compiler warnings.


Revision 1757 - Directory Listing
Modified Mon Sep 8 02:28:38 2008 UTC (9 years, 1 month ago) by gross
no ifdef _OPENMP required

Revision 1748 - Directory Listing
Modified Wed Sep 3 06:10:39 2008 UTC (9 years, 1 month ago) by ksteube
MPI parallelism for Data().dump and load.  Use multiple NetCDF
files, one file per MPI process


Revision 1737 - Directory Listing
Modified Fri Aug 29 03:01:29 2008 UTC (9 years, 1 month ago) by gross
the MaskFromBoundaryTag function didn't make much sense. The argument function_space is replaced by domain.



Revision 1719 - Directory Listing
Modified Thu Aug 21 06:24:29 2008 UTC (9 years, 1 month ago) by gross
robust function to normalize data object added

Revision 1718 - Directory Listing
Modified Thu Aug 21 05:50:11 2008 UTC (9 years, 1 month ago) by gross
method returning reference id added to FunctionSpace class

Revision 1717 - Directory Listing
Modified Thu Aug 21 05:24:35 2008 UTC (9 years, 1 month ago) by gross
function to calculate value closest to given value added

Revision 1716 - Directory Listing
Modified Thu Aug 21 05:03:49 2008 UTC (9 years, 1 month ago) by gross
getListOfTags method added to FunctionSpace class

Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (9 years, 2 months ago) by ksteube
Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.


Revision 1703 - Directory Listing
Modified Thu Aug 14 05:34:25 2008 UTC (9 years, 2 months ago) by artak
TFQMR solver is added to PASO solver. It is not parallelised yet.

Revision 1695 - Directory Listing
Modified Fri Aug 8 04:28:28 2008 UTC (9 years, 2 months ago) by artak
test_NoPDE_vector_variable is changed to avoid 0/0 division

Revision 1693 - Directory Listing
Modified Fri Aug 8 04:22:58 2008 UTC (9 years, 2 months ago) by jfenwick
Modified toString() on Data objects.
str(x) or print x will now print a summary of the data rather than all 
the points if the output would take more than 80 lines.



Revision 1679 - Directory Listing
Modified Wed Jul 30 00:09:12 2008 UTC (9 years, 2 months ago) by artak
now convection works for other solvers as well, besides PCG.

Revision 1673 - Directory Listing
Modified Thu Jul 24 22:28:50 2008 UTC (9 years, 2 months ago) by gross
more algorithms for level set

Revision 1664 - Directory Listing
Modified Tue Jul 22 03:41:38 2008 UTC (9 years, 2 months ago) by ksteube
Install() on Mac OS was naming shared libs file.dylib...not OK for our
libraries for python calling C++ (escriptcpp.so and finleycpp.so).
This is because python's dlopen() calls only look for .so files.


Revision 1662 - Directory Listing
Modified Tue Jul 22 01:49:21 2008 UTC (9 years, 2 months ago) by ksteube
Ran a simple Escript program on Mac OS Darwin. Still much to do.


Revision 1661 - Directory Listing
Modified Mon Jul 21 22:08:27 2008 UTC (9 years, 2 months ago) by gross
some improvements on level set

Revision 1659 - Directory Listing
Modified Fri Jul 18 02:28:13 2008 UTC (9 years, 3 months ago) by gross
some first version of a robust level set

Revision 1649 - Directory Listing
Modified Tue Jul 15 08:41:02 2008 UTC (9 years, 3 months ago) by phornby
Make operator=() on exception non-virtual. Should silence the Altix compiler.
However, if an exception is cast to another parent type, and
operator=() is called when the exception so cast is an l-value in the assignment,
an "incomplete" assignment will occur, copying only the parent class members of the 
l-value in the assignmnet.

Revision 1644 - Directory Listing
Modified Tue Jul 15 05:25:32 2008 UTC (9 years, 3 months ago) by phornby
tmp_str was unused var on windows.

Revision 1639 - Directory Listing
Modified Mon Jul 14 08:55:25 2008 UTC (9 years, 3 months ago) by gross


Revision 1637 - Directory Listing
Modified Mon Jul 14 05:34:59 2008 UTC (9 years, 3 months ago) by ksteube
Resolved some compiler warnings
Changed blocktimer to not use strdup, intead malloc and strcpy


Revision 1635 - Directory Listing
Modified Sat Jul 12 10:00:50 2008 UTC (9 years, 3 months ago) by phornby
Last commit hung. Trying to recover. Also, remove excessive extern C {} I introduced



Revision 1634 - Directory Listing
Modified Sat Jul 12 09:08:33 2008 UTC (9 years, 3 months ago) by phornby
linux_gcc_eg_options.py:
remove the std99 option, it is no longer needed as the code compiles without
C 1999 extension (need for these extensions elinminated in windows port).
Turn on all warnings except unknown pragmas. Should catch a lot of stuff.

SConstruct:
Impassioned plea

system_dep.h:
Add the standard incantation for dealing with const declarations
in C code called from C and C++

blocktimer:
Get the calling interface right for C code called from C and C++
and use __const as defined in system_dep.h
(Should be re-factored into compiler_dep.h file).

MeshAdapterFactory.cpp:
Since we have (effectively) no control over netCDF policy,
cast const char *'s to char *'s



Revision 1631 - Directory Listing
Modified Sat Jul 12 07:16:39 2008 UTC (9 years, 3 months ago) by trankine
eliminate unused var argument of catch statement.

Revision 1628 - Directory Listing
Modified Fri Jul 11 13:12:46 2008 UTC (9 years, 3 months ago) by phornby

Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.

You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.

Here is a list of the conflicts and their resolution at this
point in time.


=================================================================================
(LLWS == looks like white space).

finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================

This currently passes tests on linux (debian), but is not checked on windows or Altix yet.

This checkin is to make a trunk I can check out for windows to do tests on it.

Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.

May the God of doughnuts have mercy on my soul.



Revision 1625 - Directory Listing
Modified Thu Jul 10 23:55:31 2008 UTC (9 years, 3 months ago) by gross
interpolate accepts now float and numarray as argument

Revision 1620 - Directory Listing
Modified Fri Jun 27 02:30:18 2008 UTC (9 years, 3 months ago) by ksteube
Included more MPI configuration options on Savanna


Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (9 years, 4 months ago) by ksteube
Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering


Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (9 years, 4 months ago) by ksteube
scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.


Revision 1562 - Directory Listing
Modified Wed May 21 13:04:40 2008 UTC (9 years, 4 months ago) by gross
The algebraic upwinding with MPI. The case of boundary constraint needs still some attention. 



Revision 1561 - Directory Listing
Modified Wed May 21 06:58:52 2008 UTC (9 years, 4 months ago) by ksteube
Added python method printParallelThreadCounts() to tell how many MPI CPUs and OpenMP threads we are using (for testing hybrid runs)


Revision 1559 - Directory Listing
Modified Wed May 21 04:27:15 2008 UTC (9 years, 4 months ago) by ksteube
Compiles and runs on Savanna (hostname service0)


Revision 1557 - Directory Listing
Modified Mon May 19 04:44:27 2008 UTC (9 years, 5 months ago) by artak
some changes to ArithmenticTuple class

Revision 1554 - Directory Listing
Modified Fri May 9 02:50:49 2008 UTC (9 years, 5 months ago) by artak
minor changes

Revision 1552 - Directory Listing
Modified Thu May 8 08:52:41 2008 UTC (9 years, 5 months ago) by gross
some changes to make the implementatiopn of a upwind MPI version easier

Revision 1551 - Directory Listing
Modified Wed May 7 23:11:44 2008 UTC (9 years, 5 months ago) by artak
RILU canged to ILU0 to fix today's test failure

Revision 1550 - Directory Listing
Modified Wed May 7 02:22:57 2008 UTC (9 years, 5 months ago) by artak
coupled method is added, but it's still not working

Revision 1542 - Directory Listing
Modified Wed Apr 30 03:40:15 2008 UTC (9 years, 5 months ago) by artak
#s and #e replaced by %s and %e 

Revision 1541 - Directory Listing
Modified Wed Apr 30 02:05:29 2008 UTC (9 years, 5 months ago) by ksteube
Changed #s to %s in print


Revision 1527 - Directory Listing
Modified Tue Apr 29 00:52:01 2008 UTC (9 years, 5 months ago) by ksteube
Changed from printing doubles with %s to %e


Revision 1519 - Directory Listing
Modified Tue Apr 22 03:45:36 2008 UTC (9 years, 5 months ago) by artak
Initial version of NewtonGMRES solver. Still to do: 1. The atol and rtol define globally. 2. Decide about N 

Revision 1517 - Directory Listing
Modified Fri Apr 18 02:36:37 2008 UTC (9 years, 6 months ago) by artak
stopping criteriums are combined for GMRES,MINRES and TFQMR in stoppingcriterium2

Revision 1514 - Directory Listing
Modified Wed Apr 16 00:15:44 2008 UTC (9 years, 6 months ago) by artak
default input parameter iter_restart for GMRES is set to 20

Revision 1513 - Directory Listing
Modified Tue Apr 15 08:47:57 2008 UTC (9 years, 6 months ago) by gross
pragma ivdep removed. icc produced wrong code.

Revision 1489 - Directory Listing
Modified Mon Apr 14 04:29:30 2008 UTC (9 years, 6 months ago) by artak
Initial version of TFQMR method

Revision 1488 - Directory Listing
Modified Fri Apr 11 00:22:31 2008 UTC (9 years, 6 months ago) by artak
restart parameter is changed in GMRES(m)

Revision 1487 - Directory Listing
Modified Thu Apr 10 05:28:01 2008 UTC (9 years, 6 months ago) by gross
reordering when reading Netcfd files added.

Revision 1486 - Directory Listing
Modified Thu Apr 10 00:10:50 2008 UTC (9 years, 6 months ago) by artak
minor

Revision 1484 - Directory Listing
Modified Wed Apr 9 03:25:53 2008 UTC (9 years, 6 months ago) by artak
minor: PCG set as default solver

Revision 1482 - Directory Listing
Modified Wed Apr 9 02:29:47 2008 UTC (9 years, 6 months ago) by artak
inital x taken into account in MINRES algorithm

Revision 1481 - Directory Listing
Modified Wed Apr 9 00:45:47 2008 UTC (9 years, 6 months ago) by artak
initial version of MINRES algorithm

Revision 1476 - Directory Listing
Modified Mon Apr 7 23:38:50 2008 UTC (9 years, 6 months ago) by gross
Jacobian-free Newton method added to Paso

Revision 1475 - Directory Listing
Modified Mon Apr 7 05:13:21 2008 UTC (9 years, 6 months ago) by artak
Initial version of GMRES with restart

Revision 1473 - Directory Listing
Modified Fri Apr 4 07:49:18 2008 UTC (9 years, 6 months ago) by gross
initial checkin for level set

Revision 1470 - Directory Listing
Modified Thu Apr 3 05:17:54 2008 UTC (9 years, 6 months ago) by gross
bug in pressure definition fixed

Revision 1469 - Directory Listing
Modified Thu Apr 3 05:16:56 2008 UTC (9 years, 6 months ago) by gross
additional stopping criterion added

Revision 1468 - Directory Listing
Modified Thu Apr 3 04:14:48 2008 UTC (9 years, 6 months ago) by gross
test for GMRES added

Revision 1467 - Directory Listing
Modified Wed Apr 2 08:10:37 2008 UTC (9 years, 6 months ago) by gross
a bit of reengineering.

Revision 1465 - Directory Listing
Modified Wed Apr 2 03:28:25 2008 UTC (9 years, 6 months ago) by artak


Revision 1455 - Directory Listing
Modified Thu Feb 28 17:19:44 2008 UTC (9 years, 7 months ago) by phornby
Merge of branches/windows_from_1431_trunk.

Revamp of the exception system.
Fix unused vars and signed/unsigned comparisons.
defined a macro THROW(ARG) in the system_dep.h's to
deal with the expectations of declarations on different architectures.

Details in the logs of branches/windows_from_1431_trunk.

pre-merge snapshot of the trunk in tags/trunk_at_1452



Revision 1431 - Directory Listing
Modified Wed Feb 27 09:52:25 2008 UTC (9 years, 7 months ago) by trankine
This trunk now compiles and links under windows.
It passes the FunctionSpace.__str__() test 50000 times on windows.
It fails scons run_tests and scons_py_tests as it always did, but I have an idea why.

Please remember to add the appropriate dll linkage info to declarations that are to be visible outside a .so or .dll. Terry (BTW, PGH here) spent a lot of hacks clearing out blocktimer from the rest of the code when these 5 or 6 lines would have done the trick.

Revision 1430 - Directory Listing
Modified Wed Feb 27 09:07:19 2008 UTC (9 years, 7 months ago) by trankine
Get the windows dll linkage right fo C_TensorBinaryOperation

Revision 1429 - Directory Listing
Modified Wed Feb 27 08:53:20 2008 UTC (9 years, 7 months ago) by trankine
"and" and "or" are not C or C++ boolean operations.

Revision 1428 - Directory Listing
Modified Wed Feb 27 08:07:11 2008 UTC (9 years, 7 months ago) by trankine
Merge changes from windows port branch to test build on *nix not broken.

Revision 1426 - Directory Listing
Modified Wed Feb 27 06:12:15 2008 UTC (9 years, 7 months ago) by trankine
Merge the changes to these few files with the windows port branch to test just these changes under linux and altix.

Revision 1423 - Directory Listing
Modified Wed Feb 27 04:28:48 2008 UTC (9 years, 7 months ago) by gross
interpoilation inserted

Revision 1417 - Directory Listing
Modified Mon Feb 25 04:45:48 2008 UTC (9 years, 7 months ago) by gross
some more work on the transport solver.

Revision 1414 - Directory Listing
Modified Thu Feb 14 10:01:43 2008 UTC (9 years, 8 months ago) by gross
a first verion of a Stokes solver

Revision 1410 - Directory Listing
Modified Thu Feb 7 04:24:00 2008 UTC (9 years, 8 months ago) by gross
a new version of the algebric upwinding a. flux limiter

Revision 1409 - Directory Listing
Modified Wed Feb 6 22:44:28 2008 UTC (9 years, 8 months ago) by gross
getTagNumber called the wrong corresponding FunctionSpace method. Results were wrong for number of data points per sample >1.

Revision 1407 - Directory Listing
Modified Mon Feb 4 06:45:48 2008 UTC (9 years, 8 months ago) by gross
new upwinding algorithm (still fails)

Revision 1400 - Directory Listing
Modified Thu Jan 24 06:04:31 2008 UTC (9 years, 8 months ago) by gross
better test example for upwinding added

Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (9 years, 9 months ago) by trankine
And get the *(&(*&(* name right

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (9 years, 9 months ago) by trankine
Original Path: temp/escript
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (9 years, 9 months ago) by phornby
Original Path: temp_trunk_copy/escript
Make a temp copy of the trunk before checking in the windows changes



Revision 1376 - Directory Listing
Modified Wed Jan 9 01:38:18 2008 UTC (9 years, 9 months ago) by gross
inserted sys.exit(1) into the tests so scons can detect the failure of the test. 
A similar statement has been removed from an earlier as it produces problems on 64bit Linux. Previously exit(0) was called in case of success but now this is not done in order to avoid a fatal end of the program. in the case of an error in the test there could be a fatal error so but I guess that this not really a problem.

PS: the fact that signal 0 was returned even for the case of an error lead to the illusion that all tests have been completed successfully.



Revision 1374 - Directory Listing
Modified Tue Jan 8 09:37:55 2008 UTC (9 years, 9 months ago) by gross
some changes to get things going on the cognac.ivec.org.

Revision 1370 - Directory Listing
Modified Wed Jan 2 09:21:43 2008 UTC (9 years, 9 months ago) by gross
explicit upwinding scheme added.

Revision 1367 - Directory Listing
Modified Wed Dec 19 02:45:07 2007 UTC (9 years, 10 months ago) by gross
finley can now assemble a transport problem.

Revision 1364 - Directory Listing
Modified Mon Dec 17 07:22:45 2007 UTC (9 years, 10 months ago) by gross
finley interface to paso's transport solver added.

Revision 1361 - Directory Listing
Modified Fri Dec 14 09:26:51 2007 UTC (9 years, 10 months ago) by gross
first steps towards a flux controlled transport solver.

Revision 1358 - Directory Listing
Modified Wed Dec 5 03:41:06 2007 UTC (9 years, 10 months ago) by gross
setTaggedValue works now for expanded data.

Revision 1357 - Directory Listing
Modified Thu Nov 29 08:39:32 2007 UTC (9 years, 10 months ago) by gross
interplote function returns now argument if it has requested function space

Revision 1355 - Directory Listing
Modified Thu Nov 29 00:53:31 2007 UTC (9 years, 10 months ago) by ksteube
Test didn't compile on Windows due to lack of cast to double


Revision 1353 - Directory Listing
Modified Thu Nov 22 06:05:35 2007 UTC (9 years, 10 months ago) by matt
Reversed the removal of blocktimer code. This needs to be fixed properly for
the Windows stuff to work.



Revision 1351 - Directory Listing
Modified Thu Nov 22 01:54:26 2007 UTC (9 years, 10 months ago) by matt
Removed blocktimer code from gradOn().


Revision 1350 - Directory Listing
Modified Thu Nov 22 01:17:20 2007 UTC (9 years, 10 months ago) by matt
Disambiguation of more template argument parameters so that it compiles under Windows.


Revision 1349 - Directory Listing
Modified Wed Nov 21 06:38:08 2007 UTC (9 years, 10 months ago) by matt
Disambiguation of several template argument parameters so that it compiles under Windows.


Revision 1347 - Directory Listing
Modified Fri Nov 16 05:37:07 2007 UTC (9 years, 11 months ago) by ksteube
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.


Revision 1334 - Directory Listing
Modified Thu Oct 25 05:08:54 2007 UTC (9 years, 11 months ago) by matt
Initial rewrite of escript unary operations. The rewritten operations are now single-pass.


Revision 1332 - Directory Listing
Modified Tue Oct 23 03:28:51 2007 UTC (9 years, 11 months ago) by matt
Pow now uses the new binary function interface of C_TensorBinaryOperation.


Revision 1331 - Directory Listing
Modified Tue Oct 23 00:42:15 2007 UTC (9 years, 11 months ago) by gross
ArithmeticTuple added. It is useful for certain applications of PCG

Revision 1330 - Directory Listing
Modified Mon Oct 22 04:54:49 2007 UTC (9 years, 11 months ago) by gross
more flexible stopping criterium for the PCG

Revision 1328 - Directory Listing
Modified Mon Oct 15 03:23:15 2007 UTC (10 years ago) by matt
Fixed bug in power operation.


Revision 1327 - Directory Listing
Modified Fri Oct 12 07:10:40 2007 UTC (10 years ago) by matt
Initial rewrite of binary escript operations.



Revision 1325 - Directory Listing
Modified Mon Oct 1 06:28:24 2007 UTC (10 years ago) by matt
DataArray has been removed as it is no longer used. Unit tests have been
updated accordingly with substitute constructs. Any files pertaining to
DataArray have been removed.



Revision 1323 - Directory Listing
Modified Thu Sep 27 06:20:29 2007 UTC (10 years ago) by matt
Minor inconsistency.


Revision 1319 - Directory Listing
Modified Thu Sep 27 00:27:51 2007 UTC (10 years ago) by matt
DataArray is no longer needed. However, the unit tests still require it.


Revision 1314 - Directory Listing
Modified Tue Sep 25 01:46:27 2007 UTC (10 years ago) by ksteube
Copied a couple more files from MPI branch to trunk


Revision 1313 - Directory Listing
Modified Tue Sep 25 01:44:26 2007 UTC (10 years ago) by ksteube
Copied a handful of files from trunk-mpi-branch into trunk


Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (10 years ago) by ksteube
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.


Revision 1310 - Directory Listing
Modified Mon Sep 24 04:00:47 2007 UTC (10 years ago) by ksteube
A few additions to make trunk match trunk-mpi-branch


Revision 1250 - Directory Listing
Modified Thu Aug 16 02:54:42 2007 UTC (10 years, 2 months ago) by ksteube
Minor repairs to scons files


Revision 1247 - Directory Listing
Modified Tue Aug 14 01:29:20 2007 UTC (10 years, 2 months ago) by ksteube
New python method getVersion() which returns the Subversion revision
from which escript was compiled


Revision 1246 - Directory Listing
Modified Mon Aug 13 22:09:00 2007 UTC (10 years, 2 months ago) by phornby
Add the esys and lib directories to the repository.
Remove the IS_WINDOWS_PLATFORM from the SConscripts, and
do the logic once in SConstruct.
SConstruct now includes example options files if the hostname_options file is not present. 
This needs some more work for the altix.
The tests now depend upon the build target. This is important it seems, as there appears to be the
possibility of calling linking different libraries
against incompatible versions of sub-libraries. 
This addressed most of the exceptions we were getting on windows.
All the useNetCDF logic is now done by SConstruct.
Made the init_target part of the build alias so that __ini__.py is created on a fresh checkout.

py_tests mostly pass on windows, only need to track down the exception in run_tests.

Revision 1235 - Directory Listing
Modified Mon Aug 13 00:25:29 2007 UTC (10 years, 2 months ago) by phornby
Started the removal of IS_WINDOWS_PLATFORM, and now insis that the windows options file be kept up to date, and be complete.

boost_libs -> boost_lib.

Revision 1204 - Directory Listing
Modified Sat Jun 23 11:43:12 2007 UTC (10 years, 3 months ago) by gross
a frame for an improved lumping procedure added.

Revision 1174 - Directory Listing
Modified Tue May 29 07:05:59 2007 UTC (10 years, 4 months ago) by gross
more modifications to the test rquired by the new intergartion schemes

Revision 1171 - Directory Listing
Modified Fri May 25 06:55:05 2007 UTC (10 years, 4 months ago) by gross
some modifications to the tests to consider the new integration schemes for tri and tet

Revision 1149 - Directory Listing
Modified Thu May 17 00:30:15 2007 UTC (10 years, 5 months ago) by gross
some fixes from the windows version

Revision 1141 - Directory Listing
Modified Tue May 15 04:24:51 2007 UTC (10 years, 5 months ago) by gross
Some changes to make things run on windows. There is still a problem with netcdf an long file names on windows but there is the suspicion that this is a bigger problem related to boost (compiler options). In fact runs with large numbers of iteration/time steps tend to create seg faults. 

Revision 1139 - Directory Listing
Modified Mon May 14 05:12:53 2007 UTC (10 years, 5 months ago) by ksteube
Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.


Revision 1137 - Directory Listing
Modified Thu May 10 08:11:31 2007 UTC (10 years, 5 months ago) by gross
This version passes the tests on windows except for 

   * vtk
   * netCDF

The version needs to be tested on altix and linux

Revision 1131 - Directory Listing
Modified Tue May 8 05:52:21 2007 UTC (10 years, 5 months ago) by gross
netcdf c++ interface removed

Revision 1130 - Directory Listing
Modified Tue May 8 04:23:51 2007 UTC (10 years, 5 months ago) by gross


Revision 1129 - Directory Listing
Modified Tue May 8 04:23:25 2007 UTC (10 years, 5 months ago) by gross


Revision 1128 - Directory Listing
Modified Tue May 8 04:22:53 2007 UTC (10 years, 5 months ago) by gross


Revision 1127 - Directory Listing
Modified Tue May 8 03:23:12 2007 UTC (10 years, 5 months ago) by gross


Revision 1125 - Directory Listing
Modified Thu May 3 05:40:30 2007 UTC (10 years, 5 months ago) by ksteube
Print more convergence info in the verbose output


Revision 1122 - Directory Listing
Modified Tue May 1 03:21:04 2007 UTC (10 years, 5 months ago) by gross
As the LinearPDE uses coefficients as reduced even if they are handed
over as full the projector runs into a problem when reduced and full
arguments are used in the same projector. Now the projector resets the
coefficients befor starting the projection.



Revision 1118 - Directory Listing
Modified Tue Apr 24 08:55:04 2007 UTC (10 years, 5 months ago) by gross
problem with reset of faulty PDE rhs fixed.

Revision 1107 - Directory Listing
Modified Thu Apr 19 02:14:18 2007 UTC (10 years, 6 months ago) by gross
Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.



Revision 1106 - Directory Listing
Modified Thu Apr 19 01:54:57 2007 UTC (10 years, 6 months ago) by gross
I take it all back! Ignore the last check in.



Revision 1105 - Directory Listing
Modified Thu Apr 19 01:10:49 2007 UTC (10 years, 6 months ago) by gross
The modification fixes a problem with the garbage collection in python. 
The problem seems that a default value of a method argument is seen as
being dependend on the the instance of the class. This produces a
circular dependence and can stop the garbage collection to delete the
object. The situation becomes in particulary bad if the class provides a
__del__ method as it is not clear where to break the circle.

We need to revisit all python classes in escript & Co to remove this
possible problem. 



Revision 1092 - Directory Listing
Modified Fri Apr 13 03:39:49 2007 UTC (10 years, 6 months ago) by gross
the useless profilinf for data.cpp removed (doDebug=yes should work again)
and a small bug in the gmsh reader fixed.


Revision 1072 - Directory Listing
Modified Thu Mar 29 06:44:30 2007 UTC (10 years, 6 months ago) by gross
PDE assemblage for reduced integration order + tests added.



Revision 1064 - Directory Listing
Modified Tue Mar 27 06:21:02 2007 UTC (10 years, 6 months ago) by gross
test for reduced integration order for grad, interpolate and integrate added.
Bug shown by the tests have been fixed.



Revision 1063 - Directory Listing
Modified Mon Mar 26 08:29:18 2007 UTC (10 years, 6 months ago) by gross
test for creation of reduced function spaces added.
tests for dumping data on reduced function spaces added.
This showed a small bug with compilation setting for compilation with netCDF which is fixed



Revision 1062 - Directory Listing
Modified Mon Mar 26 06:17:53 2007 UTC (10 years, 6 months ago) by gross
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.

Revision 1059 - Directory Listing
Modified Fri Mar 23 11:01:53 2007 UTC (10 years, 6 months ago) by gross
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.

Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (10 years, 7 months ago) by gross
clear name tagging is supported now.

Revision 1042 - Directory Listing
Modified Mon Mar 19 03:50:34 2007 UTC (10 years, 7 months ago) by gross
a small fix which deals with the case that a Model class
does not take the argument debug.




Revision 1034 - Directory Listing
Modified Wed Mar 14 23:49:20 2007 UTC (10 years, 7 months ago) by gross
In VC++ boost has problems with numarray arguments from python. This
fixes that problem by taking python::object arguments from the python
level and converting it into python::numeric::array on the C++ level.
This hasn't been tested with VC++ yet.

Moreover the two Data methods dealing with big numarrays as argument and
return value have been removed.



Revision 1032 - Directory Listing
Modified Wed Mar 14 06:32:09 2007 UTC (10 years, 7 months ago) by phornby
Implement inverse hyp. functions.



Revision 1031 - Directory Listing
Modified Wed Mar 14 06:03:21 2007 UTC (10 years, 7 months ago) by phornby
Finer control of the inverse hyp. functions.



Revision 1030 - Directory Listing
Modified Wed Mar 14 05:14:44 2007 UTC (10 years, 7 months ago) by phornby
Assemble_CopyElementData.c - resolve with my local edits.
Mesh_saveVTK.c - remove debug print.
DataArrayView.h - remove dllim/export declarations on template functions.



Revision 1028 - Directory Listing
Modified Wed Mar 14 00:15:24 2007 UTC (10 years, 7 months ago) by gross
modifications to be compliant with _WIN32. The substitutes for asinh, acosh, atanh are still missing (erf will through an exception)

Revision 1026 - Directory Listing
Modified Tue Mar 13 08:25:00 2007 UTC (10 years, 7 months ago) by phornby
Data.cpp - indefed out the erf & inv. hyperbolics on windows.
DataAlgorithmAdapterTestCase & DataTestCase - Fix the ifndef on _WIN32 & _INTEL_COMPILER
SConstruct - chamges to the PATH so windows can find DLLs.



Revision 1023 - Directory Listing
Modified Tue Mar 13 05:43:36 2007 UTC (10 years, 7 months ago) by gross
netCDF can now be switched off at compilation. Consequently load and dump of data objects is not available then.

Revision 1022 - Directory Listing
Modified Tue Mar 13 02:25:53 2007 UTC (10 years, 7 months ago) by phornby
Now define the destructors for all the Exceptions (sorry guys & gals).



Revision 1020 - Directory Listing
Modified Mon Mar 12 10:12:36 2007 UTC (10 years, 7 months ago) by phornby
Added explicit destructors to all Exception classes.

Fixed an ifdef in TestCase.cpp

Made the conditional definition of M_PI in LocalOps.h
depend only on M_PI being undefined.

Replace dynamically dimensioned arrays in DataFactory & DataTagged with malloc.

sort() method of list does not take a named argument
(despite the manual's claims to the contary).



Revision 990 - Directory Listing
Modified Wed Feb 21 04:27:52 2007 UTC (10 years, 7 months ago) by ksteube
Cleaned up the python in-line doc to make epydoc work better

Configured for shake71 to find NetCDF libraries


Revision 985 - Directory Listing
Modified Tue Feb 20 04:02:10 2007 UTC (10 years, 7 months ago) by gross
 small bug for openmp fixed.

Revision 984 - Directory Listing
Modified Tue Feb 20 03:33:45 2007 UTC (10 years, 7 months ago) by gross
warning in dump and load at altix fixed.

Revision 983 - Directory Listing
Modified Tue Feb 20 02:49:08 2007 UTC (10 years, 7 months ago) by gross
full Data object dump and load now available. Tests added.

Revision 982 - Directory Listing
Modified Mon Feb 19 23:55:52 2007 UTC (10 years, 7 months ago) by gross
data object load checks for sample  ordering now.

Revision 980 - Directory Listing
Modified Mon Feb 19 05:12:38 2007 UTC (10 years, 8 months ago) by gross
bug in Simulation fixed.

Revision 975 - Directory Listing
Modified Thu Feb 15 10:18:18 2007 UTC (10 years, 8 months ago) by gross
first steps towards restart in modelframe

Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (10 years, 8 months ago) by ksteube
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.



Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (10 years, 8 months ago) by ksteube
Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.



Revision 967 - Directory Listing
Modified Tue Feb 13 09:40:12 2007 UTC (10 years, 8 months ago) by gross
dump and load of expanded data via netCDF added. some test are still missing.

Revision 966 - Directory Listing
Modified Tue Feb 13 05:45:18 2007 UTC (10 years, 8 months ago) by gross
ops! escript/src/DataExpanded.cpp should not be in there

Revision 965 - Directory Listing
Modified Tue Feb 13 05:38:45 2007 UTC (10 years, 8 months ago) by gross
johns local setting removed.

Revision 964 - Directory Listing
Modified Tue Feb 13 05:10:26 2007 UTC (10 years, 8 months ago) by gross
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI).
Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will
profit form this at this stage but it will allow a faster dump of data objects.



Revision 957 - Directory Listing
Modified Tue Feb 13 00:33:00 2007 UTC (10 years, 8 months ago) by gross
some test about lists added.

Revision 956 - Directory Listing
Modified Tue Feb 13 00:03:40 2007 UTC (10 years, 8 months ago) by gross
Older versions of numarray dont have the "all" function. The test has been modified to run for these order versions. too.



Revision 954 - Directory Listing
Modified Fri Feb 9 08:56:14 2007 UTC (10 years, 8 months ago) by gross
testing for completness if simulations improved.

Revision 952 - Directory Listing
Modified Wed Feb 7 23:53:24 2007 UTC (10 years, 8 months ago) by gross
testing of simulation completness improved.

Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (10 years, 8 months ago) by gross
escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed. 



Revision 944 - Directory Listing
Modified Tue Jan 30 08:57:37 2007 UTC (10 years, 8 months ago) by gross
PropertySet added

Revision 939 - Directory Listing
Modified Thu Jan 25 04:23:38 2007 UTC (10 years, 8 months ago) by gross
bug in finley mesh reader fixed

Revision 938 - Directory Listing
Modified Thu Jan 25 03:40:54 2007 UTC (10 years, 8 months ago) by gross
the FinleyReade accepts now gmsh files (use format="gmsh")
and
Simulations are accepting Models only. Moreover, there is a test now
if a all Models targeted by a model in the simulation or a subsimulation
are included in  simulation or a subsimulation. 



Revision 926 - Directory Listing
Modified Fri Jan 12 06:31:37 2007 UTC (10 years, 9 months ago) by gross
modelframe support dictonaries with fixed type of key and value. only writing implemented yet

Revision 924 - Directory Listing
Modified Wed Jan 10 03:39:27 2007 UTC (10 years, 9 months ago) by trankine
Win32 port modifications
"or" is not a valid modifier under win intel compiler

* Data.cpp - incorrect "or"s
* DataExpanded.cpp - incorrect "or"s



Revision 922 - Directory Listing
Modified Fri Jan 5 04:23:05 2007 UTC (10 years, 9 months ago) by gross
setValueOfDataPoint accepts double value as argument now

Revision 921 - Directory Listing
Modified Fri Jan 5 00:54:37 2007 UTC (10 years, 9 months ago) by gross
I have done some clarification on functions that allow to access individual data point values in a Data object. 
The term "data point number" is always local on a MPI process and referes to the value (data_point_in_sample, sample)
as a single identifyer (data_point_in_sample + sample * number_data_points_per_sample). a "global data point number"
referes to a tuple of a processour id and local data point number.

The function convertToNumArrayFromSampleNo has been removed now and convertToNumArrayFromDPNo renamed to getValueOfDataPoint.
There are two new functions:

   getNumberOfDataPoints
   setValueOfDataPoint

This allows you to do things like:

  in=Data(..)
  out=Data(..)
   for i in xrange(in.getNumberOfDataPoints())
       in_loc=in.getValueOfDataPoint(i)
       out_loc=< some operations on in_loc>
       out.setValueOfDataPoint(i,out_loc)


Also mindp  is renamed to  minGlobalDataPoint and there is a new function getValueOfGlobalDataPoint. While in MPI the functions getNumberOfDataPoints and getValueOfDataPoint are working locally on each process (so the code above is executed in parallel).
the latter allows getting a single value across all processors. 



Revision 920 - Directory Listing
Modified Thu Jan 4 00:00:40 2007 UTC (10 years, 9 months ago) by gross
small fix on DataSource.fromDom

Revision 918 - Directory Listing
Modified Wed Jan 3 06:30:00 2007 UTC (10 years, 9 months ago) by gross
fixes on ESySXML to get runmodel going.

    * object ids are now local for read and write of XML
    * ParameterSets are now written with class name
    * ParameterSets linked by other ParameterSets (previously only Models) are written now 
    * list are now lists of str (rather than bools), lists with bool, int or float are mapped to numarray
    * numarray are writen with generic types Bool, Int, Float (portability!)



Revision 917 - Directory Listing
Modified Tue Jan 2 02:46:53 2007 UTC (10 years, 9 months ago) by gross
some EsysXML input files. rebuild still fails for these files

Revision 914 - Directory Listing
Modified Thu Dec 14 04:38:18 2006 UTC (10 years, 10 months ago) by gross
access to the number of samples added

Revision 912 - Directory Listing
Modified Wed Dec 6 03:29:49 2006 UTC (10 years, 10 months ago) by gross
modellib.WriteVTK has been rewritten. Instead of only three data objects scalar,
vector, tensor it takes now up to 20 data objects data0 ... data19 and writes it into a 
single VTK file. There is also the possibilty to define individiual name tags name0,..., name19.
If no name is given the corresponding attribute name of the Link target is used. 
This simplifies the usage and increases efficiency.




Revision 908 - Directory Listing
Modified Thu Nov 23 06:39:39 2006 UTC (10 years, 10 months ago) by gross
some fixes

Revision 906 - Directory Listing
Modified Tue Nov 21 05:34:15 2006 UTC (10 years, 10 months ago) by gross
some minor fixes

Revision 893 - Directory Listing
Modified Wed Nov 8 08:20:19 2006 UTC (10 years, 11 months ago) by gross
small bug fixed

Revision 885 - Directory Listing
Modified Wed Nov 1 09:05:51 2006 UTC (10 years, 11 months ago) by gross
DataSource for modelib added

Revision 881 - Directory Listing
Modified Thu Oct 26 02:54:47 2006 UTC (10 years, 11 months ago) by gross
some small canges to clip function to allow unbounded upper or lower values

Revision 880 - Directory Listing
Modified Wed Oct 25 23:58:16 2006 UTC (10 years, 11 months ago) by gross
Locator accepts list of locations now

Revision 877 - Directory Listing
Modified Wed Oct 25 03:06:58 2006 UTC (10 years, 11 months ago) by gross
backtraking in the saddlepoint problem (not perfect yet)

Revision 876 - Directory Listing
Modified Thu Oct 19 03:50:23 2006 UTC (11 years ago) by ksteube
Added erf (error function) implementation


Revision 875 - Directory Listing
Modified Tue Oct 17 12:42:47 2006 UTC (11 years ago) by elspeth
DataSources added to modelframe/EsysXML, and tests to run_xml.py. Currently does not actually handle data 
sources, 
just references. Functionality is in progress. 

EsysXML format (URI can be a local file reference, or a remote reference such as an ftp site, fileformat 
is currently any string descriptor, such as finleyMesh or gmtdata):
 <Parameter type="DataSource">
                        <Name>
                                uritest
                        </Name>
                        <Value>
                                <DataSource>
                                        <URI>
                                                somelocalfile.txt
                                        </URI>
                                        <FileFormat>
                                                text
                                        </FileFormat>
                                </DataSource>
                        </Value>
                </Parameter>



Revision 874 - Directory Listing
Modified Tue Oct 17 12:06:11 2006 UTC (11 years ago) by elspeth
Changed numarray xml structure slightly, to fit better with the rest of 
the XML. 
Added lists of booleans as a data type in modelframe.
Fixed bug with bools in modelframe.


Revision 873 - Directory Listing
Modified Mon Oct 16 04:07:33 2006 UTC (11 years ago) by gross
uszawa scheme runs with variable viscosity

Revision 871 - Directory Listing
Modified Sat Oct 14 08:25:54 2006 UTC (11 years ago) by elspeth
Numarray support added to modelframe and tests for numarray added to run_xml.
Numarrays will look like this in ESysXML:

A 2 x 3 numarray will look like this:

<Parameter type="NumArray">
                        <Name>
                                numtest
                        </Name>
                        <Value>
                                <ArrayType>
                                        Float64
                                </ArrayType>
                                <Shape>
                                        2 3
                                </Shape>
                                <Data>
                                        1.0 2.0 3.0 3.0 4.0 5.0
                                </Data>
                        </Value>
                </Parameter>

A numarray vector will look like this:

<Parameter type="NumArray">
                        <Name>
                                numtest
                        </Name>
                        <Value>
                                <ArrayType>
                                        Float64
                                </ArrayType>
                                <Shape>
                                        3
                                </Shape>
                                <Data>
                                        3.0 4.0 5.0
                                </Data>
                        </Value>
                </Parameter>




Revision 867 - Directory Listing
Modified Mon Oct 9 06:50:09 2006 UTC (11 years ago) by gross
a class to solving sattle point problems using uszawa scheme (not functional yet)

Revision 865 - Directory Listing
Modified Fri Oct 6 10:02:18 2006 UTC (11 years ago) by gross
some functions for minimizing a function added. there is still some work required but successfully applied in an aplication

Revision 856 - Directory Listing
Modified Tue Sep 26 01:00:36 2006 UTC (11 years ago) by gross
data print shows now the element reference number

Revision 855 - Directory Listing
Modified Fri Sep 22 09:30:06 2006 UTC (11 years ago) by gross
some tests for triangle meshes added

Revision 854 - Directory Listing
Modified Thu Sep 21 05:29:42 2006 UTC (11 years ago) by gross
Some modifications to the binary operations +,-,*/, pow. 
The code is a bit simpler now and more efficient has there is
no reseising required now. the resizing method has been removed as
it is very, very inefficient. Even serial code should be faster now.
It is now forbidden to do an inplace update of scalar data object with an object 
of rank >0 as this is very slow (and does not make much sense). 



Revision 838 - Directory Listing
Modified Tue Sep 5 22:45:55 2006 UTC (11 years, 1 month ago) by gross
drucker prager works now but there is still some work on the stepsize control needed.

Revision 836 - Directory Listing
Modified Mon Sep 4 22:37:25 2006 UTC (11 years, 1 month ago) by gross
new implementation of the tangential operator and a restriction of time step size change added

Revision 829 - Directory Listing
Modified Thu Aug 31 01:31:15 2006 UTC (11 years, 1 month ago) by gross
some changes on the drucker-prager (it does not work yet)

Revision 826 - Directory Listing
Modified Tue Aug 29 09:12:33 2006 UTC (11 years, 1 month ago) by gross
ken and I did not have a good afternoon. our checkin was very buggy. fixed

Revision 824 - Directory Listing
Modified Tue Aug 29 05:22:50 2006 UTC (11 years, 1 month ago) by ksteube
C_GeneralTensorProduct was modifying the function space of the
first arg.  Now creating a shallow copy and using the copy to
avoid this.


Revision 814 - Directory Listing
Modified Wed Aug 23 09:31:10 2006 UTC (11 years, 1 month ago) by gross
small bug in general tensor propduct fixed

Revision 813 - Directory Listing
Modified Mon Aug 21 02:08:47 2006 UTC (11 years, 1 month ago) by ksteube
Tensor products for Data objects are now computed by a C++ method
C_GeneralTensorProduct, which calls C function matrix_matrix_product
to do the actual calculation.

Can perform product with either input transposed in place, meaning
without first computing the transpose in a separate step.


Revision 804 - Directory Listing
Modified Thu Aug 10 01:12:16 2006 UTC (11 years, 2 months ago) by gross
the new function swap_axes + tests added. (It replaces swap).



Revision 801 - Directory Listing
Modified Wed Aug 9 00:49:56 2006 UTC (11 years, 2 months ago) by ksteube
Removed outdated tests that use trace()



Revision 800 - Directory Listing
Modified Tue Aug 8 11:23:18 2006 UTC (11 years, 2 months ago) by gross
new function _swap. Python wrapper + testing is still missing.



Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (11 years, 2 months ago) by gross
Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.



Revision 797 - Directory Listing
Modified Thu Aug 3 02:03:18 2006 UTC (11 years, 2 months ago) by gross
function added to manually free unused memory in the memory manager

Revision 795 - Directory Listing
Modified Mon Jul 31 01:23:58 2006 UTC (11 years, 2 months ago) by ksteube
Fixed typo in method name


Revision 791 - Directory Listing
Modified Thu Jul 27 00:37:57 2006 UTC (11 years, 2 months ago) by bcumming
updated calls to matrixmult to the new version matrix_mult


Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (11 years, 2 months ago) by bcumming
changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.  



Revision 789 - Directory Listing
Modified Wed Jul 26 05:41:11 2006 UTC (11 years, 2 months ago) by dhawcroft
Inserted PASO_MPI macro in Data.h to match source file

Revision 785 - Directory Listing
Modified Tue Jul 25 03:48:10 2006 UTC (11 years, 2 months ago) by gross
some new functions around tensor product added.

Revision 783 - Directory Listing
Modified Tue Jul 18 01:32:50 2006 UTC (11 years, 3 months ago) by gross
coordinates, element size and normals returned by corresponding
FunctionSpace mesthods are now protected against updates. So 
+=, -=, *=, /=, setTaggedValue, fillFromNumArray will through an
excpetion.

The FunctionSpace class does nut buffer the oordinates, element size and
normals yet.



Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (11 years, 3 months ago) by bcumming
Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.  


Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (11 years, 3 months ago) by woo409
+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows



Revision 777 - Directory Listing
Modified Wed Jul 12 08:54:45 2006 UTC (11 years, 3 months ago) by gross
integration with persistent jacobeans is running now

Revision 775 - Directory Listing
Modified Mon Jul 10 04:00:08 2006 UTC (11 years, 3 months ago) by ksteube
Modified the following python methods in escript/py_src/util.py to
call faster C++ methods:
	escript_trace
	escript_transpose
	escript_symmetric
	escript_nonsymmetric


Revision 773 - Directory Listing
Modified Fri Jul 7 10:10:00 2006 UTC (11 years, 3 months ago) by gross
assemblage tests added

Revision 772 - Directory Listing
Modified Fri Jul 7 05:47:28 2006 UTC (11 years, 3 months ago) by gross
the check for inhomogenous constraint has been modified so ot does nor
require a tolerance which is a bit risky.


Revision 767 - Directory Listing
Modified Fri Jun 30 07:29:08 2006 UTC (11 years, 3 months ago) by gross
new FunctionSpace method setTags added

Revision 765 - Directory Listing
Modified Fri Jun 30 06:37:11 2006 UTC (11 years, 3 months ago) by gross
The test for the contact normal has been modified to take in cosideration the fact that the normal is unique up to the factor +/-1. 
Now the test checks the kllength of the normal for 1 and the angle to the reference normal.



Revision 758 - Directory Listing
Modified Mon Jun 26 13:52:42 2006 UTC (11 years, 3 months ago) by woo409
+ Added PASO_MPI conditional compilation guard to prevent inclusion of mpi.h when not using mpi.
Trunk now compiles and runs on both win32 and linux.

Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (11 years, 3 months ago) by woo409
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)


Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (11 years, 3 months ago) by bcumming
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.


Revision 728 - Directory Listing
Modified Mon May 15 02:01:18 2006 UTC (11 years, 5 months ago) by gross
modelframe test examples work now

Revision 727 - Directory Listing
Modified Fri May 12 06:31:06 2006 UTC (11 years, 5 months ago) by gross
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.



Revision 720 - Directory Listing
Modified Thu Apr 27 10:16:05 2006 UTC (11 years, 5 months ago) by gross
formatting errors in epydoc tags fixed

Revision 713 - Directory Listing
Modified Thu Apr 27 05:03:44 2006 UTC (11 years, 5 months ago) by gross
relative error tests have been introduced into a few more of the unit test.

Revision 711 - Directory Listing
Modified Wed Apr 26 22:39:51 2006 UTC (11 years, 5 months ago) by gross
tests pass now on gcc: some tests did not take round-off errors into consideration

Revision 710 - Directory Listing
Modified Wed Apr 26 22:22:16 2006 UTC (11 years, 5 months ago) by gross
"scons dodebug=no all_tests" runs now. 

Some of the tests could only pass under dodebug=yes as they checked for
exceptions from asserts. The tests are switched off now if DOASSERT is
not set.



Revision 709 - Directory Listing
Modified Wed Apr 26 06:35:36 2006 UTC (11 years, 5 months ago) by gross
fixes to get scons py_tests going: mainly fixes in the pathes

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (11 years, 6 months ago) by gross
latex build documentation is working now

Revision 706 - Directory Listing
Modified Sat Apr 8 16:13:02 2006 UTC (11 years, 6 months ago) by gross
python tests compile and run but there is still a problem with dependencies'


Revision 705 - Directory Listing
Modified Fri Apr 7 17:57:37 2006 UTC (11 years, 6 months ago) by gross
python tests are allmost working

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (11 years, 6 months ago) by gross
A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.



Revision 699 - Directory Listing
Modified Fri Mar 31 06:27:56 2006 UTC (11 years, 6 months ago) by gross
now float**Data is running

Revision 698 - Directory Listing
Modified Fri Mar 31 04:52:55 2006 UTC (11 years, 6 months ago) by gross
test with tagged data pass now

Revision 697 - Directory Listing
Modified Fri Mar 31 04:48:56 2006 UTC (11 years, 6 months ago) by gross
bug with tagged data fixed

Revision 695 - Directory Listing
Modified Thu Mar 30 12:44:11 2006 UTC (11 years, 6 months ago) by gross
obsolet tests removed

Revision 693 - Directory Listing
Modified Thu Mar 30 08:34:08 2006 UTC (11 years, 6 months ago) by gross
DataVariable removed. it is not used.

Revision 690 - Directory Listing
Modified Tue Mar 28 07:18:51 2006 UTC (11 years, 6 months ago) by robwdcock
+ Added basic_py_tests target which will run the basic set of python tests. The list of python tests was taken from autoscons


Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (11 years, 6 months ago) by robwdcock
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 657 - Directory Listing
Modified Fri Mar 24 08:28:15 2006 UTC (11 years, 6 months ago) by gross
some typos fixed

Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (11 years, 6 months ago) by elspeth
More copyright info added.


Revision 637 - Directory Listing
Modified Thu Mar 23 10:55:31 2006 UTC (11 years, 6 months ago) by gross
more copyright statements added

Revision 629 - Directory Listing
Modified Thu Mar 23 02:41:25 2006 UTC (11 years, 6 months ago) by elspeth
Copyright information added.


Revision 621 - Directory Listing
Modified Wed Mar 22 07:44:18 2006 UTC (11 years, 6 months ago) by gross
bugs in test fixed

Revision 615 - Directory Listing
Modified Wed Mar 22 02:12:00 2006 UTC (11 years, 6 months ago) by elspeth
More copyright information.


Revision 614 - Directory Listing
Modified Wed Mar 22 01:37:07 2006 UTC (11 years, 6 months ago) by elspeth
Corrected spelling of 'license' in url so that the link actually points to the license.


Revision 613 - Directory Listing
Modified Wed Mar 22 01:12:32 2006 UTC (11 years, 6 months ago) by elspeth
More copyright information inserted.


Revision 612 - Directory Listing
Modified Tue Mar 21 23:54:39 2006 UTC (11 years, 6 months ago) by gross
strange problem with import numarray.linear_algebra fixed

Revision 609 - Directory Listing
Modified Tue Mar 21 09:46:39 2006 UTC (11 years, 7 months ago) by elspeth
Updated copyright and licence notices.


Revision 608 - Directory Listing
Modified Tue Mar 21 09:46:06 2006 UTC (11 years, 7 months ago) by elspeth
moved "import numarray.linear_algebra" to function that uses it, in case it is not installed


Revision 602 - Directory Listing
Modified Fri Mar 17 06:57:46 2006 UTC (11 years, 7 months ago) by gross
more work on pyvisi integration

Revision 596 - Directory Listing
Modified Wed Mar 15 22:41:23 2006 UTC (11 years, 7 months ago) by gross
some work on AdvectivePDE for the scalar case

Revision 595 - Directory Listing
Modified Tue Mar 14 23:52:45 2006 UTC (11 years, 7 months ago) by gross
test_utilOnFinley fixed (did run the tests that still fail)

Revision 594 - Directory Listing
Modified Tue Mar 14 23:36:08 2006 UTC (11 years, 7 months ago) by gross
print message removed

Revision 588 - Directory Listing
Modified Fri Mar 10 04:45:04 2006 UTC (11 years, 7 months ago) by gross
1D and 3D tests for eigenvalues_and_eigenvector added.

Revision 587 - Directory Listing
Modified Fri Mar 10 02:26:50 2006 UTC (11 years, 7 months ago) by gross
eigenvalues_and_eigenvector fucntion added. test for 2D problem is added and is passed.

Revision 585 - Directory Listing
Modified Thu Mar 9 23:47:42 2006 UTC (11 years, 7 months ago) by gross
problem with eigenvalue of zero matrix fixed (thanks Dr Hale)

Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (11 years, 7 months ago) by gross
eigenvalues: compiles and passes tests on altix now

Revision 583 - Directory Listing
Modified Wed Mar 8 08:15:34 2006 UTC (11 years, 7 months ago) by gross
_eigenvalues_and_eigenvector method added of data object. the algorithm has been tested on floats in python but not on data objects.

Revision 580 - Directory Listing
Modified Wed Mar 8 05:45:51 2006 UTC (11 years, 7 months ago) by gross
faster version of the local eigenvalue calculation

Revision 577 - Directory Listing
Modified Fri Mar 3 08:32:16 2006 UTC (11 years, 7 months ago) by gross
installation of new inc file

Revision 576 - Directory Listing
Modified Fri Mar 3 08:28:42 2006 UTC (11 years, 7 months ago) by gross
some steps towards eigenvalue and eigenvector calculation

Revision 574 - Directory Listing
Modified Thu Mar 2 06:31:24 2006 UTC (11 years, 7 months ago) by gross
some modifications on eigenvalues to make it a bit more robust.

Revision 571 - Directory Listing
Modified Tue Feb 28 06:53:17 2006 UTC (11 years, 7 months ago) by jgs
modify whereZero etc methods to also accept a tolerance parameter

Revision 570 - Directory Listing
Modified Tue Feb 28 06:51:25 2006 UTC (11 years, 7 months ago) by jgs
extend these tests to test DataTagged objecrs also

Revision 564 - Directory Listing
Modified Thu Feb 23 05:22:31 2006 UTC (11 years, 7 months ago) by jgs
extend testing to include DataTagged objects with no
tags, only default values


Revision 563 - Directory Listing
Modified Thu Feb 23 05:09:47 2006 UTC (11 years, 7 months ago) by jgs
extend operator tests to include DataTagged and DataExpanded


Revision 562 - Directory Listing
Modified Thu Feb 23 05:03:16 2006 UTC (11 years, 7 months ago) by jgs
further fix for DataTAgged::dp_algorithm, was not working for DataTagged objects with 0 tags

Revision 561 - Directory Listing
Modified Thu Feb 23 03:49:50 2006 UTC (11 years, 7 months ago) by jgs
minor reformatting


Revision 560 - Directory Listing
Modified Thu Feb 23 01:58:35 2006 UTC (11 years, 7 months ago) by jgs
reinstate testing of DataTagged object unary ops


Revision 559 - Directory Listing
Modified Thu Feb 23 01:43:44 2006 UTC (11 years, 7 months ago) by jgs
reimplement dp_algorithm for DataTagged, existing
implementation was complete rubbish
(ich bin so beschämt!)


Revision 557 - Directory Listing
Modified Wed Feb 22 05:11:56 2006 UTC (11 years, 7 months ago) by jgs
add test case for case where binaryOp combines a DataTagged and a scalar

Revision 556 - Directory Listing
Modified Wed Feb 22 04:45:15 2006 UTC (11 years, 7 months ago) by jgs
reinstate testing using DataTagged objects


Revision 555 - Directory Listing
Modified Wed Feb 22 04:44:10 2006 UTC (11 years, 7 months ago) by jgs
fixed binaryOp for combination of DataTagged and scalar values.
calculation of default value where RHS was a scalar was not yet
implemented


Revision 554 - Directory Listing
Modified Wed Feb 22 04:02:54 2006 UTC (11 years, 7 months ago) by gross
tests for tagged data fixed. test failing on maxval with segmenation fault (peinlich, peinlich)

Revision 550 - Directory Listing
Modified Wed Feb 22 02:14:38 2006 UTC (11 years, 7 months ago) by gross
more tests on slicing

Revision 549 - Directory Listing
Modified Wed Feb 22 00:45:48 2006 UTC (11 years, 7 months ago) by jgs
extend testing of DataTagged setSlice to include case where
source and target have mismatched tag sets


Revision 548 - Directory Listing
Modified Tue Feb 21 23:52:41 2006 UTC (11 years, 7 months ago) by jgs
modify tests for binary operations and setSlice to ensure situations where two DataTaggeds with mismatched tag sets are tested correctly

Revision 547 - Directory Listing
Modified Tue Feb 21 06:10:54 2006 UTC (11 years, 7 months ago) by gross
solution and reduced solution can have reference numbers now!

Revision 546 - Directory Listing
Modified Tue Feb 21 01:59:07 2006 UTC (11 years, 7 months ago) by jgs
reinstate testing of DataTagged objects


Revision 545 - Directory Listing
Modified Tue Feb 21 01:24:05 2006 UTC (11 years, 7 months ago) by jgs
reinstate testing using DataTagged values


Revision 544 - Directory Listing
Modified Tue Feb 21 01:23:23 2006 UTC (11 years, 7 months ago) by jgs
minor comment fixes


Revision 543 - Directory Listing
Modified Tue Feb 21 01:18:38 2006 UTC (11 years, 7 months ago) by jgs
fix BinaryOp for DataTagged values - existing implementation was adding
tags from RHS to LHS using RHS's default value - should have been using
LHS's default value! fixed now


Revision 542 - Directory Listing
Modified Mon Feb 20 06:53:12 2006 UTC (11 years, 7 months ago) by jgs
reinstate sliceSetting testing of DataTagged


Revision 541 - Directory Listing
Modified Mon Feb 20 06:50:39 2006 UTC (11 years, 7 months ago) by jgs
ensure src and dest objects have matching tag sets in setSlice
by adding tags present in src but not in dest to dest using
dest's default value before doing actual slicing


Revision 540 - Directory Listing
Modified Mon Feb 20 06:05:32 2006 UTC (11 years, 7 months ago) by jgs
reinstate sliceGetting testing for DataTagged objects


Revision 539 - Directory Listing
Modified Mon Feb 20 04:12:51 2006 UTC (11 years, 7 months ago) by jgs
add a test case for tag() method


Revision 538 - Directory Listing
Modified Mon Feb 20 03:43:25 2006 UTC (11 years, 7 months ago) by jgs
minor formatting changes


Revision 537 - Directory Listing
Modified Mon Feb 20 02:00:18 2006 UTC (11 years, 7 months ago) by jgs
refine/extend tests for slicing, particularly those for DataTagged


Revision 536 - Directory Listing
Modified Fri Feb 17 03:20:53 2006 UTC (11 years, 8 months ago) by gross
symmetric and nonsymmetric part functions added

Revision 535 - Directory Listing
Modified Fri Feb 17 02:27:06 2006 UTC (11 years, 8 months ago) by jgs
minor comment changes


Revision 534 - Directory Listing
Modified Fri Feb 17 01:03:53 2006 UTC (11 years, 8 months ago) by jgs
finish testing of DataTagged::setSlice


Revision 533 - Directory Listing
Modified Thu Feb 16 06:49:59 2006 UTC (11 years, 8 months ago) by jgs
testing setSlice with rank1 and rank 3 values and multiple tags


Revision 531 - Directory Listing
Modified Wed Feb 15 08:11:10 2006 UTC (11 years, 8 months ago) by gross
a new version of lumping implemented (does not need a stiffness matrix)

Revision 530 - Directory Listing
Modified Wed Feb 15 07:11:00 2006 UTC (11 years, 8 months ago) by gross
eigenvalues is working now

Revision 529 - Directory Listing
Modified Wed Feb 15 03:58:50 2006 UTC (11 years, 8 months ago) by gross
small bugs in eigenvalues function fixed. 3x3 on data still given wrong results

Revision 528 - Directory Listing
Modified Wed Feb 15 02:20:33 2006 UTC (11 years, 8 months ago) by gross
local eigenvalues added (not tested yet)

Revision 527 - Directory Listing
Modified Wed Feb 15 01:25:57 2006 UTC (11 years, 8 months ago) by jgs
extend setSlice testing to include DataTagged with default values


Revision 525 - Directory Listing
Modified Tue Feb 14 06:56:13 2006 UTC (11 years, 8 months ago) by gross
rob's strange NoPDE class added

Revision 524 - Directory Listing
Modified Tue Feb 14 05:55:46 2006 UTC (11 years, 8 months ago) by jgs
more testing of setSlice


Revision 520 - Directory Listing
Modified Tue Feb 14 05:45:11 2006 UTC (11 years, 8 months ago) by gross
obsolet

Revision 519 - Directory Listing
Modified Tue Feb 14 05:30:50 2006 UTC (11 years, 8 months ago) by jgs
fix comments for setSlice - were totally misleading!


Revision 518 - Directory Listing
Modified Tue Feb 14 05:18:09 2006 UTC (11 years, 8 months ago) by jgs
add some basic testing for DataTagged::setSlice


Revision 517 - Directory Listing
Modified Tue Feb 14 02:25:02 2006 UTC (11 years, 8 months ago) by gross
tests for __getitem__ added

Revision 516 - Directory Listing
Modified Tue Feb 14 01:53:58 2006 UTC (11 years, 8 months ago) by jgs
comprehensive testing of DataTagged::getSlice completed


Revision 515 - Directory Listing
Modified Mon Feb 13 05:59:51 2006 UTC (11 years, 8 months ago) by jgs
split slicing testing into getSlice and setSlice tests
add testing for DataTagged objects with one tagged value


Revision 514 - Directory Listing
Modified Mon Feb 13 04:47:47 2006 UTC (11 years, 8 months ago) by jgs
add testing of slicing methods


Revision 513 - Directory Listing
Modified Mon Feb 13 04:46:51 2006 UTC (11 years, 8 months ago) by jgs
comment and formatting changes


Revision 511 - Directory Listing
Modified Fri Feb 10 05:39:18 2006 UTC (11 years, 8 months ago) by jgs
extend basic testing of Data objects containing DataTagged objects

Revision 510 - Directory Listing
Modified Fri Feb 10 04:00:50 2006 UTC (11 years, 8 months ago) by jgs
add tests for getSampleData

Revision 509 - Directory Listing
Modified Fri Feb 10 03:24:44 2006 UTC (11 years, 8 months ago) by jgs
minor comment changes


Revision 508 - Directory Listing
Modified Fri Feb 10 01:41:55 2006 UTC (11 years, 8 months ago) by jgs
comprehensive testing of reshapeDataPoint method

Revision 507 - Directory Listing
Modified Thu Feb 9 06:13:07 2006 UTC (11 years, 8 months ago) by jgs
minor comment changes


Revision 506 - Directory Listing
Modified Thu Feb 9 06:06:02 2006 UTC (11 years, 8 months ago) by jgs
extend testing for binary and unary operations
and add comprehensive testing for method getSampleDataByTag


Revision 504 - Directory Listing
Modified Wed Feb 8 05:51:27 2006 UTC (11 years, 8 months ago) by jgs
initial testing of operations involving DataTagged objects


Revision 503 - Directory Listing
Modified Wed Feb 8 04:25:40 2006 UTC (11 years, 8 months ago) by jgs
add test for copy constructors


Revision 502 - Directory Listing
Modified Wed Feb 8 03:57:20 2006 UTC (11 years, 8 months ago) by jgs
add test for setTaggedValue


Revision 501 - Directory Listing
Modified Wed Feb 8 03:37:20 2006 UTC (11 years, 8 months ago) by jgs
add extensive testing of addTaggedValue

Revision 500 - Directory Listing
Modified Tue Feb 7 05:19:07 2006 UTC (11 years, 8 months ago) by jgs
fix a reference indicator


Revision 499 - Directory Listing
Modified Tue Feb 7 04:40:44 2006 UTC (11 years, 8 months ago) by jgs
add comprehensive testing for DataTagged with (1) default value only, (2) one tag value and (3) three tag values

Revision 497 - Directory Listing
Modified Tue Feb 7 01:28:01 2006 UTC (11 years, 8 months ago) by jgs
extend testing of default DataTagged object


Revision 496 - Directory Listing
Modified Tue Feb 7 01:27:14 2006 UTC (11 years, 8 months ago) by jgs
minor fix to DataTagged::getTagNumber
changes to comments and formatting
inline two methods


Revision 493 - Directory Listing
Modified Fri Feb 3 02:18:45 2006 UTC (11 years, 8 months ago) by gross
transpose added (just for me)

Revision 492 - Directory Listing
Modified Fri Feb 3 02:07:24 2006 UTC (11 years, 8 months ago) by gross
transpose function added

Revision 484 - Directory Listing
Modified Thu Feb 2 02:12:08 2006 UTC (11 years, 8 months ago) by jgs
add remainder of includes to SConscript includes install

Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (11 years, 8 months ago) by jgs
add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)


Revision 480 - Directory Listing
Modified Wed Feb 1 05:15:12 2006 UTC (11 years, 8 months ago) by jgs
rationalise #includes and forward declarations


Revision 478 - Directory Listing
Modified Tue Jan 31 02:21:49 2006 UTC (11 years, 8 months ago) by jgs
rationalise #includes


Revision 477 - Directory Listing
Modified Mon Jan 30 07:20:20 2006 UTC (11 years, 8 months ago) by jgs
rationalise #includes


Revision 474 - Directory Listing
Modified Mon Jan 30 04:23:44 2006 UTC (11 years, 8 months ago) by jgs
restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly


Revision 468 - Directory Listing
Modified Wed Jan 25 06:50:39 2006 UTC (11 years, 8 months ago) by jgs
reorganised esysUtils to remove inc directory

Revision 462 - Directory Listing
Modified Wed Jan 25 00:02:03 2006 UTC (11 years, 8 months ago) by gross
traceback added

Revision 458 - Directory Listing
Modified Tue Jan 24 06:20:50 2006 UTC (11 years, 8 months ago) by gross
None options are excepted now. makes life a bit easier

Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (11 years, 8 months ago) by jgs
fix installation to directories specified by pyinstall and libinstall


Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (11 years, 8 months ago) by jgs
minor comment and formatting changes


Revision 451 - Directory Listing
Modified Mon Jan 23 23:45:43 2006 UTC (11 years, 8 months ago) by gross
failing rin is catched now.

Revision 450 - Directory Listing
Modified Mon Jan 23 05:04:45 2006 UTC (11 years, 8 months ago) by jgs
remove old make based build system


Revision 443 - Directory Listing
Modified Fri Jan 20 06:22:38 2006 UTC (11 years, 8 months ago) by gross
L2 function added

Revision 442 - Directory Listing
Modified Fri Jan 20 04:39:43 2006 UTC (11 years, 8 months ago) by gross
kronecker (and relatives) take now a FunctionSpace as argument and return a Data object in tthis functionspace

Revision 441 - Directory Listing
Modified Fri Jan 20 03:40:39 2006 UTC (11 years, 8 months ago) by gross
and finally test for the divergence operator added. div() has been modified to take Symbol arguments

Revision 440 - Directory Listing
Modified Fri Jan 20 02:15:48 2006 UTC (11 years, 8 months ago) by gross
tests for normals at boundary and contact region added

Revision 439 - Directory Listing
Modified Fri Jan 20 01:46:22 2006 UTC (11 years, 8 months ago) by gross
tests for interpolation added

Revision 438 - Directory Listing
Modified Fri Jan 20 00:39:00 2006 UTC (11 years, 8 months ago) by gross
test for the grad fucntion added

Revision 437 - Directory Listing
Modified Fri Jan 20 00:16:58 2006 UTC (11 years, 8 months ago) by gross
comprehensive testing for integrate function added. tests for grad will be added in the next check in. GradTest is obsolete now.

Revision 436 - Directory Listing
Modified Thu Jan 19 22:36:36 2006 UTC (11 years, 9 months ago) by gross
bug fixed in integrate method. don;t use a[i,j]=.. to set a value in the numeric::array a but 
a[make_tuple(i,j)].



Revision 435 - Directory Listing
Modified Thu Jan 19 03:57:30 2006 UTC (11 years, 9 months ago) by gross
minor change

Revision 434 - Directory Listing
Modified Thu Jan 19 01:53:16 2006 UTC (11 years, 9 months ago) by gross
prints out the benchmark been started

Revision 433 - Directory Listing
Modified Tue Jan 17 23:54:38 2006 UTC (11 years, 9 months ago) by gross
new function inverse and tests added

Revision 431 - Directory Listing
Modified Fri Jan 13 05:07:10 2006 UTC (11 years, 9 months ago) by gross
new implementation of ILU0

Revision 430 - Directory Listing
Modified Wed Jan 11 06:40:50 2006 UTC (11 years, 9 months ago) by gross
ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.

Revision 429 - Directory Listing
Modified Wed Jan 11 05:53:40 2006 UTC (11 years, 9 months ago) by gross
new implementation and testing for trace function

Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (11 years, 9 months ago) by gross
The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings. 




Revision 414 - Directory Listing
Modified Wed Jan 4 05:29:05 2006 UTC (11 years, 9 months ago) by gross
bug in CPP substitute fixed.

Revision 413 - Directory Listing
Modified Tue Jan 3 08:27:19 2006 UTC (11 years, 9 months ago) by gross
inner returns right functionspace now

Revision 410 - Directory Listing
Modified Fri Dec 23 01:27:38 2005 UTC (11 years, 9 months ago) by gross
bug fixed

Revision 409 - Directory Listing
Modified Fri Dec 23 01:13:41 2005 UTC (11 years, 9 months ago) by gross
bug fixed

Revision 400 - Directory Listing
Modified Wed Dec 21 23:13:39 2005 UTC (11 years, 9 months ago) by gross
Some chnages required for oder numarray versions. mai problem is that
operations on array objects with rank 0 sometimes return float rather
than arrays. This problem seems to be fixed in newer releases.



Revision 397 - Directory Listing
Modified Wed Dec 21 05:11:31 2005 UTC (11 years, 9 months ago) by gross
typo fixed

Revision 396 - Directory Listing
Modified Wed Dec 21 05:08:25 2005 UTC (11 years, 9 months ago) by gross
tests for clip, maximum, minimum added

Revision 395 - Directory Listing
Modified Wed Dec 21 02:41:59 2005 UTC (11 years, 9 months ago) by gross
test is splitted to reduce memory demand during compilation

Revision 393 - Directory Listing
Modified Tue Dec 20 05:40:43 2005 UTC (11 years, 10 months ago) by gross
set number of threads works now

Revision 392 - Directory Listing
Modified Tue Dec 20 05:39:30 2005 UTC (11 years, 10 months ago) by gross
Utils added for compilation

Revision 391 - Directory Listing
Modified Tue Dec 20 05:36:50 2005 UTC (11 years, 10 months ago) by gross
intreface for setting the number of threads from python

Revision 390 - Directory Listing
Modified Tue Dec 20 03:39:24 2005 UTC (11 years, 10 months ago) by gross
os.loginname does not work under pbs. the exception is caught now

Revision 387 - Directory Listing
Modified Tue Dec 20 00:37:20 2005 UTC (11 years, 10 months ago) by gross
scale allows now to switch on and off certain problems

Revision 386 - Directory Listing
Modified Tue Dec 20 00:31:52 2005 UTC (11 years, 10 months ago) by gross
the number of problems to run is now the less or equal then len(scale) and less or equal number of problems. This allows easier control

Revision 385 - Directory Listing
Modified Mon Dec 19 06:12:14 2005 UTC (11 years, 10 months ago) by gross
filerrs added

Revision 379 - Directory Listing
Modified Mon Dec 19 01:10:34 2005 UTC (11 years, 10 months ago) by gross
a filetr added

Revision 378 - Directory Listing
Modified Fri Dec 16 09:02:28 2005 UTC (11 years, 10 months ago) by gross
clip added

Revision 376 - Directory Listing
Modified Fri Dec 16 01:49:18 2005 UTC (11 years, 10 months ago) by jgs
removed redundant test

Revision 375 - Directory Listing
Modified Fri Dec 16 01:44:11 2005 UTC (11 years, 10 months ago) by jgs
fix method names to match new scheme

Revision 374 - Directory Listing
Modified Fri Dec 16 01:35:07 2005 UTC (11 years, 10 months ago) by jgs
fix names of log/ln functions to match new scheme


Revision 373 - Directory Listing
Modified Fri Dec 16 01:31:06 2005 UTC (11 years, 10 months ago) by jgs
modified number of data points in mesh to allow
testing with Bruce Function objects


Revision 364 - Directory Listing
Modified Thu Dec 15 04:38:28 2005 UTC (11 years, 10 months ago) by gross
a simple environment to run benchmarks (mainly for testing solvers)

Revision 362 - Directory Listing
Modified Thu Dec 15 02:07:55 2005 UTC (11 years, 10 months ago) by jgs
removed unit-test runner scripts as unit-tests now run from scons

Revision 360 - Directory Listing
Modified Thu Dec 15 01:52:16 2005 UTC (11 years, 10 months ago) by jgs
add target to run all unit tests, the build will fail
for this target if any unit test fails


Revision 358 - Directory Listing
Modified Wed Dec 14 07:55:19 2005 UTC (11 years, 10 months ago) by cochrane
Updated link to epydoc generated documentation on the web site.


Revision 355 - Directory Listing
Modified Wed Dec 14 05:05:31 2005 UTC (11 years, 10 months ago) by jgs
add explicit target for building of unit tests


Revision 353 - Directory Listing
Modified Wed Dec 14 04:13:59 2005 UTC (11 years, 10 months ago) by gross
bug fixed (thanks to Estelle)

Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (11 years, 10 months ago) by jgs
turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!


Revision 351 - Directory Listing
Modified Tue Dec 13 09:12:15 2005 UTC (11 years, 10 months ago) by gross
time integration manger added

Revision 350 - Directory Listing
Modified Tue Dec 13 09:11:52 2005 UTC (11 years, 10 months ago) by gross
test for time integration manger added

Revision 349 - Directory Listing
Modified Tue Dec 13 07:35:31 2005 UTC (11 years, 10 months ago) by gross
bug fixed

Revision 348 - Directory Listing
Modified Tue Dec 13 07:33:10 2005 UTC (11 years, 10 months ago) by gross
advection diffusion class added

Revision 345 - Directory Listing
Modified Tue Dec 13 05:23:45 2005 UTC (11 years, 10 months ago) by gross
advection diffusion class added

Revision 342 - Directory Listing
Modified Tue Dec 13 01:50:42 2005 UTC (11 years, 10 months ago) by jgs
minor formatting fix


Revision 341 - Directory Listing
Modified Mon Dec 12 05:26:10 2005 UTC (11 years, 10 months ago) by gross
some fixes to make the test to run for older numarray versions

Revision 340 - Directory Listing
Modified Mon Dec 12 05:10:45 2005 UTC (11 years, 10 months ago) by jgs
pass in pyinstall value from top-level scons script and add
correct suffix in module level scons scipr


Revision 329 - Directory Listing
Modified Wed Dec 7 04:42:43 2005 UTC (11 years, 10 months ago) by gross
fixing the problem that older versions of numarray don't have a sign method

Revision 328 - Directory Listing
Modified Wed Dec 7 04:41:53 2005 UTC (11 years, 10 months ago) by gross
start to remove slicing opertions

Revision 325 - Directory Listing
Modified Wed Dec 7 02:08:17 2005 UTC (11 years, 10 months ago) by jgs
now determine hostname via socket.gethostname() as HOSTNAME
environment variable is apparently not set on all platforms


Revision 324 - Directory Listing
Modified Wed Dec 7 01:10:36 2005 UTC (11 years, 10 months ago) by jgs
add symlinks to include files - previously added by hand as cvs couldn't
handle them


Revision 322 - Directory Listing
Modified Tue Dec 6 04:53:30 2005 UTC (11 years, 10 months ago) by jgs
add modelframe.py to list of python modules to install


Revision 320 - Directory Listing
Modified Tue Dec 6 04:35:27 2005 UTC (11 years, 10 months ago) by svn
unit tests now run ok

Revision 319 - Directory Listing
Modified Tue Dec 6 04:25:37 2005 UTC (11 years, 10 months ago) by jgs
temporary unit tests scripts

Revision 316 - Directory Listing
Modified Tue Dec 6 01:16:05 2005 UTC (11 years, 10 months ago) by jgs
fix this test


Revision 315 - Directory Listing
Modified Tue Dec 6 01:13:57 2005 UTC (11 years, 10 months ago) by jgs
change method calls to match new names for Data methods


Revision 314 - Directory Listing
Modified Tue Dec 6 00:55:22 2005 UTC (11 years, 10 months ago) by jgs
rename method calls to match new Data boost interface names


Revision 313 - Directory Listing
Modified Mon Dec 5 07:01:36 2005 UTC (11 years, 10 months ago) by gross
and a bit more tests

Revision 312 - Directory Listing
Modified Mon Dec 5 07:01:00 2005 UTC (11 years, 10 months ago) by gross
reimplementation of maxval,minval and length. small bug in generalTensorProduct fixed

Revision 311 - Directory Listing
Modified Mon Dec 5 02:59:54 2005 UTC (11 years, 10 months ago) by jgs
remove references to ln and length methods which have been removed
from class Data


Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (11 years, 10 months ago) by jgs
now load default options - by default!


Revision 304 - Directory Listing
Modified Fri Dec 2 06:04:06 2005 UTC (11 years, 10 months ago) by gross
changes in util.py worked in

Revision 293 - Directory Listing
Modified Fri Dec 2 03:46:39 2005 UTC (11 years, 10 months ago) by gross
updated

Revision 292 - Directory Listing
Modified Fri Dec 2 03:11:04 2005 UTC (11 years, 10 months ago) by gross
complete test set for generalTensorProduct and friends added.

Revision 291 - Directory Listing
Modified Fri Dec 2 03:10:06 2005 UTC (11 years, 10 months ago) by gross
just my private test generator

Revision 290 - Directory Listing
Modified Fri Dec 2 03:09:32 2005 UTC (11 years, 10 months ago) by gross
some minor bugs in util.py fixed.

Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (11 years, 10 months ago) by jgs
now automatically build unit tests as required based on dependencies
between unit tests and libraries


Revision 287 - Directory Listing
Modified Thu Dec 1 06:40:51 2005 UTC (11 years, 10 months ago) by gross
more tests added

Revision 286 - Directory Listing
Modified Thu Dec 1 06:40:20 2005 UTC (11 years, 10 months ago) by gross
length method is removed as it is too slow. use length in util.py instead

Revision 285 - Directory Listing
Modified Thu Dec 1 06:40:04 2005 UTC (11 years, 10 months ago) by gross
length method is removed as it is too slow. use length in util.py instead

Revision 283 - Directory Listing
Modified Wed Nov 30 23:35:29 2005 UTC (11 years, 10 months ago) by gross
some stuff

Revision 282 - Directory Listing
Modified Wed Nov 30 09:18:38 2005 UTC (11 years, 10 months ago) by elspeth
Fixed XML duplication in output bug.


Revision 277 - Directory Listing
Modified Wed Nov 30 04:52:39 2005 UTC (11 years, 10 months ago) by jgs
explicitly define dependencies between modules


Revision 269 - Directory Listing
Modified Wed Nov 30 01:59:55 2005 UTC (11 years, 10 months ago) by elspeth
Fixed typos and import problems


Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (11 years, 10 months ago) by jgs
setup scons configuration to make and install python code


Revision 266 - Directory Listing
Modified Wed Nov 30 00:21:51 2005 UTC (11 years, 10 months ago) by elspeth
Added handling for NoneType


Revision 265 - Directory Listing
Modified Tue Nov 29 22:56:08 2005 UTC (11 years, 10 months ago) by elspeth
Minor bugfix - should now actually run simulations


Revision 261 - Directory Listing
Modified Tue Nov 29 07:34:35 2005 UTC (11 years, 10 months ago) by gross
runmodel added

Revision 260 - Directory Listing
Modified Tue Nov 29 07:34:06 2005 UTC (11 years, 10 months ago) by gross
small fix

Revision 252 - Directory Listing
Modified Tue Nov 29 05:58:03 2005 UTC (11 years, 10 months ago) by jgs
pass in platform specific libraries via options files now


Revision 250 - Directory Listing
Modified Tue Nov 29 05:32:57 2005 UTC (11 years, 10 months ago) by gross
initial checkin

Revision 248 - Directory Listing
Modified Tue Nov 29 04:58:23 2005 UTC (11 years, 10 months ago) by jgs
add top level scons config files to allow building
of all unit tests for each module at once


Revision 246 - Directory Listing
Modified Tue Nov 29 04:27:00 2005 UTC (11 years, 10 months ago) by jgs
allow compile options to be loaded from a config
file specified on the command line to scons


Revision 244 - Directory Listing
Modified Tue Nov 29 00:27:10 2005 UTC (11 years, 10 months ago) by jgs
fixed an accidental commit which broke this script


Revision 241 - Directory Listing
Modified Mon Nov 28 06:14:47 2005 UTC (11 years, 10 months ago) by jgs
if usegcc=1 is set on command line, load compiler options
fropm scons/gcc_options.py


Revision 239 - Directory Listing
Modified Mon Nov 28 05:49:32 2005 UTC (11 years, 10 months ago) by jgs
read names of python and boost libraries from config file now


Revision 235 - Directory Listing
Modified Mon Nov 28 04:36:16 2005 UTC (11 years, 10 months ago) by jgs
change scons config files for escript unit tests to read
compiler options from option file now


Revision 224 - Directory Listing
Modified Fri Nov 25 00:33:27 2005 UTC (11 years, 10 months ago) by jgs
implement switching of debug compiler options based on command line flag 'debug'

Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (11 years, 10 months ago) by jgs
pass in cc/cxx settings from config file

Revision 217 - Directory Listing
Modified Thu Nov 24 06:48:50 2005 UTC (11 years, 10 months ago) by jgs
import sys

Revision 216 - Directory Listing
Modified Thu Nov 24 06:35:14 2005 UTC (11 years, 10 months ago) by jgs
first pass at importing compile options from an external file'


Revision 214 - Directory Listing
Modified Thu Nov 24 05:15:26 2005 UTC (11 years, 10 months ago) by jgs
collect all information needed to determine build
configuration (ie: debug/nodebug, host, platform etc)


Revision 196 - Directory Listing
Modified Tue Nov 22 01:48:33 2005 UTC (11 years, 10 months ago) by jgs
first draft scons construct files for remaining escript unit tests


Revision 192 - Directory Listing
Modified Mon Nov 21 04:52:14 2005 UTC (11 years, 10 months ago) by jgs
pass in top level install directory for finley/escript/bruce/paso
libraries when building via top level scons script


Revision 191 - Directory Listing
Modified Mon Nov 21 04:10:12 2005 UTC (11 years, 10 months ago) by jgs
push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files

Revision 190 - Directory Listing
Modified Mon Nov 21 03:27:42 2005 UTC (11 years, 10 months ago) by jgs
pass in value for esysroot and use this to determine include file locations

Revision 188 - Directory Listing
Modified Mon Nov 21 01:20:26 2005 UTC (11 years, 10 months ago) by jgs
explicitly add -fpic option to all compiler options lists
to ensure relocatable code is generated


Revision 184 - Directory Listing
Modified Fri Nov 18 06:14:18 2005 UTC (11 years, 11 months ago) by phornby
Remove unnecessary unary +'s from the numarray.array's because this is broken in some
versions of numarray.



Revision 181 - Directory Listing
Modified Fri Nov 18 04:28:47 2005 UTC (11 years, 11 months ago) by jgs
first draft of config/construct scripts for escript library


Revision 160 - Directory Listing
Modified Thu Nov 10 05:09:25 2005 UTC (11 years, 11 months ago) by jgs
fixed a broken constructor - simply didn't work


Revision 159 - Directory Listing
Modified Thu Nov 10 04:01:43 2005 UTC (11 years, 11 months ago) by matt
Added a more comprehensive data equivalence test based on X coordinates.



Revision 158 - Directory Listing
Modified Thu Nov 10 03:51:03 2005 UTC (11 years, 11 months ago) by matt
Added finley and bruce rectangle and brick Data archive tests.



Revision 157 - Directory Listing
Modified Wed Nov 9 10:01:06 2005 UTC (11 years, 11 months ago) by gross
initial checkin

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (11 years, 11 months ago) by jgs
Copied from: trunk/esys2/escript revision 154
move all directories from trunk/esys2 into trunk and remove esys2


Revision 154 - Directory Listing
Modified Mon Nov 7 05:51:17 2005 UTC (11 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-11-07


Revision 153 - Directory Listing
Modified Tue Oct 25 01:51:20 2005 UTC (11 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-10-25


Revision 152 - Directory Listing
Modified Fri Oct 21 08:32:21 2005 UTC (11 years, 11 months ago) by phornby
Original Path: trunk/esys2/escript
DataConstantTestCase.cpp, DataExpandedTestCase.cpp:

Replace

DataExpanded testData1(FunctionSpace(),....)

with

FunctionSpace tmp_fns;
DataExpanded testData1(tmp_fns,shape,data);

for GCC's sake.




Added some profiling to PoissonSolverTest.py.


Revision 151 - Directory Listing
Modified Thu Sep 22 01:55:00 2005 UTC (12 years ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-09-22


Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-09-15


Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-09-01


Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-08-23


Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
erge of development branch dev-02 back to main trunk on 2005-08-12


Revision 146 - Directory Listing
Modified Fri Jul 29 01:44:29 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
First merge of development branch dev-02 back to main trunk on 2005-07-29


Revision 143 - Directory Listing
Modified Mon Jul 25 05:39:50 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
moved these files to modellib directory


Revision 142 - Directory Listing
Modified Mon Jul 25 05:28:20 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-07-25


Revision 141 - Directory Listing
Modified Mon Jul 25 05:15:41 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
fixed to work with new python source/install directory structure


Revision 137 - Directory Listing
Modified Fri Jul 22 07:07:20 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
removed all references to modellib module


Revision 133 - Directory Listing
Modified Fri Jul 22 06:26:05 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
removing escript/lib/py_src/modellib


Revision 129 - Directory Listing
Modified Fri Jul 22 05:17:51 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
removed references to modellib


Revision 128 - Directory Listing
Modified Fri Jul 22 05:13:08 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
removed modellib code from escript source directory


Revision 126 - Directory Listing
Modified Fri Jul 22 03:53:08 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-07-22


Revision 124 - Directory Listing
Modified Wed Jul 20 06:14:58 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/escript
added ln(data) style wrapper for data.ln() - also added corresponding
implementation of Ln_Symbol class (not sure if this is right though)


Revision 123 - Directory Listing
Modified Fri Jul 8 04:08:13 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-07-08


Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-06-09


Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-05-06


Revision 119 - Directory Listing
Modified Tue Apr 12 04:45:05 2005 UTC (12 years, 6 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 118 - Directory Listing
Modified Tue Apr 12 04:44:55 2005 UTC (12 years, 6 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-04-12


Revision 117 - Directory Listing
Modified Fri Apr 1 05:48:57 2005 UTC (12 years, 6 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 115 - Directory Listing
Modified Fri Mar 4 07:12:47 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 114 - Directory Listing
Modified Fri Mar 4 07:12:37 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-03-04


Revision 113 - Directory Listing
Modified Mon Feb 28 07:06:33 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 106 - Directory Listing
Modified Thu Dec 23 07:20:12 2004 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 105 - Directory Listing
Modified Thu Dec 23 07:20:07 2004 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/escript
commit of dev-01 branch back to main trunk on 2004-12-23


Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 95 - Directory Listing
Modified Wed Oct 27 00:53:16 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
disabled testSubtraction test for now - requires setTaggedValue interface
which takes Data object as argument


Revision 94 - Directory Listing
Modified Wed Oct 27 00:45:54 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 93 - Directory Listing
Modified Wed Oct 27 00:42:03 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
trying to fix cvs permissions wierdness


Revision 92 - Directory Listing
Modified Wed Oct 27 00:36:38 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
readded these


Revision 91 - Directory Listing
Modified Wed Oct 27 00:34:08 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
still trying to fix cvs issue


Revision 90 - Directory Listing
Modified Wed Oct 27 00:31:36 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
removed non-boost version of setTaggedValue - breaks escript.cpp


Revision 89 - Directory Listing
Modified Wed Oct 27 00:30:36 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
fixing cvs issue


Revision 88 - Directory Listing
Modified Wed Oct 27 00:23:36 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
fixed minor syntax error


Revision 84 - Directory Listing
Modified Tue Oct 26 23:51:56 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 83 - Directory Listing
Modified Tue Oct 26 23:51:50 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
added dummy file to ensure CVS keeps this directory in the repository


Revision 82 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
Initial revision


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