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// $Id$ |
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/*============================================================================= |
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****************************************************************************** |
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* * |
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* COPYRIGHT ACcESS 2004 - All Rights Reserved * |
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* * |
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* This software is the property of ACcESS. No part of this code * |
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* may be copied in any form or by any means without the expressed written * |
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* consent of ACcESS. Copying, use or modification of this software * |
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* by any unauthorised person is illegal unless that * |
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* person has a software license agreement with ACcESS. * |
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* * |
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****************************************************************************** |
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******************************************************************************/ |
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#ifndef DATA_H |
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#define DATA_H |
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#include "escript/Data/DataAbstract.h" |
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#include "escript/Data/DataTagged.h" |
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#include "escript/Data/FunctionSpace.h" |
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#include "escript/Data/BinaryOp.h" |
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#include "escript/Data/UnaryOp.h" |
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extern "C" { |
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#include "escript/Data/DataC.h" |
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} |
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#include <iostream> |
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#include <string> |
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#include <memory> |
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#include <algorithm> |
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#include <boost/shared_ptr.hpp> |
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#include <boost/python/object.hpp> |
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#include <boost/python/list.hpp> |
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#include <boost/python/tuple.hpp> |
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#include <boost/python/numeric.hpp> |
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/** |
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\brief |
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Data is essentially a factory class which creates the appropriate Data |
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object for the given construction arguments. It retains control over |
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the object created for the lifetime of the object. |
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The type of Data object referred to may change during the lifetime of |
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the Data object. |
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Description: |
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Data is essentially a factory class which creates the appropriate Data |
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object for the given construction arguments. It retains control over |
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the object created for the lifetime of the object. |
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The type of Data object referred to may change during the lifetime of |
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the Data object. |
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*/ |
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namespace escript { |
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// |
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// Forward declaration for various implimentations of Data. |
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class DataEmpty; |
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class DataConstant; |
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class DataTagged; |
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class DataExpanded; |
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class Data { |
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public: |
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typedef double (*UnaryDFunPtr)(double); |
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typedef double (*BinaryDFunPtr)(double,double); |
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/** |
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Constructors. |
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*/ |
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/** |
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\brief |
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Default constructor. |
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Creates a DataEmpty object. |
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*/ |
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Data(); |
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/** |
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\brief |
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Copy constructor. |
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WARNING: Only performs a shallow copy. |
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*/ |
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Data(const Data& inData); |
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/** |
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\brief |
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Constructor from another Data object. If "what" is different from the |
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function space of inData the inData are tried to be interpolated to what, |
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otherwise a shallow copy of inData is returned. |
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*/ |
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Data(const Data& inData, |
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const FunctionSpace& what); |
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/** |
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\brief |
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Constructor which copies data from a DataArrayView. |
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\param value - Input - Data value for a single point. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the value. Otherwise a more efficient storage |
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mechanism will be used. |
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*/ |
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Data(const DataArrayView& value, |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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/** |
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\brief |
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Constructor which creates a Data from a DataArrayView shape. |
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\param value - Input - Single value applied to all Data. |
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\param dataPointShape - Input - The shape of each data point. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the given value. Otherwise a more efficient storage |
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mechanism will be used. |
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*/ |
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Data(double value, |
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const DataArrayView::ShapeType& dataPointShape=DataArrayView::ShapeType(), |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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/** |
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\brief |
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Constructor which performs a deep copy of a region from another Data object. |
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\param inData - Input - Input Data object. |
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\param region - Input - Region to copy. |
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*/ |
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Data(const Data& inData, |
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const DataArrayView::RegionType& region); |
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/** |
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\brief |
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Constructor which will create Tagged data if expanded is false. |
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No attempt is made to ensure the tag keys match the tag keys |
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within the function space. |
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\param tagKeys - Input - List of tag values. |
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\param values - Input - List of values, one for each tag. |
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\param defaultValue - Input - A default value, used if tag doesn't exist. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the appropriate values. |
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*/ |
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Data(const DataTagged::TagListType& tagKeys, |
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const DataTagged::ValueListType& values, |
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const DataArrayView& defaultValue, |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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/** |
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\brief |
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Constructor which copies data from a python numarray. |
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\param value - Input - Data value for a single point. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the value. Otherwise a more efficient storage |
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mechanism will be used. |
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*/ |
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Data(const boost::python::numeric::array& value, |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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/** |
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\brief |
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Constructor which copies data from any object that can be converted into |
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a python numarray. |
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\param value - Input - Input data. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the value. Otherwise a more efficient storage |
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mechanism will be used. |
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*/ |
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Data(const boost::python::object& value, |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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/** |
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\brief |
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Constructor which creates a DataConstant. |
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Copies data from any object that can be converted |
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into a numarray. All other parameters are copied from other. |
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\param value - Input - Input data. |
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\param other - Input - contains all other parameters. |
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*/ |
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Data(const boost::python::object& value, |
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const Data& other); |
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/** |
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\brief |
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Constructor which creates a DataConstant of "shape" with constant value. |
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*/ |
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Data(double value, |
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const boost::python::tuple& shape=boost::python::make_tuple(), |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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/** |
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\brief |
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Perform a deep copy. |
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*/ |
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void |
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copy(const Data& other); |
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/** |
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Member access methods. |
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*/ |
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/** |
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\brief |
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Return the C wrapper for the Data object. |
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*/ |
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escriptDataC |
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getDataC(); |
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/** |
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\brief |
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Return the C wrapper for the Data object - const version. |
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*/ |
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escriptDataC |
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getDataC() const; |
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/** |
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\brief |
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Write the data as a string. |
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*/ |
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inline |
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std::string |
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toString() const |
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{ |
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return m_data->toString(); |
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} |
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/** |
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\brief |
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Return the DataArrayView of the point data. This essentially contains |
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the shape information for each data point although it also may be used |
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to manipulate the point data. |
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*/ |
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inline |
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const DataArrayView& |
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getPointDataView() const |
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{ |
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return m_data->getPointDataView(); |
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} |
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/** |
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\brief |
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Whatever the current Data type make this into a DataExpanded. |
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*/ |
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void |
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expand(); |
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/** |
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\brief |
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If possible convert this Data to DataTagged. This will only allow |
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Constant data to be converted to tagged. An attempt to convert |
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Expanded data to tagged will throw an exception. |
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*/ |
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void |
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tag(); |
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/** |
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\brief |
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Return true if this Data is expanded. |
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*/ |
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bool |
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isExpanded() const; |
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/** |
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\brief |
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Return true if this Data is tagged. |
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*/ |
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bool |
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isTagged() const; |
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/** |
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\brief |
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Return true if this Data is constant. |
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*/ |
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bool |
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isConstant() const; |
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/** |
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\brief |
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Return true if this Data is empty. |
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*/ |
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bool |
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isEmpty() const; |
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/** |
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\brief |
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Return the function space. |
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*/ |
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inline |
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const FunctionSpace& |
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getFunctionSpace() const |
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{ |
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return m_data->getFunctionSpace(); |
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} |
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/** |
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\brief |
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Return a copy of the function space. |
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*/ |
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const FunctionSpace |
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getCopyOfFunctionSpace() const; |
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/** |
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\brief |
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Return the domain. |
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*/ |
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inline |
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const AbstractDomain& |
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getDomain() const |
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{ |
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return getFunctionSpace().getDomain(); |
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} |
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/** |
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\brief |
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Return a copy of the domain. |
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*/ |
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const AbstractDomain |
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getCopyOfDomain() const; |
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/** |
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\brief |
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Return the rank of the point data. |
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*/ |
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inline |
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int |
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getDataPointRank() const |
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{ |
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return m_data->getPointDataView().getRank(); |
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} |
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/** |
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\brief |
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Return the number of samples. |
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*/ |
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inline |
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int |
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getNumSamples() const |
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{ |
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return m_data->getNumSamples(); |
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} |
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/** |
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\brief |
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Return the number of data points per sample. |
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*/ |
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inline |
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int |
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getNumDataPointsPerSample() const |
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{ |
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return m_data->getNumDPPSample(); |
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} |
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/** |
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\brief |
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Return the sample data for the given sample no. This is not the |
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preferred interface but is provided for use by C code. |
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\param sampleNo - Input - the given sample no. |
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*/ |
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inline |
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DataAbstract::ValueType::value_type* |
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getSampleData(DataAbstract::ValueType::size_type sampleNo) |
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{ |
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return m_data->getSampleData(sampleNo); |
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} |
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jgs |
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/** |
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\brief |
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Return the sample data for the given tag. If an attempt is made to |
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access data that isn't tagged an exception will be thrown. |
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\param tag - Input - the tag key. |
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*/ |
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inline |
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DataAbstract::ValueType::value_type* |
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getSampleDataByTag(int tag) |
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{ |
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return m_data->getSampleDataByTag(tag); |
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} |
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jgs |
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/** |
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\brief |
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Return a view into the data for the data point specified. |
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NOTE: Construction of the DataArrayView is a relatively expensive |
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operation. |
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\param sampleNo - Input - |
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\param dataPointNo - Input - |
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*/ |
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inline |
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DataArrayView |
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getDataPoint(int sampleNo, |
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int dataPointNo) |
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{ |
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return m_data->getDataPoint(sampleNo,dataPointNo); |
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} |
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/** |
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\brief |
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Return a reference to the data point shape. |
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*/ |
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const DataArrayView::ShapeType& |
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getDataPointShape() const; |
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/** |
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\brief |
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Return the data point shape as a tuple of integers. |
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*/ |
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boost::python::tuple |
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getShapeTuple() const; |
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|
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/** |
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\brief |
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Return the size of the data point. It is the product of the |
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data point shape dimensions. |
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*/ |
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int |
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getDataPointSize() const; |
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/** |
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\brief |
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Return the number of doubles stored for this Data. |
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*/ |
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DataArrayView::ValueType::size_type |
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getLength() const; |
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|
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/** |
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\brief |
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Assign the given value to the tag. Implicitly converts this |
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object to type DataTagged. Throws an exception if this object |
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cannot be converted to a DataTagged object. |
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|
\param tagKey - Input - Integer key. |
449 |
|
|
\param value - Input - Value to associate with given key. |
450 |
jgs |
94 |
*/ |
451 |
jgs |
102 |
void |
452 |
|
|
setTaggedValue(int tagKey, |
453 |
|
|
const boost::python::object& value); |
454 |
|
|
|
455 |
|
|
/** |
456 |
|
|
\brief |
457 |
|
|
Assign the given value to the tag. Implicitly converts this |
458 |
|
|
object to type DataTagged. Throws an exception if this object |
459 |
|
|
cannot be converted to a DataTagged object. |
460 |
|
|
\param tagKey - Input - Integer key. |
461 |
|
|
\param value - Input - Value to associate with given key. |
462 |
|
|
Note: removed for now - this version not needed, and breaks escript.cpp |
463 |
|
|
*/ |
464 |
|
|
/* |
465 |
|
|
void |
466 |
|
|
setTaggedValue(int tagKey, |
467 |
|
|
const DataArrayView& value); |
468 |
|
|
*/ |
469 |
|
|
|
470 |
|
|
/** |
471 |
|
|
\brief |
472 |
|
|
Copy other Data object into this Data object where mask is positive. |
473 |
|
|
*/ |
474 |
|
|
void |
475 |
|
|
copyWithMask(const Data& other, |
476 |
|
|
const Data& mask); |
477 |
|
|
|
478 |
|
|
/** |
479 |
|
|
Data object operation methods and operators. |
480 |
|
|
*/ |
481 |
|
|
|
482 |
|
|
/** |
483 |
|
|
\brief |
484 |
|
|
Interpolates this onto the given functionspace and returns |
485 |
|
|
the result as a Data object. |
486 |
|
|
*/ |
487 |
jgs |
94 |
Data |
488 |
|
|
interpolate(const FunctionSpace& functionspace) const; |
489 |
|
|
|
490 |
|
|
/** |
491 |
|
|
\brief |
492 |
|
|
Calculates the gradient of the data at the data points of functionspace. |
493 |
|
|
If functionspace is not present the function space of Function(getDomain()) is used. |
494 |
|
|
*/ |
495 |
|
|
Data |
496 |
|
|
gradOn(const FunctionSpace& functionspace) const; |
497 |
|
|
|
498 |
|
|
Data |
499 |
|
|
grad() const; |
500 |
|
|
|
501 |
|
|
/** |
502 |
|
|
\brief |
503 |
|
|
Calculate the integral over the function space domain. |
504 |
|
|
*/ |
505 |
|
|
boost::python::numeric::array |
506 |
|
|
integrate() const; |
507 |
|
|
|
508 |
|
|
/** |
509 |
|
|
\brief |
510 |
|
|
Return a Data with a 1 for +ive values and a 0 for 0 or -ive values. |
511 |
|
|
*/ |
512 |
|
|
Data |
513 |
|
|
wherePositive() const; |
514 |
|
|
|
515 |
|
|
/** |
516 |
|
|
\brief |
517 |
jgs |
102 |
Return a Data with a 1 for -ive values and a 0 for +ive or 0 values. |
518 |
jgs |
94 |
*/ |
519 |
|
|
Data |
520 |
jgs |
102 |
whereNegative() const; |
521 |
|
|
|
522 |
|
|
/** |
523 |
|
|
\brief |
524 |
|
|
Return a Data with a 1 for +ive or 0 values and a 0 for -ive values. |
525 |
|
|
*/ |
526 |
|
|
Data |
527 |
jgs |
94 |
whereNonNegative() const; |
528 |
|
|
|
529 |
|
|
/** |
530 |
|
|
\brief |
531 |
jgs |
102 |
Return a Data with a 1 for -ive or 0 values and a 0 for +ive values. |
532 |
jgs |
94 |
*/ |
533 |
|
|
Data |
534 |
jgs |
102 |
whereNonPositive() const; |
535 |
jgs |
94 |
|
536 |
|
|
/** |
537 |
|
|
\brief |
538 |
jgs |
102 |
Return a Data with a 1 for 0 values and a 0 for +ive or -ive values. |
539 |
jgs |
94 |
*/ |
540 |
|
|
Data |
541 |
|
|
whereZero() const; |
542 |
|
|
|
543 |
|
|
/** |
544 |
|
|
\brief |
545 |
jgs |
102 |
Return a Data with a 0 for 0 values and a 1 for +ive or -ive values. |
546 |
jgs |
94 |
*/ |
547 |
|
|
Data |
548 |
jgs |
102 |
whereNonZero() const; |
549 |
|
|
|
550 |
|
|
/** |
551 |
|
|
\brief |
552 |
|
|
Return the sin of each data point of this Data object. |
553 |
|
|
*/ |
554 |
|
|
Data |
555 |
jgs |
94 |
sin() const; |
556 |
|
|
|
557 |
|
|
/** |
558 |
|
|
\brief |
559 |
jgs |
102 |
Return the cos of each data point of this Data object. |
560 |
jgs |
94 |
*/ |
561 |
|
|
Data |
562 |
|
|
cos() const; |
563 |
|
|
|
564 |
|
|
/** |
565 |
|
|
\brief |
566 |
jgs |
102 |
Return the tan of each data point of this Data object. |
567 |
jgs |
94 |
*/ |
568 |
|
|
Data |
569 |
|
|
tan() const; |
570 |
|
|
|
571 |
|
|
/** |
572 |
|
|
\brief |
573 |
jgs |
102 |
Return the log to base 10 of each data point of this Data object. |
574 |
jgs |
94 |
*/ |
575 |
|
|
Data |
576 |
|
|
log() const; |
577 |
|
|
|
578 |
|
|
/** |
579 |
|
|
\brief |
580 |
jgs |
102 |
Return the natural log of each data point of this Data object. |
581 |
jgs |
94 |
*/ |
582 |
|
|
Data |
583 |
|
|
ln() const; |
584 |
|
|
|
585 |
|
|
/** |
586 |
|
|
\brief |
587 |
jgs |
102 |
Return the maximum absolute value of this Data object. |
588 |
jgs |
94 |
*/ |
589 |
jgs |
102 |
double |
590 |
|
|
Lsup() const; |
591 |
jgs |
94 |
|
592 |
|
|
/** |
593 |
|
|
\brief |
594 |
jgs |
102 |
Return the maximum value of this Data object. |
595 |
jgs |
94 |
*/ |
596 |
jgs |
102 |
double |
597 |
|
|
sup() const; |
598 |
jgs |
94 |
|
599 |
|
|
/** |
600 |
|
|
\brief |
601 |
jgs |
102 |
Return the minimum value of this Data object. |
602 |
jgs |
94 |
*/ |
603 |
|
|
double |
604 |
jgs |
102 |
inf() const; |
605 |
jgs |
94 |
|
606 |
|
|
/** |
607 |
|
|
\brief |
608 |
jgs |
102 |
Return the absolute value of each data point of this Data object. |
609 |
jgs |
94 |
*/ |
610 |
jgs |
102 |
Data |
611 |
|
|
abs() const; |
612 |
jgs |
94 |
|
613 |
|
|
/** |
614 |
|
|
\brief |
615 |
jgs |
102 |
Return the maximum value of each data point of this Data object. |
616 |
jgs |
94 |
*/ |
617 |
jgs |
102 |
Data |
618 |
|
|
maxval() const; |
619 |
jgs |
94 |
|
620 |
|
|
/** |
621 |
|
|
\brief |
622 |
jgs |
102 |
Return the minimum value of each data point of this Data object. |
623 |
jgs |
94 |
*/ |
624 |
|
|
Data |
625 |
jgs |
102 |
minval() const; |
626 |
jgs |
94 |
|
627 |
|
|
/** |
628 |
|
|
\brief |
629 |
jgs |
102 |
Return the length of each data point of this Data object. |
630 |
|
|
sqrt(sum(A[i,j,k,l]^2)) |
631 |
jgs |
94 |
*/ |
632 |
jgs |
102 |
Data |
633 |
|
|
length() const; |
634 |
jgs |
94 |
|
635 |
|
|
/** |
636 |
|
|
\brief |
637 |
jgs |
102 |
Return the sign of each data point of this Data object. |
638 |
|
|
-1 for negative values, zero for zero values, 1 for positive values. |
639 |
jgs |
94 |
*/ |
640 |
jgs |
102 |
Data |
641 |
|
|
sign() const; |
642 |
jgs |
94 |
|
643 |
|
|
/** |
644 |
jgs |
102 |
\transpose |
645 |
|
|
Transpose each data point of this Data object around the given axis. |
646 |
jgs |
106 |
--* not implemented yet *-- |
647 |
jgs |
102 |
*/ |
648 |
|
|
Data |
649 |
|
|
transpose(int axis) const; |
650 |
|
|
|
651 |
|
|
/** |
652 |
|
|
\trace |
653 |
|
|
Calculate the trace of each data point of this Data object. |
654 |
|
|
sum(A[i,i,i,i]) |
655 |
|
|
*/ |
656 |
|
|
Data |
657 |
|
|
trace() const; |
658 |
|
|
|
659 |
|
|
/** |
660 |
|
|
\exp |
661 |
|
|
Return the exponential function of each data point of this Data object. |
662 |
|
|
*/ |
663 |
|
|
Data |
664 |
|
|
exp() const; |
665 |
|
|
|
666 |
|
|
/** |
667 |
|
|
\sqrt |
668 |
|
|
Return the square root of each data point of this Data object. |
669 |
|
|
*/ |
670 |
|
|
Data |
671 |
|
|
sqrt() const; |
672 |
|
|
|
673 |
|
|
/** |
674 |
jgs |
94 |
\brief |
675 |
jgs |
102 |
Return the given power of each data point of this Data object. |
676 |
|
|
*/ |
677 |
|
|
Data |
678 |
|
|
powD(const Data& right) const; |
679 |
|
|
|
680 |
|
|
Data |
681 |
|
|
powO(const boost::python::object& right) const; |
682 |
|
|
|
683 |
|
|
/** |
684 |
|
|
\brief |
685 |
jgs |
104 |
writes the object to a file in the DX file format |
686 |
|
|
*/ |
687 |
|
|
void |
688 |
|
|
saveDX(std::string fileName) const; |
689 |
|
|
|
690 |
|
|
/** |
691 |
|
|
\brief |
692 |
jgs |
102 |
Return the negation of each data point of this Data object. |
693 |
|
|
*/ |
694 |
|
|
Data |
695 |
|
|
neg() const; |
696 |
|
|
|
697 |
|
|
/** |
698 |
|
|
\brief |
699 |
|
|
Return the identity of each data point of this Data object. |
700 |
|
|
Simply returns this object unmodified. |
701 |
|
|
*/ |
702 |
|
|
Data |
703 |
|
|
pos() const; |
704 |
|
|
|
705 |
|
|
/** |
706 |
|
|
\brief |
707 |
|
|
Overloaded operator += |
708 |
|
|
\param right - Input - The right hand side. |
709 |
|
|
*/ |
710 |
|
|
Data& operator+=(const Data& right); |
711 |
|
|
Data& operator+=(const boost::python::object& right); |
712 |
|
|
|
713 |
|
|
/** |
714 |
|
|
\brief |
715 |
|
|
Overloaded operator -= |
716 |
|
|
\param right - Input - The right hand side. |
717 |
|
|
*/ |
718 |
|
|
Data& operator-=(const Data& right); |
719 |
|
|
Data& operator-=(const boost::python::object& right); |
720 |
|
|
|
721 |
|
|
/** |
722 |
|
|
\brief |
723 |
|
|
Overloaded operator *= |
724 |
|
|
\param right - Input - The right hand side. |
725 |
|
|
*/ |
726 |
|
|
Data& operator*=(const Data& right); |
727 |
|
|
Data& operator*=(const boost::python::object& right); |
728 |
|
|
|
729 |
|
|
/** |
730 |
|
|
\brief |
731 |
|
|
Overloaded operator /= |
732 |
|
|
\param right - Input - The right hand side. |
733 |
|
|
*/ |
734 |
|
|
Data& operator/=(const Data& right); |
735 |
|
|
Data& operator/=(const boost::python::object& right); |
736 |
|
|
|
737 |
|
|
/** |
738 |
|
|
\brief |
739 |
jgs |
94 |
Returns true if this can be interpolated to functionspace. |
740 |
|
|
*/ |
741 |
|
|
bool |
742 |
|
|
probeInterpolation(const FunctionSpace& functionspace) const; |
743 |
|
|
|
744 |
|
|
/** |
745 |
jgs |
102 |
Data object slicing methods. |
746 |
|
|
*/ |
747 |
|
|
|
748 |
|
|
/** |
749 |
jgs |
94 |
\brief |
750 |
jgs |
102 |
Returns a slice from this Data object. |
751 |
|
|
|
752 |
|
|
/description |
753 |
|
|
Implements the [] get operator in python. |
754 |
|
|
Calls getSlice. |
755 |
|
|
|
756 |
|
|
\param key - Input - python slice tuple specifying |
757 |
|
|
slice to return. |
758 |
jgs |
94 |
*/ |
759 |
jgs |
102 |
Data |
760 |
|
|
getItem(const boost::python::object& key) const; |
761 |
|
|
|
762 |
|
|
/** |
763 |
|
|
\brief |
764 |
|
|
Copies slice from value into this Data object. |
765 |
|
|
|
766 |
|
|
\description |
767 |
|
|
Implements the [] set operator in python. |
768 |
|
|
Calls setSlice. |
769 |
|
|
|
770 |
|
|
\param key - Input - python slice tuple specifying |
771 |
|
|
slice to copy from value. |
772 |
|
|
\param value - Input - Data object to copy from. |
773 |
|
|
*/ |
774 |
jgs |
94 |
void |
775 |
jgs |
102 |
setItemD(const boost::python::object& key, |
776 |
|
|
const Data& value); |
777 |
jgs |
94 |
|
778 |
jgs |
102 |
void |
779 |
|
|
setItemO(const boost::python::object& key, |
780 |
|
|
const boost::python::object& value); |
781 |
|
|
|
782 |
|
|
// These following public methods should be treated as private. |
783 |
|
|
|
784 |
jgs |
94 |
/** |
785 |
|
|
\brief |
786 |
jgs |
102 |
Perform the given unary operation on every element of every data point in |
787 |
|
|
this Data object. |
788 |
jgs |
94 |
*/ |
789 |
jgs |
102 |
template <class UnaryFunction> |
790 |
|
|
inline |
791 |
jgs |
94 |
void |
792 |
jgs |
102 |
unaryOp(UnaryFunction operation); |
793 |
|
|
|
794 |
|
|
/** |
795 |
|
|
\brief |
796 |
|
|
Return a Data object containing the specified slice of |
797 |
|
|
this Data object. |
798 |
|
|
\param region - Input - Region to copy. |
799 |
jgs |
94 |
*/ |
800 |
jgs |
102 |
Data |
801 |
|
|
getSlice(const DataArrayView::RegionType& region) const; |
802 |
jgs |
94 |
|
803 |
jgs |
102 |
/** |
804 |
|
|
\brief |
805 |
|
|
Copy the specified slice from the given value into this |
806 |
|
|
Data object. |
807 |
|
|
\param value - Input - Data to copy from. |
808 |
|
|
\param region - Input - Region to copy. |
809 |
|
|
*/ |
810 |
|
|
void |
811 |
|
|
setSlice(const Data& value, |
812 |
|
|
const DataArrayView::RegionType& region); |
813 |
|
|
|
814 |
|
|
protected: |
815 |
|
|
|
816 |
jgs |
94 |
private: |
817 |
|
|
|
818 |
|
|
/** |
819 |
|
|
\brief |
820 |
jgs |
102 |
Check *this and the right operand are compatible. Throws |
821 |
|
|
an exception if they aren't. |
822 |
|
|
\param right - Input - The right hand side. |
823 |
|
|
*/ |
824 |
|
|
inline |
825 |
|
|
void |
826 |
|
|
operandCheck(const Data& right) const |
827 |
|
|
{ |
828 |
|
|
return m_data->operandCheck(*(right.m_data.get())); |
829 |
|
|
} |
830 |
|
|
|
831 |
|
|
/** |
832 |
|
|
\brief |
833 |
|
|
Perform the specified reduction algorithm on every element of every data point in |
834 |
|
|
this Data object and return the single double value result. |
835 |
|
|
*/ |
836 |
|
|
template <class UnaryFunction> |
837 |
|
|
inline |
838 |
|
|
double |
839 |
|
|
algorithm(UnaryFunction operation) const; |
840 |
|
|
|
841 |
jgs |
106 |
template <class UnaryFunction> |
842 |
|
|
inline |
843 |
|
|
Data |
844 |
|
|
dp_algorithm(UnaryFunction operation) const; |
845 |
|
|
|
846 |
jgs |
102 |
/** |
847 |
|
|
\brief |
848 |
|
|
Perform the given binary operation on all of the data's elements. |
849 |
|
|
The underlying type of the right hand side (right) determines the final |
850 |
|
|
type of *this after the operation. For example if the right hand side |
851 |
|
|
is expanded *this will be expanded if necessary. |
852 |
|
|
RHS is a Data object. |
853 |
|
|
*/ |
854 |
|
|
template <class BinaryFunction> |
855 |
|
|
inline |
856 |
|
|
void |
857 |
|
|
binaryOp(const Data& right, |
858 |
|
|
BinaryFunction operation); |
859 |
|
|
|
860 |
|
|
/** |
861 |
|
|
\brief |
862 |
|
|
Perform the given binary operation on all of the data's elements. |
863 |
|
|
RHS is a boost::python object. |
864 |
|
|
*/ |
865 |
|
|
template <class BinaryFunction> |
866 |
|
|
inline |
867 |
|
|
void |
868 |
|
|
binaryOp(const boost::python::object& right, |
869 |
|
|
BinaryFunction operation); |
870 |
|
|
|
871 |
|
|
/** |
872 |
|
|
\brief |
873 |
|
|
Convert the data type of the RHS to match this. |
874 |
|
|
\param right - Input - data type to match. |
875 |
|
|
*/ |
876 |
|
|
void |
877 |
|
|
typeMatchLeft(Data& right) const; |
878 |
|
|
|
879 |
|
|
/** |
880 |
|
|
\brief |
881 |
|
|
Convert the data type of this to match the RHS. |
882 |
|
|
\param right - Input - data type to match. |
883 |
|
|
*/ |
884 |
|
|
void |
885 |
|
|
typeMatchRight(const Data& right); |
886 |
|
|
|
887 |
|
|
/** |
888 |
|
|
\brief |
889 |
jgs |
94 |
Construct a Data object of the appropriate type. |
890 |
|
|
*/ |
891 |
|
|
template <class IValueType> |
892 |
|
|
void |
893 |
|
|
initialise(const IValueType& value, |
894 |
|
|
const FunctionSpace& what, |
895 |
|
|
bool expanded); |
896 |
|
|
|
897 |
|
|
/** |
898 |
|
|
\brief |
899 |
|
|
Reshape the data point if the data point is currently rank 0. |
900 |
|
|
Will throw an exception if the data points are not rank 0. |
901 |
|
|
The original data point value is used for all values of the new |
902 |
|
|
data point. |
903 |
|
|
*/ |
904 |
|
|
void |
905 |
|
|
reshapeDataPoint(const DataArrayView::ShapeType& shape); |
906 |
|
|
|
907 |
|
|
// |
908 |
jgs |
102 |
// pointer to the actual data object |
909 |
jgs |
94 |
boost::shared_ptr<DataAbstract> m_data; |
910 |
|
|
|
911 |
|
|
}; |
912 |
|
|
|
913 |
|
|
template <class IValueType> |
914 |
|
|
void |
915 |
|
|
Data::initialise(const IValueType& value, |
916 |
|
|
const FunctionSpace& what, |
917 |
|
|
bool expanded) |
918 |
|
|
{ |
919 |
|
|
// |
920 |
|
|
// Construct a Data object of the appropriate type. |
921 |
|
|
// Construct the object first as there seems to be a bug which causes |
922 |
|
|
// undefined behaviour if an exception is thrown during construction |
923 |
|
|
// within the shared_ptr constructor. |
924 |
|
|
if (expanded) { |
925 |
|
|
DataAbstract* temp=new DataExpanded(value,what); |
926 |
jgs |
102 |
boost::shared_ptr<DataAbstract> temp_data(temp); |
927 |
|
|
m_data=temp_data; |
928 |
jgs |
94 |
} else { |
929 |
|
|
DataAbstract* temp=new DataConstant(value,what); |
930 |
jgs |
102 |
boost::shared_ptr<DataAbstract> temp_data(temp); |
931 |
|
|
m_data=temp_data; |
932 |
jgs |
94 |
} |
933 |
|
|
} |
934 |
|
|
|
935 |
jgs |
102 |
/** |
936 |
|
|
Binary Data object operators. |
937 |
|
|
*/ |
938 |
jgs |
94 |
|
939 |
|
|
/** |
940 |
|
|
\brief |
941 |
|
|
Operator+ |
942 |
|
|
Takes two Data objects. |
943 |
|
|
*/ |
944 |
|
|
Data operator+(const Data& left, const Data& right); |
945 |
|
|
|
946 |
|
|
/** |
947 |
|
|
\brief |
948 |
|
|
Operator- |
949 |
|
|
Takes two Data objects. |
950 |
|
|
*/ |
951 |
|
|
Data operator-(const Data& left, const Data& right); |
952 |
|
|
|
953 |
|
|
/** |
954 |
|
|
\brief |
955 |
|
|
Operator* |
956 |
|
|
Takes two Data objects. |
957 |
|
|
*/ |
958 |
|
|
Data operator*(const Data& left, const Data& right); |
959 |
|
|
|
960 |
|
|
/** |
961 |
|
|
\brief |
962 |
|
|
Operator/ |
963 |
|
|
Takes two Data objects. |
964 |
|
|
*/ |
965 |
|
|
Data operator/(const Data& left, const Data& right); |
966 |
|
|
|
967 |
|
|
/** |
968 |
|
|
\brief |
969 |
|
|
Operator+ |
970 |
|
|
Takes LHS Data object and RHS python::object. |
971 |
|
|
python::object must be convertable to Data type. |
972 |
|
|
*/ |
973 |
|
|
Data operator+(const Data& left, const boost::python::object& right); |
974 |
|
|
|
975 |
|
|
/** |
976 |
|
|
\brief |
977 |
|
|
Operator- |
978 |
|
|
Takes LHS Data object and RHS python::object. |
979 |
|
|
python::object must be convertable to Data type. |
980 |
|
|
*/ |
981 |
|
|
Data operator-(const Data& left, const boost::python::object& right); |
982 |
|
|
|
983 |
|
|
/** |
984 |
|
|
\brief |
985 |
|
|
Operator* |
986 |
|
|
Takes LHS Data object and RHS python::object. |
987 |
|
|
python::object must be convertable to Data type. |
988 |
|
|
*/ |
989 |
|
|
Data operator*(const Data& left, const boost::python::object& right); |
990 |
|
|
|
991 |
|
|
/** |
992 |
|
|
\brief |
993 |
|
|
Operator/ |
994 |
|
|
Takes LHS Data object and RHS python::object. |
995 |
|
|
python::object must be convertable to Data type. |
996 |
|
|
*/ |
997 |
|
|
Data operator/(const Data& left, const boost::python::object& right); |
998 |
|
|
|
999 |
|
|
/** |
1000 |
|
|
\brief |
1001 |
|
|
Operator+ |
1002 |
|
|
Takes LHS python::object and RHS Data object. |
1003 |
|
|
python::object must be convertable to Data type. |
1004 |
|
|
*/ |
1005 |
|
|
Data operator+(const boost::python::object& left, const Data& right); |
1006 |
|
|
|
1007 |
|
|
/** |
1008 |
|
|
\brief |
1009 |
|
|
Operator- |
1010 |
|
|
Takes LHS python::object and RHS Data object. |
1011 |
|
|
python::object must be convertable to Data type. |
1012 |
|
|
*/ |
1013 |
|
|
Data operator-(const boost::python::object& left, const Data& right); |
1014 |
|
|
|
1015 |
|
|
/** |
1016 |
|
|
\brief |
1017 |
|
|
Operator* |
1018 |
|
|
Takes LHS python::object and RHS Data object. |
1019 |
|
|
python::object must be convertable to Data type. |
1020 |
|
|
*/ |
1021 |
|
|
Data operator*(const boost::python::object& left, const Data& right); |
1022 |
|
|
|
1023 |
|
|
/** |
1024 |
|
|
\brief |
1025 |
|
|
Operator/ |
1026 |
|
|
Takes LHS python::object and RHS Data object. |
1027 |
|
|
python::object must be convertable to Data type. |
1028 |
|
|
*/ |
1029 |
|
|
Data operator/(const boost::python::object& left, const Data& right); |
1030 |
|
|
|
1031 |
|
|
/** |
1032 |
|
|
\brief |
1033 |
|
|
Output operator |
1034 |
|
|
*/ |
1035 |
|
|
std::ostream& operator<<(std::ostream& o, const Data& data); |
1036 |
|
|
|
1037 |
|
|
/** |
1038 |
|
|
\brief |
1039 |
|
|
Return true if operands are equivalent, else return false. |
1040 |
|
|
NB: this operator does very little at this point, and isn't to |
1041 |
|
|
be relied on. Requires further implementation. |
1042 |
|
|
*/ |
1043 |
jgs |
102 |
//bool operator==(const Data& left, const Data& right); |
1044 |
jgs |
94 |
|
1045 |
jgs |
102 |
/** |
1046 |
|
|
\brief |
1047 |
|
|
Perform the given binary operation with this and right as operands. |
1048 |
|
|
Right is a Data object. |
1049 |
|
|
*/ |
1050 |
jgs |
94 |
template <class BinaryFunction> |
1051 |
|
|
inline |
1052 |
|
|
void |
1053 |
|
|
Data::binaryOp(const Data& right, |
1054 |
|
|
BinaryFunction operation) |
1055 |
|
|
{ |
1056 |
|
|
// |
1057 |
|
|
// if this has a rank of zero promote it to the rank of the RHS |
1058 |
|
|
if (getPointDataView().getRank()==0 && right.getPointDataView().getRank()!=0) { |
1059 |
|
|
reshapeDataPoint(right.getPointDataView().getShape()); |
1060 |
|
|
} |
1061 |
|
|
// |
1062 |
|
|
// initially make the temporary a shallow copy |
1063 |
|
|
Data tempRight(right); |
1064 |
|
|
if (getFunctionSpace()!=right.getFunctionSpace()) { |
1065 |
|
|
if (right.probeInterpolation(getFunctionSpace())) { |
1066 |
|
|
// |
1067 |
|
|
// an interpolation is required so create a new Data |
1068 |
|
|
tempRight=Data(right,this->getFunctionSpace()); |
1069 |
|
|
} else if (probeInterpolation(right.getFunctionSpace())) { |
1070 |
|
|
// |
1071 |
|
|
// interpolate onto the RHS function space |
1072 |
|
|
Data tempLeft(*this,right.getFunctionSpace()); |
1073 |
|
|
m_data=tempLeft.m_data; |
1074 |
|
|
} |
1075 |
|
|
} |
1076 |
|
|
operandCheck(tempRight); |
1077 |
|
|
// |
1078 |
|
|
// ensure this has the right type for the RHS |
1079 |
jgs |
102 |
typeMatchRight(tempRight); |
1080 |
jgs |
94 |
// |
1081 |
|
|
// Need to cast to the concrete types so that the correct binaryOp |
1082 |
|
|
// is called. |
1083 |
|
|
if (isExpanded()) { |
1084 |
|
|
// |
1085 |
|
|
// Expanded data will be done in parallel, the right hand side can be |
1086 |
|
|
// of any data type |
1087 |
|
|
DataExpanded* leftC=dynamic_cast<DataExpanded*>(m_data.get()); |
1088 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataExpanded."); |
1089 |
|
|
escript::binaryOp(*leftC,*(tempRight.m_data.get()),operation); |
1090 |
|
|
} else if (isTagged()) { |
1091 |
|
|
// |
1092 |
|
|
// Tagged data is operated on serially, the right hand side can be |
1093 |
|
|
// either DataConstant or DataTagged |
1094 |
|
|
DataTagged* leftC=dynamic_cast<DataTagged*>(m_data.get()); |
1095 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataTagged."); |
1096 |
|
|
if (right.isTagged()) { |
1097 |
|
|
DataTagged* rightC=dynamic_cast<DataTagged*>(tempRight.m_data.get()); |
1098 |
|
|
EsysAssert((rightC!=0), "Programming error - casting to DataTagged."); |
1099 |
|
|
escript::binaryOp(*leftC,*rightC,operation); |
1100 |
|
|
} else { |
1101 |
|
|
DataConstant* rightC=dynamic_cast<DataConstant*>(tempRight.m_data.get()); |
1102 |
|
|
EsysAssert((rightC!=0), "Programming error - casting to DataConstant."); |
1103 |
|
|
escript::binaryOp(*leftC,*rightC,operation); |
1104 |
|
|
} |
1105 |
jgs |
102 |
} else if (isConstant()) { |
1106 |
jgs |
94 |
DataConstant* leftC=dynamic_cast<DataConstant*>(m_data.get()); |
1107 |
|
|
DataConstant* rightC=dynamic_cast<DataConstant*>(tempRight.m_data.get()); |
1108 |
|
|
EsysAssert((leftC!=0 && rightC!=0), "Programming error - casting to DataConstant."); |
1109 |
|
|
escript::binaryOp(*leftC,*rightC,operation); |
1110 |
|
|
} |
1111 |
|
|
} |
1112 |
|
|
|
1113 |
jgs |
102 |
/** |
1114 |
|
|
\brief |
1115 |
|
|
Perform the given binary operation with this and right as operands. |
1116 |
|
|
Right is a boost::python object. |
1117 |
|
|
*/ |
1118 |
jgs |
94 |
template <class BinaryFunction> |
1119 |
|
|
inline |
1120 |
|
|
void |
1121 |
|
|
Data::binaryOp(const boost::python::object& right, |
1122 |
|
|
BinaryFunction operation) |
1123 |
|
|
{ |
1124 |
|
|
DataArray temp(right); |
1125 |
|
|
// |
1126 |
|
|
// if this has a rank of zero promote it to the rank of the RHS. |
1127 |
|
|
if (getPointDataView().getRank()==0 && temp.getView().getRank()!=0) { |
1128 |
|
|
reshapeDataPoint(temp.getView().getShape()); |
1129 |
|
|
} |
1130 |
|
|
// |
1131 |
|
|
// Always allow scalar values for the RHS but check other shapes |
1132 |
|
|
if (temp.getView().getRank()!=0) { |
1133 |
|
|
if (!getPointDataView().checkShape(temp.getView().getShape())) { |
1134 |
|
|
throw DataException(getPointDataView().createShapeErrorMessage( |
1135 |
|
|
"Error - RHS shape doesn't match LHS shape.",temp.getView().getShape())); |
1136 |
|
|
} |
1137 |
|
|
} |
1138 |
|
|
if (isExpanded()) { |
1139 |
|
|
DataExpanded* leftC=dynamic_cast<DataExpanded*>(m_data.get()); |
1140 |
|
|
EsysAssert((leftC!=0),"Programming error - casting to DataExpanded."); |
1141 |
|
|
escript::binaryOp(*leftC,temp.getView(),operation); |
1142 |
|
|
} else if (isTagged()) { |
1143 |
|
|
DataTagged* leftC=dynamic_cast<DataTagged*>(m_data.get()); |
1144 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataTagged."); |
1145 |
|
|
escript::binaryOp(*leftC,temp.getView(),operation); |
1146 |
jgs |
102 |
} else if (isConstant()) { |
1147 |
jgs |
94 |
DataConstant* leftC=dynamic_cast<DataConstant*>(m_data.get()); |
1148 |
|
|
EsysAssert((leftC!=0),"Programming error - casting to DataConstant."); |
1149 |
|
|
escript::binaryOp(*leftC,temp.getView(),operation); |
1150 |
|
|
} |
1151 |
|
|
} |
1152 |
|
|
|
1153 |
jgs |
102 |
/** |
1154 |
|
|
\brief |
1155 |
|
|
Perform the given unary operation on other and return the result. |
1156 |
|
|
Given operation is performed on each element of each data point, thus |
1157 |
|
|
argument object is a rank n Data object, and returned object is a rank n |
1158 |
|
|
Data object. |
1159 |
|
|
Calls Data::unaryOp. |
1160 |
|
|
*/ |
1161 |
jgs |
94 |
template <class UnaryFunction> |
1162 |
|
|
inline |
1163 |
jgs |
102 |
Data |
1164 |
|
|
unaryOp(const Data& other, |
1165 |
|
|
UnaryFunction operation) |
1166 |
|
|
{ |
1167 |
|
|
Data result; |
1168 |
|
|
result.copy(other); |
1169 |
|
|
result.unaryOp(operation); |
1170 |
|
|
return result; |
1171 |
|
|
} |
1172 |
|
|
|
1173 |
|
|
/** |
1174 |
|
|
\brief |
1175 |
|
|
Perform the given unary operation on this. |
1176 |
|
|
Given operation is performed on each element of each data point. |
1177 |
|
|
Calls escript::unaryOp. |
1178 |
|
|
*/ |
1179 |
|
|
template <class UnaryFunction> |
1180 |
|
|
inline |
1181 |
jgs |
94 |
void |
1182 |
|
|
Data::unaryOp(UnaryFunction operation) |
1183 |
|
|
{ |
1184 |
|
|
if (isExpanded()) { |
1185 |
|
|
DataExpanded* leftC=dynamic_cast<DataExpanded*>(m_data.get()); |
1186 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataExpanded."); |
1187 |
|
|
escript::unaryOp(*leftC,operation); |
1188 |
|
|
} else if (isTagged()) { |
1189 |
|
|
DataTagged* leftC=dynamic_cast<DataTagged*>(m_data.get()); |
1190 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataTagged."); |
1191 |
|
|
escript::unaryOp(*leftC,operation); |
1192 |
jgs |
102 |
} else if (isConstant()) { |
1193 |
jgs |
94 |
DataConstant* leftC=dynamic_cast<DataConstant*>(m_data.get()); |
1194 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataConstant."); |
1195 |
|
|
escript::unaryOp(*leftC,operation); |
1196 |
|
|
} |
1197 |
|
|
} |
1198 |
|
|
|
1199 |
jgs |
102 |
/** |
1200 |
|
|
\brief |
1201 |
|
|
Perform the given Data object reduction algorithm on this and return the result. |
1202 |
|
|
Given operation combines each element of each data point, thus argument |
1203 |
|
|
object (*this) is a rank n Data object, and returned object is a scalar. |
1204 |
|
|
Calls escript::algorithm. |
1205 |
|
|
*/ |
1206 |
jgs |
94 |
template <class UnaryFunction> |
1207 |
|
|
inline |
1208 |
|
|
double |
1209 |
|
|
Data::algorithm(UnaryFunction operation) const |
1210 |
|
|
{ |
1211 |
|
|
if (isExpanded()) { |
1212 |
|
|
DataExpanded* leftC=dynamic_cast<DataExpanded*>(m_data.get()); |
1213 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataExpanded."); |
1214 |
|
|
return escript::algorithm(*leftC,operation); |
1215 |
jgs |
102 |
} else if (isTagged()) { |
1216 |
jgs |
94 |
DataTagged* leftC=dynamic_cast<DataTagged*>(m_data.get()); |
1217 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataTagged."); |
1218 |
|
|
return escript::algorithm(*leftC,operation); |
1219 |
jgs |
102 |
} else if (isConstant()) { |
1220 |
jgs |
94 |
DataConstant* leftC=dynamic_cast<DataConstant*>(m_data.get()); |
1221 |
|
|
EsysAssert((leftC!=0), "Programming error - casting to DataConstant."); |
1222 |
|
|
return escript::algorithm(*leftC,operation); |
1223 |
|
|
} |
1224 |
jgs |
102 |
return 0; |
1225 |
jgs |
94 |
} |
1226 |
|
|
|
1227 |
jgs |
102 |
/** |
1228 |
|
|
\brief |
1229 |
|
|
Perform the given data point reduction algorithm on data and return the result. |
1230 |
|
|
Given operation combines each element within each data point into a scalar, |
1231 |
|
|
thus argument object is a rank n Data object, and returned object is a |
1232 |
|
|
rank 0 Data object. |
1233 |
|
|
Calls escript::dp_algorithm. |
1234 |
|
|
*/ |
1235 |
jgs |
94 |
template <class UnaryFunction> |
1236 |
|
|
inline |
1237 |
|
|
Data |
1238 |
jgs |
106 |
Data::dp_algorithm(UnaryFunction operation) const |
1239 |
jgs |
94 |
{ |
1240 |
jgs |
106 |
Data result(0,DataArrayView::ShapeType(),getFunctionSpace(),isExpanded()); |
1241 |
|
|
if (isExpanded()) { |
1242 |
|
|
DataExpanded* dataE=dynamic_cast<DataExpanded*>(m_data.get()); |
1243 |
jgs |
102 |
DataExpanded* resultE=dynamic_cast<DataExpanded*>(result.m_data.get()); |
1244 |
|
|
EsysAssert((dataE!=0), "Programming error - casting data to DataExpanded."); |
1245 |
|
|
EsysAssert((resultE!=0), "Programming error - casting result to DataExpanded."); |
1246 |
|
|
escript::dp_algorithm(*dataE,*resultE,operation); |
1247 |
jgs |
106 |
} else if (isTagged()) { |
1248 |
|
|
DataTagged* dataT=dynamic_cast<DataTagged*>(m_data.get()); |
1249 |
jgs |
102 |
DataTagged* resultT=dynamic_cast<DataTagged*>(result.m_data.get()); |
1250 |
|
|
EsysAssert((dataT!=0), "Programming error - casting data to DataTagged."); |
1251 |
|
|
EsysAssert((resultT!=0), "Programming error - casting result to DataTagged."); |
1252 |
|
|
escript::dp_algorithm(*dataT,*resultT,operation); |
1253 |
jgs |
106 |
} else if (isConstant()) { |
1254 |
|
|
DataConstant* dataC=dynamic_cast<DataConstant*>(m_data.get()); |
1255 |
jgs |
102 |
DataConstant* resultC=dynamic_cast<DataConstant*>(result.m_data.get()); |
1256 |
|
|
EsysAssert((dataC!=0), "Programming error - casting data to DataConstant."); |
1257 |
|
|
EsysAssert((resultC!=0), "Programming error - casting result to DataConstant."); |
1258 |
|
|
escript::dp_algorithm(*dataC,*resultC,operation); |
1259 |
|
|
} |
1260 |
jgs |
94 |
return result; |
1261 |
|
|
} |
1262 |
|
|
|
1263 |
|
|
} |
1264 |
|
|
#endif |