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// $Id$ |
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/* |
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****************************************************************************** |
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* * |
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* COPYRIGHT ACcESS 2004 - All Rights Reserved * |
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* * |
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* This software is the property of ACcESS. No part of this code * |
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* may be copied in any form or by any means without the expressed written * |
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* consent of ACcESS. Copying, use or modification of this software * |
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* by any unauthorised person is illegal unless that * |
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* person has a software license agreement with ACcESS. * |
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* * |
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****************************************************************************** |
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*/ |
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|
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/** \file Data.h */ |
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|
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#ifndef DATA_H |
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#define DATA_H |
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|
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#include "escript/Data/DataAbstract.h" |
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#include "escript/Data/DataTagged.h" |
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#include "escript/Data/DataAlgorithm.h" |
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#include "escript/Data/FunctionSpace.h" |
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#include "escript/Data/BinaryOp.h" |
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#include "escript/Data/UnaryOp.h" |
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#include "escript/Data/DataException.h" |
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|
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extern "C" { |
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#include "escript/Data/DataC.h" |
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} |
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|
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#include <iostream> |
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#include <string> |
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#include <memory> |
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#include <algorithm> |
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|
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#include <boost/shared_ptr.hpp> |
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#include <boost/python/object.hpp> |
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#include <boost/python/list.hpp> |
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#include <boost/python/tuple.hpp> |
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#include <boost/python/numeric.hpp> |
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|
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namespace escript { |
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|
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// |
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// Forward declaration for various implementations of Data. |
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class DataEmpty; |
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class DataConstant; |
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class DataTagged; |
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class DataExpanded; |
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|
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/** |
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\brief |
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Data creates the appropriate Data object for the given construction |
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arguments. |
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|
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Description: |
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Data is essentially a factory class which creates the appropriate Data |
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object for the given construction arguments. It retains control over |
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the object created for the lifetime of the object. |
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The type of Data object referred to may change during the lifetime of |
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the Data object. |
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*/ |
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class Data { |
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|
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public: |
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|
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// These typedefs allow function names to be cast to pointers |
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// to functions of the appropriate type when calling unaryOp etc. |
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typedef double (*UnaryDFunPtr)(double); |
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typedef double (*BinaryDFunPtr)(double,double); |
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|
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/** |
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Constructors. |
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*/ |
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|
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/** |
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\brief |
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Default constructor. |
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Creates a DataEmpty object. |
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*/ |
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Data(); |
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|
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/** |
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\brief |
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Copy constructor. |
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WARNING: Only performs a shallow copy. |
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*/ |
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Data(const Data& inData); |
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|
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/** |
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\brief |
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Constructor from another Data object. If "what" is different from the |
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function space of inData the inData are tried to be interpolated to what, |
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otherwise a shallow copy of inData is returned. |
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*/ |
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Data(const Data& inData, |
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const FunctionSpace& what); |
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|
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/** |
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\brief |
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Constructor which copies data from a DataArrayView. |
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|
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\param value - Input - Data value for a single point. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the value. Otherwise a more efficient storage |
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mechanism will be used. |
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*/ |
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Data(const DataArrayView& value, |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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|
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/** |
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\brief |
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Constructor which creates a Data from a DataArrayView shape. |
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|
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\param value - Input - Single value applied to all Data. |
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\param dataPointShape - Input - The shape of each data point. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the given value. Otherwise a more efficient storage |
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mechanism will be used. |
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*/ |
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Data(double value, |
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const DataArrayView::ShapeType& dataPointShape=DataArrayView::ShapeType(), |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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|
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/** |
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\brief |
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Constructor which performs a deep copy of a region from another Data object. |
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|
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\param inData - Input - Input Data object. |
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\param region - Input - Region to copy. |
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*/ |
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Data(const Data& inData, |
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const DataArrayView::RegionType& region); |
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|
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/** |
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\brief |
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Constructor which will create Tagged data if expanded is false. |
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No attempt is made to ensure the tag keys match the tag keys |
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within the function space. |
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|
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\param tagKeys - Input - List of tag values. |
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\param values - Input - List of values, one for each tag. |
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\param defaultValue - Input - A default value, used if tag doesn't exist. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the appropriate values. |
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*/ |
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Data(const DataTagged::TagListType& tagKeys, |
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const DataTagged::ValueListType& values, |
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const DataArrayView& defaultValue, |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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|
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/** |
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\brief |
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Constructor which copies data from a python numarray. |
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|
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\param value - Input - Data value for a single point. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the value. Otherwise a more efficient storage |
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mechanism will be used. |
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*/ |
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Data(const boost::python::numeric::array& value, |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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|
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/** |
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\brief |
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Constructor which copies data from any object that can be converted into |
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a python numarray. |
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|
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\param value - Input - Input data. |
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\param what - Input - A description of what this data represents. |
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\param expanded - Input - Flag, if true fill the entire container with |
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the value. Otherwise a more efficient storage |
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mechanism will be used. |
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*/ |
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Data(const boost::python::object& value, |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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|
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/** |
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\brief |
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Constructor which creates a DataConstant. |
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Copies data from any object that can be converted |
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into a numarray. All other parameters are copied from other. |
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|
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\param value - Input - Input data. |
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\param other - Input - contains all other parameters. |
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*/ |
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Data(const boost::python::object& value, |
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const Data& other); |
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|
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/** |
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\brief |
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Constructor which creates a DataConstant of "shape" with constant value. |
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*/ |
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Data(double value, |
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const boost::python::tuple& shape=boost::python::make_tuple(), |
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const FunctionSpace& what=FunctionSpace(), |
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bool expanded=false); |
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/** |
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\brief |
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Destructor |
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*/ |
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~Data(); |
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|
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/** |
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\brief |
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Perform a deep copy. |
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*/ |
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void |
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copy(const Data& other); |
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|
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/** |
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Member access methods. |
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*/ |
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|
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/** |
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\brief |
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Return the values of all data-points as a single python numarray object. |
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*/ |
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const boost::python::numeric::array |
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convertToNumArray(); |
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|
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/** |
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\brief |
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Return the values of all data-points for the given sample as a single python numarray object. |
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*/ |
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const boost::python::numeric::array |
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convertToNumArrayFromSampleNo(int sampleNo); |
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|
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/** |
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\brief |
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Return the value of the specified data-point as a single python numarray object. |
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*/ |
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const boost::python::numeric::array |
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convertToNumArrayFromDPNo(int sampleNo, |
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int dataPointNo); |
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|
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/** |
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\brief |
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Fills the expanded Data object from values of a python numarray object. |
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*/ |
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void |
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fillFromNumArray(const boost::python::numeric::array); |
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|
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/** |
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\brief |
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Return the tag number associated with the given data-point. |
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|
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The data-point number here corresponds to the data-point number in the |
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numarray returned by convertToNumArray. |
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*/ |
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int |
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getTagNumber(int dpno); |
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|
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/** |
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\brief |
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Return the C wrapper for the Data object. |
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*/ |
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escriptDataC |
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getDataC(); |
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|
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/** |
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\brief |
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Return the C wrapper for the Data object - const version. |
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*/ |
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escriptDataC |
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getDataC() const; |
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|
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/** |
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\brief |
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Write the data as a string. |
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*/ |
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inline |
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std::string |
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toString() const |
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{ |
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return m_data->toString(); |
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} |
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|
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/** |
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\brief |
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Return the DataArrayView of the point data. This essentially contains |
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the shape information for each data point although it also may be used |
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to manipulate the point data. |
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*/ |
296 |
inline |
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const DataArrayView& |
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getPointDataView() const |
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{ |
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return m_data->getPointDataView(); |
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} |
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|
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/** |
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\brief |
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Whatever the current Data type make this into a DataExpanded. |
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*/ |
307 |
void |
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expand(); |
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|
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/** |
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\brief |
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If possible convert this Data to DataTagged. This will only allow |
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Constant data to be converted to tagged. An attempt to convert |
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Expanded data to tagged will throw an exception. |
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*/ |
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void |
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tag(); |
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|
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/** |
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\brief |
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Return true if this Data is expanded. |
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*/ |
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bool |
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isExpanded() const; |
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|
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/** |
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\brief |
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Return true if this Data is tagged. |
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*/ |
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bool |
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isTagged() const; |
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|
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/** |
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\brief |
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Return true if this Data is constant. |
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*/ |
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bool |
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isConstant() const; |
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|
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/** |
341 |
\brief |
342 |
Return true if this Data is empty. |
343 |
*/ |
344 |
bool |
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isEmpty() const; |
346 |
|
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/** |
348 |
\brief |
349 |
Return the function space. |
350 |
*/ |
351 |
inline |
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const FunctionSpace& |
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getFunctionSpace() const |
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{ |
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return m_data->getFunctionSpace(); |
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} |
357 |
|
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/** |
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\brief |
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Return a copy of the function space. |
361 |
*/ |
362 |
const FunctionSpace |
363 |
getCopyOfFunctionSpace() const; |
364 |
|
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/** |
366 |
\brief |
367 |
Return the domain. |
368 |
*/ |
369 |
inline |
370 |
const AbstractDomain& |
371 |
getDomain() const |
372 |
{ |
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return getFunctionSpace().getDomain(); |
374 |
} |
375 |
|
376 |
/** |
377 |
\brief |
378 |
Return a copy of the domain. |
379 |
*/ |
380 |
const AbstractDomain |
381 |
getCopyOfDomain() const; |
382 |
|
383 |
/** |
384 |
\brief |
385 |
Return the rank of the point data. |
386 |
*/ |
387 |
inline |
388 |
int |
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getDataPointRank() const |
390 |
{ |
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return m_data->getPointDataView().getRank(); |
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} |
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|
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/** |
395 |
\brief |
396 |
Return the number of samples. |
397 |
*/ |
398 |
inline |
399 |
int |
400 |
getNumSamples() const |
401 |
{ |
402 |
return m_data->getNumSamples(); |
403 |
} |
404 |
|
405 |
/** |
406 |
\brief |
407 |
Return the number of data points per sample. |
408 |
*/ |
409 |
inline |
410 |
int |
411 |
getNumDataPointsPerSample() const |
412 |
{ |
413 |
return m_data->getNumDPPSample(); |
414 |
} |
415 |
|
416 |
/** |
417 |
\brief |
418 |
Return the sample data for the given sample no. This is not the |
419 |
preferred interface but is provided for use by C code. |
420 |
\param sampleNo - Input - the given sample no. |
421 |
*/ |
422 |
inline |
423 |
DataAbstract::ValueType::value_type* |
424 |
getSampleData(DataAbstract::ValueType::size_type sampleNo) |
425 |
{ |
426 |
return m_data->getSampleData(sampleNo); |
427 |
} |
428 |
|
429 |
/** |
430 |
\brief |
431 |
Return the sample data for the given tag. If an attempt is made to |
432 |
access data that isn't tagged an exception will be thrown. |
433 |
\param tag - Input - the tag key. |
434 |
*/ |
435 |
inline |
436 |
DataAbstract::ValueType::value_type* |
437 |
getSampleDataByTag(int tag) |
438 |
{ |
439 |
return m_data->getSampleDataByTag(tag); |
440 |
} |
441 |
|
442 |
/** |
443 |
\brief |
444 |
Assign the given value to the data-points referenced by the given |
445 |
reference number. |
446 |
|
447 |
The value supplied is a python numarray object. The data from this numarray |
448 |
is unpacked into a DataArray, and this is used to set the corresponding |
449 |
data-points in the underlying Data object. |
450 |
|
451 |
If the underlying Data object cannot be accessed via reference numbers, an |
452 |
exception will be thrown. |
453 |
|
454 |
\param ref - Input - reference number. |
455 |
\param value - Input - value to assign to data-points associated with |
456 |
the given reference number. |
457 |
*/ |
458 |
void |
459 |
setRefValue(int ref, |
460 |
const boost::python::numeric::array& value); |
461 |
|
462 |
/** |
463 |
\brief |
464 |
Return the values associated with the data-points referenced by the given |
465 |
reference number. |
466 |
|
467 |
The value supplied is a python numarray object. The data from the corresponding |
468 |
data-points in this Data object are packed into the given numarray object. |
469 |
|
470 |
If the underlying Data object cannot be accessed via reference numbers, an |
471 |
exception will be thrown. |
472 |
|
473 |
\param ref - Input - reference number. |
474 |
\param value - Output - object to receive values from data-points |
475 |
associated with the given reference number. |
476 |
*/ |
477 |
void |
478 |
getRefValue(int ref, |
479 |
boost::python::numeric::array& value); |
480 |
|
481 |
/** |
482 |
\brief |
483 |
Return a view into the data for the data point specified. |
484 |
NOTE: Construction of the DataArrayView is a relatively expensive |
485 |
operation. |
486 |
\param sampleNo - Input - |
487 |
\param dataPointNo - Input - |
488 |
*/ |
489 |
inline |
490 |
DataArrayView |
491 |
getDataPoint(int sampleNo, |
492 |
int dataPointNo) |
493 |
{ |
494 |
return m_data->getDataPoint(sampleNo,dataPointNo); |
495 |
} |
496 |
|
497 |
/** |
498 |
\brief |
499 |
Return a reference to the data point shape. |
500 |
*/ |
501 |
const DataArrayView::ShapeType& |
502 |
getDataPointShape() const; |
503 |
|
504 |
/** |
505 |
\brief |
506 |
Return the data point shape as a tuple of integers. |
507 |
*/ |
508 |
const boost::python::tuple |
509 |
getShapeTuple() const; |
510 |
|
511 |
/** |
512 |
\brief |
513 |
Return the size of the data point. It is the product of the |
514 |
data point shape dimensions. |
515 |
*/ |
516 |
int |
517 |
getDataPointSize() const; |
518 |
|
519 |
/** |
520 |
\brief |
521 |
Return the number of doubles stored for this Data. |
522 |
*/ |
523 |
DataArrayView::ValueType::size_type |
524 |
getLength() const; |
525 |
|
526 |
/** |
527 |
\brief |
528 |
Assign the given value to the tag. Implicitly converts this |
529 |
object to type DataTagged. Throws an exception if this object |
530 |
cannot be converted to a DataTagged object. |
531 |
\param tagKey - Input - Integer key. |
532 |
\param value - Input - Value to associate with given key. |
533 |
*/ |
534 |
void |
535 |
setTaggedValue(int tagKey, |
536 |
const boost::python::object& value); |
537 |
|
538 |
/** |
539 |
\brief |
540 |
Assign the given value to the tag. Implicitly converts this |
541 |
object to type DataTagged. Throws an exception if this object |
542 |
cannot be converted to a DataTagged object. |
543 |
\param tagKey - Input - Integer key. |
544 |
\param value - Input - Value to associate with given key. |
545 |
*/ |
546 |
void |
547 |
setTaggedValueFromCPP(int tagKey, |
548 |
const DataArrayView& value); |
549 |
|
550 |
/** |
551 |
\brief |
552 |
Copy other Data object into this Data object where mask is positive. |
553 |
*/ |
554 |
void |
555 |
copyWithMask(const Data& other, |
556 |
const Data& mask); |
557 |
|
558 |
/** |
559 |
Data object operation methods and operators. |
560 |
*/ |
561 |
|
562 |
/** |
563 |
\brief |
564 |
Interpolates this onto the given functionspace and returns |
565 |
the result as a Data object. |
566 |
* |
567 |
*/ |
568 |
Data |
569 |
interpolate(const FunctionSpace& functionspace) const; |
570 |
|
571 |
/** |
572 |
\brief |
573 |
Calculates the gradient of the data at the data points of functionspace. |
574 |
If functionspace is not present the function space of Function(getDomain()) is used. |
575 |
* |
576 |
*/ |
577 |
Data |
578 |
gradOn(const FunctionSpace& functionspace) const; |
579 |
|
580 |
Data |
581 |
grad() const; |
582 |
|
583 |
/** |
584 |
\brief |
585 |
Calculate the integral over the function space domain. |
586 |
* |
587 |
*/ |
588 |
boost::python::numeric::array |
589 |
integrate() const; |
590 |
|
591 |
/** |
592 |
\brief |
593 |
Return a Data with a 1 for +ive values and a 0 for 0 or -ive values. |
594 |
* |
595 |
*/ |
596 |
Data |
597 |
wherePositive() const; |
598 |
|
599 |
/** |
600 |
\brief |
601 |
Return a Data with a 1 for -ive values and a 0 for +ive or 0 values. |
602 |
* |
603 |
*/ |
604 |
Data |
605 |
whereNegative() const; |
606 |
|
607 |
/** |
608 |
\brief |
609 |
Return a Data with a 1 for +ive or 0 values and a 0 for -ive values. |
610 |
* |
611 |
*/ |
612 |
Data |
613 |
whereNonNegative() const; |
614 |
|
615 |
/** |
616 |
\brief |
617 |
Return a Data with a 1 for -ive or 0 values and a 0 for +ive values. |
618 |
* |
619 |
*/ |
620 |
Data |
621 |
whereNonPositive() const; |
622 |
|
623 |
/** |
624 |
\brief |
625 |
Return a Data with a 1 for 0 values and a 0 for +ive or -ive values. |
626 |
* |
627 |
*/ |
628 |
Data |
629 |
whereZero() const; |
630 |
|
631 |
/** |
632 |
\brief |
633 |
Return a Data with a 0 for 0 values and a 1 for +ive or -ive values. |
634 |
* |
635 |
*/ |
636 |
Data |
637 |
whereNonZero() const; |
638 |
|
639 |
/** |
640 |
\brief |
641 |
Return the maximum absolute value of this Data object. |
642 |
* |
643 |
*/ |
644 |
double |
645 |
Lsup() const; |
646 |
|
647 |
/** |
648 |
\brief |
649 |
Return the minimum absolute value of this Data object. |
650 |
* |
651 |
*/ |
652 |
double |
653 |
Linf() const; |
654 |
|
655 |
/** |
656 |
\brief |
657 |
Return the maximum value of this Data object. |
658 |
* |
659 |
*/ |
660 |
double |
661 |
sup() const; |
662 |
|
663 |
/** |
664 |
\brief |
665 |
Return the minimum value of this Data object. |
666 |
* |
667 |
*/ |
668 |
double |
669 |
inf() const; |
670 |
|
671 |
/** |
672 |
\brief |
673 |
Return the absolute value of each data point of this Data object. |
674 |
* |
675 |
*/ |
676 |
Data |
677 |
abs() const; |
678 |
|
679 |
/** |
680 |
\brief |
681 |
Return the maximum value of each data point of this Data object. |
682 |
* |
683 |
*/ |
684 |
Data |
685 |
maxval() const; |
686 |
|
687 |
/** |
688 |
\brief |
689 |
Return the minimum value of each data point of this Data object. |
690 |
* |
691 |
*/ |
692 |
Data |
693 |
minval() const; |
694 |
|
695 |
/** |
696 |
\brief |
697 |
Return the (sample number, data-point number) of the data point with |
698 |
the minimum value in this Data object. |
699 |
*/ |
700 |
const boost::python::tuple |
701 |
mindp() const; |
702 |
|
703 |
void |
704 |
calc_mindp(int& SampleNo, |
705 |
int& DataPointNo) const; |
706 |
|
707 |
/** |
708 |
\brief |
709 |
Return the length of each data point of this Data object. |
710 |
sqrt(sum(A[i,j,k,l]^2)) |
711 |
* |
712 |
*/ |
713 |
Data |
714 |
length() const; |
715 |
|
716 |
/** |
717 |
\brief |
718 |
Return the sign of each data point of this Data object. |
719 |
-1 for negative values, zero for zero values, 1 for positive values. |
720 |
* |
721 |
*/ |
722 |
Data |
723 |
sign() const; |
724 |
|
725 |
/** |
726 |
\brief |
727 |
Transpose each data point of this Data object around the given axis. |
728 |
--* not implemented yet *-- |
729 |
* |
730 |
*/ |
731 |
Data |
732 |
transpose(int axis) const; |
733 |
|
734 |
/** |
735 |
\brief |
736 |
Calculate the trace of each data point of this Data object. |
737 |
sum(A[i,i,i,i]) |
738 |
* |
739 |
*/ |
740 |
Data |
741 |
trace() const; |
742 |
|
743 |
/** |
744 |
\brief |
745 |
Return the sin of each data point of this Data object. |
746 |
* |
747 |
*/ |
748 |
Data |
749 |
sin() const; |
750 |
|
751 |
/** |
752 |
\brief |
753 |
Return the cos of each data point of this Data object. |
754 |
* |
755 |
*/ |
756 |
Data |
757 |
cos() const; |
758 |
|
759 |
/** |
760 |
\brief |
761 |
Return the tan of each data point of this Data object. |
762 |
* |
763 |
*/ |
764 |
Data |
765 |
tan() const; |
766 |
|
767 |
/** |
768 |
\brief |
769 |
Return the asin of each data point of this Data object. |
770 |
* |
771 |
*/ |
772 |
Data |
773 |
asin() const; |
774 |
|
775 |
/** |
776 |
\brief |
777 |
Return the acos of each data point of this Data object. |
778 |
* |
779 |
*/ |
780 |
Data |
781 |
acos() const; |
782 |
|
783 |
/** |
784 |
\brief |
785 |
Return the atan of each data point of this Data object. |
786 |
* |
787 |
*/ |
788 |
Data |
789 |
atan() const; |
790 |
|
791 |
/** |
792 |
\brief |
793 |
Return the sinh of each data point of this Data object. |
794 |
* |
795 |
*/ |
796 |
Data |
797 |
sinh() const; |
798 |
|
799 |
/** |
800 |
\brief |
801 |
Return the cosh of each data point of this Data object. |
802 |
* |
803 |
*/ |
804 |
Data |
805 |
cosh() const; |
806 |
|
807 |
/** |
808 |
\brief |
809 |
Return the tanh of each data point of this Data object. |
810 |
* |
811 |
*/ |
812 |
Data |
813 |
tanh() const; |
814 |
|
815 |
/** |
816 |
\brief |
817 |
Return the asinh of each data point of this Data object. |
818 |
* |
819 |
*/ |
820 |
Data |
821 |
asinh() const; |
822 |
|
823 |
/** |
824 |
\brief |
825 |
Return the acosh of each data point of this Data object. |
826 |
* |
827 |
*/ |
828 |
Data |
829 |
acosh() const; |
830 |
|
831 |
/** |
832 |
\brief |
833 |
Return the atanh of each data point of this Data object. |
834 |
* |
835 |
*/ |
836 |
Data |
837 |
atanh() const; |
838 |
|
839 |
/** |
840 |
\brief |
841 |
Return the log to base 10 of each data point of this Data object. |
842 |
* |
843 |
*/ |
844 |
Data |
845 |
log() const; |
846 |
|
847 |
/** |
848 |
\brief |
849 |
Return the natural log of each data point of this Data object. |
850 |
* |
851 |
*/ |
852 |
Data |
853 |
ln() const; |
854 |
|
855 |
/** |
856 |
\brief |
857 |
Return the exponential function of each data point of this Data object. |
858 |
* |
859 |
*/ |
860 |
Data |
861 |
exp() const; |
862 |
|
863 |
/** |
864 |
\brief |
865 |
Return the square root of each data point of this Data object. |
866 |
* |
867 |
*/ |
868 |
Data |
869 |
sqrt() const; |
870 |
|
871 |
/** |
872 |
\brief |
873 |
Return the negation of each data point of this Data object. |
874 |
* |
875 |
*/ |
876 |
Data |
877 |
neg() const; |
878 |
|
879 |
/** |
880 |
\brief |
881 |
Return the identity of each data point of this Data object. |
882 |
Simply returns this object unmodified. |
883 |
* |
884 |
*/ |
885 |
Data |
886 |
pos() const; |
887 |
|
888 |
/** |
889 |
\brief |
890 |
Return the given power of each data point of this Data object. |
891 |
|
892 |
\param right Input - the power to raise the object to. |
893 |
* |
894 |
*/ |
895 |
Data |
896 |
powD(const Data& right) const; |
897 |
|
898 |
/** |
899 |
\brief |
900 |
Return the given power of each data point of this boost python object. |
901 |
|
902 |
\param right Input - the power to raise the object to. |
903 |
* |
904 |
*/ |
905 |
Data |
906 |
powO(const boost::python::object& right) const; |
907 |
|
908 |
/** |
909 |
\brief |
910 |
writes the object to a file in the DX file format |
911 |
*/ |
912 |
void |
913 |
saveDX(std::string fileName) const; |
914 |
|
915 |
/** |
916 |
\brief |
917 |
writes the object to a file in the VTK file format |
918 |
*/ |
919 |
void |
920 |
saveVTK(std::string fileName) const; |
921 |
|
922 |
/** |
923 |
\brief |
924 |
Overloaded operator += |
925 |
\param right - Input - The right hand side. |
926 |
* |
927 |
*/ |
928 |
Data& operator+=(const Data& right); |
929 |
Data& operator+=(const boost::python::object& right); |
930 |
|
931 |
/** |
932 |
\brief |
933 |
Overloaded operator -= |
934 |
\param right - Input - The right hand side. |
935 |
* |
936 |
*/ |
937 |
Data& operator-=(const Data& right); |
938 |
Data& operator-=(const boost::python::object& right); |
939 |
|
940 |
/** |
941 |
\brief |
942 |
Overloaded operator *= |
943 |
\param right - Input - The right hand side. |
944 |
* |
945 |
*/ |
946 |
Data& operator*=(const Data& right); |
947 |
Data& operator*=(const boost::python::object& right); |
948 |
|
949 |
/** |
950 |
\brief |
951 |
Overloaded operator /= |
952 |
\param right - Input - The right hand side. |
953 |
* |
954 |
*/ |
955 |
Data& operator/=(const Data& right); |
956 |
Data& operator/=(const boost::python::object& right); |
957 |
|
958 |
/** |
959 |
\brief |
960 |
Returns true if this can be interpolated to functionspace. |
961 |
*/ |
962 |
bool |
963 |
probeInterpolation(const FunctionSpace& functionspace) const; |
964 |
|
965 |
/** |
966 |
Data object slicing methods. |
967 |
*/ |
968 |
|
969 |
/** |
970 |
\brief |
971 |
Returns a slice from this Data object. |
972 |
|
973 |
/description |
974 |
Implements the [] get operator in python. |
975 |
Calls getSlice. |
976 |
|
977 |
\param key - Input - python slice tuple specifying |
978 |
slice to return. |
979 |
*/ |
980 |
Data |
981 |
getItem(const boost::python::object& key) const; |
982 |
|
983 |
/** |
984 |
\brief |
985 |
Copies slice from value into this Data object. |
986 |
|
987 |
Implements the [] set operator in python. |
988 |
Calls setSlice. |
989 |
|
990 |
\param key - Input - python slice tuple specifying |
991 |
slice to copy from value. |
992 |
\param value - Input - Data object to copy from. |
993 |
*/ |
994 |
void |
995 |
setItemD(const boost::python::object& key, |
996 |
const Data& value); |
997 |
|
998 |
void |
999 |
setItemO(const boost::python::object& key, |
1000 |
const boost::python::object& value); |
1001 |
|
1002 |
// These following public methods should be treated as private. |
1003 |
|
1004 |
/** |
1005 |
\brief |
1006 |
Perform the given unary operation on every element of every data point in |
1007 |
this Data object. |
1008 |
*/ |
1009 |
template <class UnaryFunction> |
1010 |
inline |
1011 |
void |
1012 |
unaryOp(UnaryFunction operation); |
1013 |
|
1014 |
/** |
1015 |
\brief |
1016 |
Return a Data object containing the specified slice of |
1017 |
this Data object. |
1018 |
\param region - Input - Region to copy. |
1019 |
* |
1020 |
*/ |
1021 |
Data |
1022 |
getSlice(const DataArrayView::RegionType& region) const; |
1023 |
|
1024 |
/** |
1025 |
\brief |
1026 |
Copy the specified slice from the given value into this |
1027 |
Data object. |
1028 |
\param value - Input - Data to copy from. |
1029 |
\param region - Input - Region to copy. |
1030 |
* |
1031 |
*/ |
1032 |
void |
1033 |
setSlice(const Data& value, |
1034 |
const DataArrayView::RegionType& region); |
1035 |
|
1036 |
/** |
1037 |
\brief |
1038 |
Archive the current Data object to the given file. |
1039 |
\param fileName - Input - file to archive to. |
1040 |
*/ |
1041 |
void |
1042 |
archiveData(const std::string fileName); |
1043 |
|
1044 |
/** |
1045 |
\brief |
1046 |
Extract the Data object archived in the given file, overwriting |
1047 |
the current Data object. |
1048 |
Note - the current object must be of type DataEmpty. |
1049 |
\param fileName - Input - file to extract from. |
1050 |
\param fspace - Input - a suitable FunctionSpace descibing the data. |
1051 |
*/ |
1052 |
void |
1053 |
extractData(const std::string fileName, |
1054 |
const FunctionSpace& fspace); |
1055 |
|
1056 |
protected: |
1057 |
|
1058 |
private: |
1059 |
|
1060 |
/** |
1061 |
\brief |
1062 |
Check *this and the right operand are compatible. Throws |
1063 |
an exception if they aren't. |
1064 |
\param right - Input - The right hand side. |
1065 |
*/ |
1066 |
inline |
1067 |
void |
1068 |
operandCheck(const Data& right) const |
1069 |
{ |
1070 |
return m_data->operandCheck(*(right.m_data.get())); |
1071 |
} |
1072 |
|
1073 |
/** |
1074 |
\brief |
1075 |
Perform the specified reduction algorithm on every element of every data point in |
1076 |
this Data object according to the given function and return the single value result. |
1077 |
*/ |
1078 |
template <class BinaryFunction> |
1079 |
inline |
1080 |
double |
1081 |
algorithm(BinaryFunction operation, |
1082 |
double initial_value) const; |
1083 |
|
1084 |
/** |
1085 |
\brief |
1086 |
Reduce each data-point in this Data object using the given operation. Return a Data |
1087 |
object with the same number of data-points, but with each data-point containing only |
1088 |
one value - the result of the reduction operation on the corresponding data-point in |
1089 |
this Data object |
1090 |
*/ |
1091 |
template <class BinaryFunction> |
1092 |
inline |
1093 |
Data |
1094 |
dp_algorithm(BinaryFunction operation, |
1095 |
double initial_value) const; |
1096 |
|
1097 |
/** |
1098 |
\brief |
1099 |
Perform the given binary operation on all of the data's elements. |
1100 |
The underlying type of the right hand side (right) determines the final |
1101 |
type of *this after the operation. For example if the right hand side |
1102 |
is expanded *this will be expanded if necessary. |
1103 |
RHS is a Data object. |
1104 |
*/ |
1105 |
template <class BinaryFunction> |
1106 |
inline |
1107 |
void |
1108 |
binaryOp(const Data& right, |
1109 |
BinaryFunction operation); |
1110 |
|
1111 |
/** |
1112 |
\brief |
1113 |
Perform the given binary operation on all of the data's elements. |
1114 |
RHS is a boost::python object. |
1115 |
*/ |
1116 |
template <class BinaryFunction> |
1117 |
inline |
1118 |
void |
1119 |
binaryOp(const boost::python::object& right, |
1120 |
BinaryFunction operation); |
1121 |
|
1122 |
/** |
1123 |
\brief |
1124 |
Convert the data type of the RHS to match this. |
1125 |
\param right - Input - data type to match. |
1126 |
*/ |
1127 |
void |
1128 |
typeMatchLeft(Data& right) const; |
1129 |
|
1130 |
/** |
1131 |
\brief |
1132 |
Convert the data type of this to match the RHS. |
1133 |
\param right - Input - data type to match. |
1134 |
*/ |
1135 |
void |
1136 |
typeMatchRight(const Data& right); |
1137 |
|
1138 |
/** |
1139 |
\brief |
1140 |
Construct a Data object of the appropriate type. |
1141 |
*/ |
1142 |
template <class IValueType> |
1143 |
void |
1144 |
initialise(const IValueType& value, |
1145 |
const FunctionSpace& what, |
1146 |
bool expanded); |
1147 |
|
1148 |
/** |
1149 |
\brief |
1150 |
Reshape the data point if the data point is currently rank 0. |
1151 |
Will throw an exception if the data points are not rank 0. |
1152 |
The original data point value is used for all values of the new |
1153 |
data point. |
1154 |
*/ |
1155 |
void |
1156 |
reshapeDataPoint(const DataArrayView::ShapeType& shape); |
1157 |
|
1158 |
// |
1159 |
// pointer to the actual data object |
1160 |
boost::shared_ptr<DataAbstract> m_data; |
1161 |
|
1162 |
// |
1163 |
// pointer to the internal profiling data |
1164 |
struct profDataEntry *profData; |
1165 |
|
1166 |
}; |
1167 |
|
1168 |
template <class IValueType> |
1169 |
void |
1170 |
Data::initialise(const IValueType& value, |
1171 |
const FunctionSpace& what, |
1172 |
bool expanded) |
1173 |
{ |
1174 |
// |
1175 |
// Construct a Data object of the appropriate type. |
1176 |
// Construct the object first as there seems to be a bug which causes |
1177 |
// undefined behaviour if an exception is thrown during construction |
1178 |
// within the shared_ptr constructor. |
1179 |
if (expanded) { |
1180 |
DataAbstract* temp=new DataExpanded(value,what); |
1181 |
boost::shared_ptr<DataAbstract> temp_data(temp); |
1182 |
m_data=temp_data; |
1183 |
} else { |
1184 |
DataAbstract* temp=new DataConstant(value,what); |
1185 |
boost::shared_ptr<DataAbstract> temp_data(temp); |
1186 |
m_data=temp_data; |
1187 |
} |
1188 |
} |
1189 |
|
1190 |
/** |
1191 |
Binary Data object operators. |
1192 |
*/ |
1193 |
|
1194 |
/** |
1195 |
\brief |
1196 |
Operator+ |
1197 |
Takes two Data objects. |
1198 |
*/ |
1199 |
Data operator+(const Data& left, const Data& right); |
1200 |
|
1201 |
/** |
1202 |
\brief |
1203 |
Operator- |
1204 |
Takes two Data objects. |
1205 |
*/ |
1206 |
Data operator-(const Data& left, const Data& right); |
1207 |
|
1208 |
/** |
1209 |
\brief |
1210 |
Operator* |
1211 |
Takes two Data objects. |
1212 |
*/ |
1213 |
Data operator*(const Data& left, const Data& right); |
1214 |
|
1215 |
/** |
1216 |
\brief |
1217 |
Operator/ |
1218 |
Takes two Data objects. |
1219 |
*/ |
1220 |
Data operator/(const Data& left, const Data& right); |
1221 |
|
1222 |
/** |
1223 |
\brief |
1224 |
Operator+ |
1225 |
Takes LHS Data object and RHS python::object. |
1226 |
python::object must be convertable to Data type. |
1227 |
*/ |
1228 |
Data operator+(const Data& left, const boost::python::object& right); |
1229 |
|
1230 |
/** |
1231 |
\brief |
1232 |
Operator- |
1233 |
Takes LHS Data object and RHS python::object. |
1234 |
python::object must be convertable to Data type. |
1235 |
*/ |
1236 |
Data operator-(const Data& left, const boost::python::object& right); |
1237 |
|
1238 |
/** |
1239 |
\brief |
1240 |
Operator* |
1241 |
Takes LHS Data object and RHS python::object. |
1242 |
python::object must be convertable to Data type. |
1243 |
*/ |
1244 |
Data operator*(const Data& left, const boost::python::object& right); |
1245 |
|
1246 |
/** |
1247 |
\brief |
1248 |
Operator/ |
1249 |
Takes LHS Data object and RHS python::object. |
1250 |
python::object must be convertable to Data type. |
1251 |
*/ |
1252 |
Data operator/(const Data& left, const boost::python::object& right); |
1253 |
|
1254 |
/** |
1255 |
\brief |
1256 |
Operator+ |
1257 |
Takes LHS python::object and RHS Data object. |
1258 |
python::object must be convertable to Data type. |
1259 |
*/ |
1260 |
Data operator+(const boost::python::object& left, const Data& right); |
1261 |
|
1262 |
/** |
1263 |
\brief |
1264 |
Operator- |
1265 |
Takes LHS python::object and RHS Data object. |
1266 |
python::object must be convertable to Data type. |
1267 |
*/ |
1268 |
Data operator-(const boost::python::object& left, const Data& right); |
1269 |
|
1270 |
/** |
1271 |
\brief |
1272 |
Operator* |
1273 |
Takes LHS python::object and RHS Data object. |
1274 |
python::object must be convertable to Data type. |
1275 |
*/ |
1276 |
Data operator*(const boost::python::object& left, const Data& right); |
1277 |
|
1278 |
/** |
1279 |
\brief |
1280 |
Operator/ |
1281 |
Takes LHS python::object and RHS Data object. |
1282 |
python::object must be convertable to Data type. |
1283 |
*/ |
1284 |
Data operator/(const boost::python::object& left, const Data& right); |
1285 |
|
1286 |
/** |
1287 |
\brief |
1288 |
Output operator |
1289 |
*/ |
1290 |
std::ostream& operator<<(std::ostream& o, const Data& data); |
1291 |
|
1292 |
/** |
1293 |
\brief |
1294 |
Return true if operands are equivalent, else return false. |
1295 |
NB: this operator does very little at this point, and isn't to |
1296 |
be relied on. Requires further implementation. |
1297 |
*/ |
1298 |
//bool operator==(const Data& left, const Data& right); |
1299 |
|
1300 |
/** |
1301 |
\brief |
1302 |
Perform the given binary operation with this and right as operands. |
1303 |
Right is a Data object. |
1304 |
*/ |
1305 |
template <class BinaryFunction> |
1306 |
inline |
1307 |
void |
1308 |
Data::binaryOp(const Data& right, |
1309 |
BinaryFunction operation) |
1310 |
{ |
1311 |
// |
1312 |
// if this has a rank of zero promote it to the rank of the RHS |
1313 |
if (getPointDataView().getRank()==0 && right.getPointDataView().getRank()!=0) { |
1314 |
reshapeDataPoint(right.getPointDataView().getShape()); |
1315 |
} |
1316 |
// |
1317 |
// initially make the temporary a shallow copy |
1318 |
Data tempRight(right); |
1319 |
if (getFunctionSpace()!=right.getFunctionSpace()) { |
1320 |
if (right.probeInterpolation(getFunctionSpace())) { |
1321 |
// |
1322 |
// an interpolation is required so create a new Data |
1323 |
tempRight=Data(right,this->getFunctionSpace()); |
1324 |
} else if (probeInterpolation(right.getFunctionSpace())) { |
1325 |
// |
1326 |
// interpolate onto the RHS function space |
1327 |
Data tempLeft(*this,right.getFunctionSpace()); |
1328 |
m_data=tempLeft.m_data; |
1329 |
} |
1330 |
} |
1331 |
operandCheck(tempRight); |
1332 |
// |
1333 |
// ensure this has the right type for the RHS |
1334 |
typeMatchRight(tempRight); |
1335 |
// |
1336 |
// Need to cast to the concrete types so that the correct binaryOp |
1337 |
// is called. |
1338 |
if (isExpanded()) { |
1339 |
// |
1340 |
// Expanded data will be done in parallel, the right hand side can be |
1341 |
// of any data type |
1342 |
DataExpanded* leftC=dynamic_cast<DataExpanded*>(m_data.get()); |
1343 |
EsysAssert((leftC!=0), "Programming error - casting to DataExpanded."); |
1344 |
escript::binaryOp(*leftC,*(tempRight.m_data.get()),operation); |
1345 |
} else if (isTagged()) { |
1346 |
// |
1347 |
// Tagged data is operated on serially, the right hand side can be |
1348 |
// either DataConstant or DataTagged |
1349 |
DataTagged* leftC=dynamic_cast<DataTagged*>(m_data.get()); |
1350 |
EsysAssert((leftC!=0), "Programming error - casting to DataTagged."); |
1351 |
if (right.isTagged()) { |
1352 |
DataTagged* rightC=dynamic_cast<DataTagged*>(tempRight.m_data.get()); |
1353 |
EsysAssert((rightC!=0), "Programming error - casting to DataTagged."); |
1354 |
escript::binaryOp(*leftC,*rightC,operation); |
1355 |
} else { |
1356 |
DataConstant* rightC=dynamic_cast<DataConstant*>(tempRight.m_data.get()); |
1357 |
EsysAssert((rightC!=0), "Programming error - casting to DataConstant."); |
1358 |
escript::binaryOp(*leftC,*rightC,operation); |
1359 |
} |
1360 |
} else if (isConstant()) { |
1361 |
DataConstant* leftC=dynamic_cast<DataConstant*>(m_data.get()); |
1362 |
DataConstant* rightC=dynamic_cast<DataConstant*>(tempRight.m_data.get()); |
1363 |
EsysAssert((leftC!=0 && rightC!=0), "Programming error - casting to DataConstant."); |
1364 |
escript::binaryOp(*leftC,*rightC,operation); |
1365 |
} |
1366 |
} |
1367 |
|
1368 |
/** |
1369 |
\brief |
1370 |
Perform the given binary operation with this and right as operands. |
1371 |
Right is a boost::python object. |
1372 |
*/ |
1373 |
template <class BinaryFunction> |
1374 |
inline |
1375 |
void |
1376 |
Data::binaryOp(const boost::python::object& right, |
1377 |
BinaryFunction operation) |
1378 |
{ |
1379 |
DataArray temp(right); |
1380 |
// |
1381 |
// if this has a rank of zero promote it to the rank of the RHS. |
1382 |
if (getPointDataView().getRank()==0 && temp.getView().getRank()!=0) { |
1383 |
reshapeDataPoint(temp.getView().getShape()); |
1384 |
} |
1385 |
// |
1386 |
// Always allow scalar values for the RHS but check other shapes |
1387 |
if (temp.getView().getRank()!=0) { |
1388 |
if (!getPointDataView().checkShape(temp.getView().getShape())) { |
1389 |
throw DataException(getPointDataView().createShapeErrorMessage( |
1390 |
"Error - RHS shape doesn't match LHS shape.",temp.getView().getShape())); |
1391 |
} |
1392 |
} |
1393 |
if (isExpanded()) { |
1394 |
DataExpanded* leftC=dynamic_cast<DataExpanded*>(m_data.get()); |
1395 |
EsysAssert((leftC!=0),"Programming error - casting to DataExpanded."); |
1396 |
escript::binaryOp(*leftC,temp.getView(),operation); |
1397 |
} else if (isTagged()) { |
1398 |
DataTagged* leftC=dynamic_cast<DataTagged*>(m_data.get()); |
1399 |
EsysAssert((leftC!=0), "Programming error - casting to DataTagged."); |
1400 |
escript::binaryOp(*leftC,temp.getView(),operation); |
1401 |
} else if (isConstant()) { |
1402 |
DataConstant* leftC=dynamic_cast<DataConstant*>(m_data.get()); |
1403 |
EsysAssert((leftC!=0),"Programming error - casting to DataConstant."); |
1404 |
escript::binaryOp(*leftC,temp.getView(),operation); |
1405 |
} |
1406 |
} |
1407 |
|
1408 |
/** |
1409 |
\brief |
1410 |
Perform the given unary operation on other and return the result. |
1411 |
Given operation is performed on each element of each data point, thus |
1412 |
argument object is a rank n Data object, and returned object is a rank n |
1413 |
Data object. |
1414 |
Calls Data::unaryOp. |
1415 |
*/ |
1416 |
template <class UnaryFunction> |
1417 |
inline |
1418 |
Data |
1419 |
unaryOp(const Data& other, |
1420 |
UnaryFunction operation) |
1421 |
{ |
1422 |
Data result; |
1423 |
result.copy(other); |
1424 |
result.unaryOp(operation); |
1425 |
return result; |
1426 |
} |
1427 |
|
1428 |
/** |
1429 |
\brief |
1430 |
Perform the given unary operation on this. |
1431 |
Given operation is performed on each element of each data point. |
1432 |
Calls escript::unaryOp. |
1433 |
*/ |
1434 |
template <class UnaryFunction> |
1435 |
inline |
1436 |
void |
1437 |
Data::unaryOp(UnaryFunction operation) |
1438 |
{ |
1439 |
if (isExpanded()) { |
1440 |
DataExpanded* leftC=dynamic_cast<DataExpanded*>(m_data.get()); |
1441 |
EsysAssert((leftC!=0), "Programming error - casting to DataExpanded."); |
1442 |
escript::unaryOp(*leftC,operation); |
1443 |
} else if (isTagged()) { |
1444 |
DataTagged* leftC=dynamic_cast<DataTagged*>(m_data.get()); |
1445 |
EsysAssert((leftC!=0), "Programming error - casting to DataTagged."); |
1446 |
escript::unaryOp(*leftC,operation); |
1447 |
} else if (isConstant()) { |
1448 |
DataConstant* leftC=dynamic_cast<DataConstant*>(m_data.get()); |
1449 |
EsysAssert((leftC!=0), "Programming error - casting to DataConstant."); |
1450 |
escript::unaryOp(*leftC,operation); |
1451 |
} |
1452 |
} |
1453 |
|
1454 |
/** |
1455 |
\brief |
1456 |
Perform the given Data object reduction algorithm on this and return the result. |
1457 |
Given operation combines each element of each data point, thus argument |
1458 |
object (*this) is a rank n Data object, and returned object is a scalar. |
1459 |
Calls escript::algorithm. |
1460 |
*/ |
1461 |
template <class BinaryFunction> |
1462 |
inline |
1463 |
double |
1464 |
Data::algorithm(BinaryFunction operation, double initial_value) const |
1465 |
{ |
1466 |
if (isExpanded()) { |
1467 |
DataExpanded* leftC=dynamic_cast<DataExpanded*>(m_data.get()); |
1468 |
EsysAssert((leftC!=0), "Programming error - casting to DataExpanded."); |
1469 |
return escript::algorithm(*leftC,operation,initial_value); |
1470 |
} else if (isTagged()) { |
1471 |
DataTagged* leftC=dynamic_cast<DataTagged*>(m_data.get()); |
1472 |
EsysAssert((leftC!=0), "Programming error - casting to DataTagged."); |
1473 |
return escript::algorithm(*leftC,operation,initial_value); |
1474 |
} else if (isConstant()) { |
1475 |
DataConstant* leftC=dynamic_cast<DataConstant*>(m_data.get()); |
1476 |
EsysAssert((leftC!=0), "Programming error - casting to DataConstant."); |
1477 |
return escript::algorithm(*leftC,operation,initial_value); |
1478 |
} |
1479 |
return 0; |
1480 |
} |
1481 |
|
1482 |
/** |
1483 |
\brief |
1484 |
Perform the given data point reduction algorithm on data and return the result. |
1485 |
Given operation combines each element within each data point into a scalar, |
1486 |
thus argument object is a rank n Data object, and returned object is a |
1487 |
rank 0 Data object. |
1488 |
Calls escript::dp_algorithm. |
1489 |
*/ |
1490 |
template <class BinaryFunction> |
1491 |
inline |
1492 |
Data |
1493 |
Data::dp_algorithm(BinaryFunction operation, double initial_value) const |
1494 |
{ |
1495 |
Data result(0,DataArrayView::ShapeType(),getFunctionSpace(),isExpanded()); |
1496 |
if (isExpanded()) { |
1497 |
DataExpanded* dataE=dynamic_cast<DataExpanded*>(m_data.get()); |
1498 |
DataExpanded* resultE=dynamic_cast<DataExpanded*>(result.m_data.get()); |
1499 |
EsysAssert((dataE!=0), "Programming error - casting data to DataExpanded."); |
1500 |
EsysAssert((resultE!=0), "Programming error - casting result to DataExpanded."); |
1501 |
escript::dp_algorithm(*dataE,*resultE,operation,initial_value); |
1502 |
} else if (isTagged()) { |
1503 |
DataTagged* dataT=dynamic_cast<DataTagged*>(m_data.get()); |
1504 |
DataTagged* resultT=dynamic_cast<DataTagged*>(result.m_data.get()); |
1505 |
EsysAssert((dataT!=0), "Programming error - casting data to DataTagged."); |
1506 |
EsysAssert((resultT!=0), "Programming error - casting result to DataTagged."); |
1507 |
escript::dp_algorithm(*dataT,*resultT,operation,initial_value); |
1508 |
} else if (isConstant()) { |
1509 |
DataConstant* dataC=dynamic_cast<DataConstant*>(m_data.get()); |
1510 |
DataConstant* resultC=dynamic_cast<DataConstant*>(result.m_data.get()); |
1511 |
EsysAssert((dataC!=0), "Programming error - casting data to DataConstant."); |
1512 |
EsysAssert((resultC!=0), "Programming error - casting result to DataConstant."); |
1513 |
escript::dp_algorithm(*dataC,*resultC,operation,initial_value); |
1514 |
} |
1515 |
return result; |
1516 |
} |
1517 |
|
1518 |
} |
1519 |
#endif |