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// $Id$ |
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|
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/* |
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****************************************************************************** |
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* * |
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* COPYRIGHT ACcESS 2004 - All Rights Reserved * |
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* * |
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* This software is the property of ACcESS. No part of this code * |
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* may be copied in any form or by any means without the expressed written * |
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* consent of ACcESS. Copying, use or modification of this software * |
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* by any unauthorised person is illegal unless that person has a software * |
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* license agreement with ACcESS. * |
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* * |
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****************************************************************************** |
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*/ |
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|
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#if !defined escript_DataArrayView_20040323_H |
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#define escript_DataArrayView_20040323_H |
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|
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#include "EsysAssert.h" |
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|
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#include "DataVector.h" |
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#include "LocalOps.h" |
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|
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#include <boost/python/numeric.hpp> |
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#include <boost/python/object.hpp> |
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|
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#include <vector> |
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|
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namespace escript { |
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|
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/** |
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\brief |
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DataArrayView provides a view of external data, configured according |
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to the given shape information and offset. |
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|
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Description: |
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DataArrayView provides a view of data allocated externally. The |
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external data should provide sufficient values so that the dimensions |
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specified for the view shape will be satisfied. The viewer can update |
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values within the external data but cannot resize the external data. |
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|
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The view provided represents a single n-dimensional data-point |
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comprised of values taken from the given data array, starting at the |
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specified offset and extending for as many values as are necessary to |
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satisfy the given shape. The default offset can be changed, or different |
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offsets specified, in order to provide views of other data-points in |
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the underlying data array. |
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*/ |
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|
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class DataArrayView { |
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|
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friend bool operator==(const DataArrayView& left, const DataArrayView& right); |
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friend bool operator!=(const DataArrayView& left, const DataArrayView& right); |
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|
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public: |
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|
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// |
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// Some basic types which define the data values and view shapes. |
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typedef DataVector ValueType; |
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//typedef std::vector<double> ValueType; |
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typedef std::vector<int> ShapeType; |
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typedef std::vector<std::pair<int, int> > RegionType; |
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typedef std::vector<std::pair<int, int> > RegionLoopRangeType; |
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|
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/** |
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\brief |
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Default constructor for DataArrayView. |
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|
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Description: |
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Default constructor for DataArrayView. |
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Creates an empty view with no associated data array. |
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|
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This is essentially useless but here for completeness. |
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*/ |
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DataArrayView(); |
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|
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/** |
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\brief |
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Constructor for DataArrayView. |
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|
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Description: |
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Constructor for DataArrayView. |
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|
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\param data - Input - |
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Array holding data to be viewed. This must be large enough |
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to supply sufficient values for the specified shape starting at |
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the given offset. |
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\param viewShape - Input - |
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The shape of the view to create. |
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\param offset - Input - |
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Offset into the data at which view should start. |
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*/ |
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DataArrayView(ValueType& data, |
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const ShapeType& viewShape, |
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int offset=0); |
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|
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/** |
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\brief |
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Copy constructor for DataArrayView. |
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|
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Description: |
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Copy constructor for DataArrayView. |
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|
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\param other - Input - |
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DataArrayView to copy. |
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|
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NOTE: The copy references the same data array. |
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*/ |
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DataArrayView(const DataArrayView& other); |
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|
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/** |
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\brief |
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Copy from a numarray into the data array viewed by this. |
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This must have same shape as the given value - will throw if not. |
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*/ |
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void |
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copy(const boost::python::numeric::array& value); |
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|
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/** |
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\brief |
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Copy data from another DataArrayView into the data array viewed by this |
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starting at the default offset in both views. |
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The shapes of both views must be the same - will throw if not. |
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NB: views may or may not reference same underlying data array! |
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*/ |
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void |
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copy(const DataArrayView& other); |
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|
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/** |
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\brief |
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Copy data from another DataArrayView into this view starting at the |
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given offset in this view and the default offset in the other view. |
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The shapes of both views must be the same - will throw if not. |
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NB: views may or may not reference same underlying data array! |
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*/ |
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void |
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copy(ValueType::size_type offset, |
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const DataArrayView& other); |
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|
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/** |
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\brief |
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Copy data from another DataArrayView into this view starting at the |
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given offsets in each view. |
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The shapes of both views must be compatible - will throw if not. |
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NB: views may or may not reference same underlying data array! |
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|
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\param thisOffset - Input - |
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Offset into this view's data array to copy to. |
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\param other - Input - |
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View to copy data from. |
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\param otherOffset - Input - |
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Offset into the other view's data array to copy from. |
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*/ |
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void |
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copy(ValueType::size_type thisOffset, |
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const DataArrayView& other, |
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ValueType::size_type otherOffset); |
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|
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/** |
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\brief |
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Copy the given single value over the entire view starting at the given |
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offset in the view's data array. |
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|
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\param offset - Input - |
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Offset into this view's data array to copy to. |
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\param value - Input - |
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Value to copy. |
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*/ |
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void |
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copy(ValueType::size_type offset, |
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ValueType::value_type value); |
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|
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/** |
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\brief |
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Check if view is empty. ie: does not point to any actual data. |
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*/ |
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bool |
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isEmpty() const; |
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|
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/** |
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\brief |
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Return this view's offset into the viewed data array. |
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*/ |
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ValueType::size_type |
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getOffset() const; |
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|
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/** |
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\brief |
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Set the offset into the data array at which this view is to start. |
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This could be used to step through the underlying data array by incrementing |
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the offset by noValues successively. Thus this view would provide a moving |
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window on the underlying data with the given shape. |
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*/ |
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void |
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setOffset(ValueType::size_type offset); |
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|
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/** |
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\brief |
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Increment the offset by the number of values in the shape, if possible. Thus |
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moving the view onto the next data point of the given shape in the underlying |
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data array. |
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*/ |
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void |
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incrOffset(); |
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|
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/** |
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\brief |
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Check the (given) offset will not result in two few values being available in |
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the underlying data array for this view's shape. |
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*/ |
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bool |
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checkOffset() const; |
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|
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bool |
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checkOffset(ValueType::size_type offset) const; |
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|
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/** |
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\brief |
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Return the rank of the shape of this view. |
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*/ |
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int |
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getRank() const; |
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|
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/** |
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\brief |
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Return the number of values for the shape of this view. |
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*/ |
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int |
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noValues() const; |
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|
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/** |
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\brief |
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Calculate the number of values for the given shape or region. |
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This is purely a utility method and has no bearing on this view. |
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*/ |
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static |
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int |
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noValues(const ShapeType& shape); |
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|
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static |
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int |
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noValues(const RegionLoopRangeType& region); |
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|
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/** |
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\brief |
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Return a reference to the underlying data array. |
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*/ |
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ValueType& |
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getData() const; |
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|
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/** |
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\brief |
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Return a reference to the data value with the given |
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index in this view. This takes into account the offset. |
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*/ |
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ValueType::reference |
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getData(ValueType::size_type i) const; |
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|
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/** |
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\brief |
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Return the shape of this view. |
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*/ |
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const |
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ShapeType& |
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getShape() const; |
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|
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/** |
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\brief |
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Return true if the given shape is the same as this view's shape. |
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*/ |
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bool |
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checkShape(const ShapeType& other) const; |
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|
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/** |
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\brief |
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Create a shape error message. Normally used when there is a shape |
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mismatch between this shape and the other shape. |
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|
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\param messagePrefix - Input - |
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First part of the error message. |
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\param other - Input - |
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The other shape. |
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*/ |
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std::string |
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createShapeErrorMessage(const std::string& messagePrefix, |
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const ShapeType& other) const; |
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|
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/** |
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\brief |
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Return the viewed data as a formatted string. |
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Not recommended for very large objects! |
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|
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\param suffix - Input - |
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Suffix appended to index display. |
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*/ |
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std::string |
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toString(const std::string& suffix=std::string("")) const; |
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|
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/** |
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\brief |
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Return the given shape as a string. |
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This is purely a utility method and has no bearing on this view. |
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|
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\param shape - Input. |
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*/ |
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static |
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std::string |
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shapeToString(const ShapeType& shape); |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the only element |
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in the view, *ignoring the offset*. |
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Assumes a rank 0 view. |
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*/ |
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ValueType::size_type |
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relIndex() const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the element at |
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position i in the view, *ignoring the offset*. |
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Assumes a rank 1 view. |
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*/ |
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ValueType::size_type |
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relIndex(ValueType::size_type i) const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the element at |
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position i,j in the view, *ignoring the offset*. |
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Assumes a rank 2 view. |
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*/ |
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ValueType::size_type |
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relIndex(ValueType::size_type i, |
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ValueType::size_type j) const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the element at |
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position i,j,k in the view, *ignoring the offset*. |
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Assumes a rank 3 view. |
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*/ |
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ValueType::size_type |
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relIndex(ValueType::size_type i, |
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ValueType::size_type j, |
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ValueType::size_type k) const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the element at |
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position i,j,k,m in the view, *ignoring the offset*. |
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Assumes a rank 4 view. |
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*/ |
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ValueType::size_type |
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relIndex(ValueType::size_type i, |
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ValueType::size_type j, |
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ValueType::size_type k, |
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ValueType::size_type m) const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the only element |
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in the view. |
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Assumes a rank 0 view. |
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*/ |
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ValueType::size_type |
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index() const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the element at |
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position i in the view. |
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Assumes a rank 1 view. |
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*/ |
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ValueType::size_type |
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index(ValueType::size_type i) const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the element at |
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position i,j in the view. |
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Assumes a rank 2 view. |
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*/ |
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ValueType::size_type |
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index(ValueType::size_type i, |
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ValueType::size_type j) const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the element at |
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position i,j,k in the view. |
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Assumes a rank 3 view. |
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*/ |
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ValueType::size_type |
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index(ValueType::size_type i, |
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ValueType::size_type j, |
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ValueType::size_type k) const; |
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|
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/** |
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\brief |
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Return the 1 dimensional index into the data array of the element at |
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position i,j,k,m in the view. |
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Assumes a rank 4 view. |
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*/ |
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ValueType::size_type |
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index(ValueType::size_type i, |
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ValueType::size_type j, |
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ValueType::size_type k, |
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ValueType::size_type m) const; |
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|
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/** |
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\brief |
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Return a reference for the only element in the view. |
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Assumes a rank 0 view. |
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*/ |
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ValueType::reference |
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operator()(); |
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|
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ValueType::const_reference |
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operator()() const; |
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|
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/** |
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\brief |
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Return a reference to the element at position i in the view. |
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Assumes a rank 1 view. |
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*/ |
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ValueType::reference |
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operator()(ValueType::size_type i); |
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|
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ValueType::const_reference |
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operator()(ValueType::size_type i) const; |
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|
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/** |
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\brief |
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Return a reference to the element at position i,j in the view. |
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Assumes a rank 2 view. |
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*/ |
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ValueType::reference |
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operator()(ValueType::size_type i, |
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ValueType::size_type j); |
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|
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ValueType::const_reference |
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operator()(ValueType::size_type i, |
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ValueType::size_type j) const; |
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|
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/** |
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\brief |
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Return a reference to the element at position i,j,k in the view. |
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Assumes a rank 3 view. |
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*/ |
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ValueType::reference |
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operator()(ValueType::size_type i, |
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ValueType::size_type j, |
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ValueType::size_type k); |
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|
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ValueType::const_reference |
459 |
operator()(ValueType::size_type i, |
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ValueType::size_type j, |
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ValueType::size_type k) const; |
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|
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/** |
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\brief |
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Return a reference to the element at position i,j,k,m in the view. |
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Assumes a rank 4 view. |
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*/ |
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ValueType::reference |
469 |
operator()(ValueType::size_type i, |
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ValueType::size_type j, |
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ValueType::size_type k, |
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ValueType::size_type m); |
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|
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ValueType::const_reference |
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operator()(ValueType::size_type i, |
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ValueType::size_type j, |
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ValueType::size_type k, |
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ValueType::size_type m) const; |
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|
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/** |
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\brief |
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Determine the shape of the specified slice region. |
483 |
This is purely a utility method and has no bearing on this view. |
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|
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\param region - Input - |
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Slice region. |
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*/ |
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static |
489 |
ShapeType |
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getResultSliceShape(const RegionType& region); |
491 |
|
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/** |
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\brief |
494 |
Determine the region specified by the given python slice object. |
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|
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\param key - Input - |
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python slice object specifying region to be returned. |
498 |
|
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The slice object is a tuple of n python slice specifiers, where |
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n <= the rank of this Data object. Each slice specifier specifies the |
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range of indexes to be sliced from the corresponding dimension. The |
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first specifier corresponds to the first dimension, the second to the |
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second and so on. Where n < the rank, the remaining dimensions are |
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sliced across the full range of their indicies. |
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|
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Each slice specifier is of the form "a:b", which specifies a slice |
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from index a, up to but not including index b. Where index a is ommitted |
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a is assumed to be 0. Where index b is ommitted, b is assumed to be the |
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length of this dimension. Where both are ommitted (eg: ":") the slice is |
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assumed to encompass that entire dimension. |
511 |
|
512 |
Where one of the slice specifiers is a single integer, eg: [1], we |
513 |
want to generate a rank-1 dimension object, as opposed to eg: [1,2] |
514 |
which implies we want to take a rank dimensional object with one |
515 |
dimension of size 1. |
516 |
|
517 |
The return value is a vector of pairs with length equal to the rank of |
518 |
this object. Each pair corresponds to the range of indicies from the |
519 |
corresponding dimension to be sliced from, as specified in the input |
520 |
slice object. |
521 |
|
522 |
Examples: |
523 |
|
524 |
For a rank 1 object of shape(5): |
525 |
|
526 |
getSliceRegion(:) => < <0,5> > |
527 |
getSliceRegion(2:3) => < <2,3> > |
528 |
getSliceRegion(:3) => < <0,3> > |
529 |
getSliceRegion(2:) => < <2,5> > |
530 |
|
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For a rank 2 object of shape(4,5): |
532 |
|
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getSliceRegion(2:3) => < <2,3> <0,5> > |
534 |
getSliceRegion(2) => < <2,3> <0,5> > |
535 |
NB: but return object requested will have rank 1, shape(5), with |
536 |
values taken from index 2 of this object's first dimension. |
537 |
|
538 |
For a rank 3 object of shape (2,4,6): |
539 |
|
540 |
getSliceRegion(0:2,0:4,0:6) => < <0,2> <0,4> <0,6> > |
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getSliceRegion(:,:,:) => < <0,2> <0,4> <0,6> > |
542 |
getSliceRegion(0:1) => < <0,1> <0,4> <0,6> > |
543 |
getSliceRegion(:1,0:2) => < <0,1> <0,2> <0,6> > |
544 |
|
545 |
*/ |
546 |
RegionType |
547 |
getSliceRegion(const boost::python::object& key) const; |
548 |
|
549 |
/** |
550 |
\brief |
551 |
Copy a data slice specified by the given region from the given view |
552 |
into this view, using the default offsets in both views. |
553 |
|
554 |
\param other - Input - |
555 |
View to copy data from. |
556 |
\param region - Input - |
557 |
Region in other view to copy data from. |
558 |
*/ |
559 |
void |
560 |
copySlice(const DataArrayView& other, |
561 |
const RegionLoopRangeType& region); |
562 |
|
563 |
/** |
564 |
\brief |
565 |
Copy a data slice specified by the given region and offset from the |
566 |
given view into this view at the given offset. |
567 |
|
568 |
\param thisOffset - Input - |
569 |
Copy the slice to this offset in this view. |
570 |
\param other - Input - |
571 |
View to copy data from. |
572 |
\param otherOffset - Input - |
573 |
Copy the slice from this offset in the given view. |
574 |
\param region - Input - |
575 |
Region in other view to copy data from. |
576 |
*/ |
577 |
void |
578 |
copySlice(ValueType::size_type thisOffset, |
579 |
const DataArrayView& other, |
580 |
ValueType::size_type otherOffset, |
581 |
const RegionLoopRangeType& region); |
582 |
|
583 |
/** |
584 |
\brief |
585 |
Copy data into a slice specified by the given region in this view from |
586 |
the given view, using the default offsets in both views. |
587 |
|
588 |
\param other - Input - |
589 |
View to copy data from. |
590 |
\param region - Input - |
591 |
Region in this view to copy data to. |
592 |
*/ |
593 |
void |
594 |
copySliceFrom(const DataArrayView& other, |
595 |
const RegionLoopRangeType& region); |
596 |
|
597 |
/** |
598 |
\brief |
599 |
Copy data into a slice specified by the given region and offset in |
600 |
this view from the given view at the given offset. |
601 |
|
602 |
\param thisOffset - Input - |
603 |
Copy the slice to this offset in this view. |
604 |
\param other - Input - |
605 |
View to copy data from. |
606 |
\param otherOffset - Input - |
607 |
Copy the slice from this offset in the given view. |
608 |
\param region - Input - |
609 |
Region in this view to copy data to. |
610 |
*/ |
611 |
void |
612 |
copySliceFrom(ValueType::size_type thisOffset, |
613 |
const DataArrayView& other, |
614 |
ValueType::size_type otherOffset, |
615 |
const RegionLoopRangeType& region); |
616 |
|
617 |
/** |
618 |
\brief |
619 |
Perform the unary operation on the data point specified by the view's |
620 |
default offset. Applies the specified operation to each value in the data |
621 |
point. |
622 |
|
623 |
Called by escript::unaryOp. |
624 |
|
625 |
\param operation - Input - |
626 |
Operation to apply. Operation must be a pointer to a function. |
627 |
*/ |
628 |
template <class UnaryFunction> |
629 |
void |
630 |
unaryOp(UnaryFunction operation); |
631 |
|
632 |
/** |
633 |
\brief |
634 |
Perform the unary operation on the data point specified by the given |
635 |
offset. Applies the specified operation to each value in the data |
636 |
point. Operation must be a pointer to a function. |
637 |
|
638 |
Called by escript::unaryOp. |
639 |
|
640 |
\param offset - Input - |
641 |
Apply the operation to data starting at this offset in this view. |
642 |
\param operation - Input - |
643 |
Operation to apply. Must be a pointer to a function. |
644 |
*/ |
645 |
template <class UnaryFunction> |
646 |
void |
647 |
unaryOp(ValueType::size_type offset, |
648 |
UnaryFunction operation); |
649 |
|
650 |
/** |
651 |
\brief |
652 |
Perform the binary operation on the data points specified by the default |
653 |
offsets in this view and in view "right". Applies the specified operation |
654 |
to corresponding values in both data points. Operation must be a pointer |
655 |
to a function. |
656 |
|
657 |
Called by escript::binaryOp. |
658 |
|
659 |
\param right - Input - |
660 |
View to act as RHS in given binary operation. |
661 |
\param operation - Input - |
662 |
Operation to apply. Must be a pointer to a function. |
663 |
*/ |
664 |
template <class BinaryFunction> |
665 |
void |
666 |
binaryOp(const DataArrayView& right, |
667 |
BinaryFunction operation); |
668 |
|
669 |
/** |
670 |
\brief |
671 |
Perform the binary operation on the data points specified by the given |
672 |
offsets in this view and in view "right". Applies the specified operation |
673 |
to corresponding values in both data points. Operation must be a pointer |
674 |
to a function. |
675 |
|
676 |
Called by escript::binaryOp. |
677 |
|
678 |
\param leftOffset - Input - |
679 |
Apply the operation to data starting at this offset in this view. |
680 |
\param right - Input - |
681 |
View to act as RHS in given binary operation. |
682 |
\param rightOffset - Input - |
683 |
Apply the operation to data starting at this offset in right. |
684 |
\param operation - Input - |
685 |
Operation to apply. Must be a pointer to a function. |
686 |
*/ |
687 |
template <class BinaryFunction> |
688 |
void |
689 |
binaryOp(ValueType::size_type leftOffset, |
690 |
const DataArrayView& right, |
691 |
ValueType::size_type rightOffset, |
692 |
BinaryFunction operation); |
693 |
|
694 |
/** |
695 |
\brief |
696 |
Perform the binary operation on the data point specified by the default |
697 |
offset in this view using the scalar value "right". Applies the specified |
698 |
operation to values in the data point. Operation must be a pointer to |
699 |
a function. |
700 |
|
701 |
Called by escript::binaryOp. |
702 |
|
703 |
\param right - Input - |
704 |
Value to act as RHS in given binary operation. |
705 |
\param operation - Input - |
706 |
Operation to apply. Must be a pointer to a function. |
707 |
*/ |
708 |
template <class BinaryFunction> |
709 |
void |
710 |
binaryOp(double right, |
711 |
BinaryFunction operation); |
712 |
|
713 |
/** |
714 |
\brief |
715 |
Perform the binary operation on the data point specified by the given |
716 |
offset in this view using the scalar value "right". Applies the specified |
717 |
operation to values in the data point. Operation must be a pointer |
718 |
to a function. |
719 |
|
720 |
Called by escript::binaryOp. |
721 |
|
722 |
\param offset - Input - |
723 |
Apply the operation to data starting at this offset in this view. |
724 |
\param right - Input - |
725 |
Value to act as RHS in given binary operation. |
726 |
\param operation - Input - |
727 |
Operation to apply. Must be a pointer to a function. |
728 |
*/ |
729 |
template <class BinaryFunction> |
730 |
void |
731 |
binaryOp(ValueType::size_type offset, |
732 |
double right, |
733 |
BinaryFunction operation); |
734 |
|
735 |
/** |
736 |
\brief |
737 |
Perform the given data point reduction operation on the data point |
738 |
specified by the default offset into the view. Reduces all elements of |
739 |
the data point using the given operation, returning the result as a |
740 |
scalar. Operation must be a pointer to a function. |
741 |
|
742 |
Called by escript::algorithm. |
743 |
|
744 |
\param operation - Input - |
745 |
Operation to apply. Must be a pointer to a function. |
746 |
*/ |
747 |
template <class BinaryFunction> |
748 |
double |
749 |
reductionOp(BinaryFunction operation, |
750 |
double initial_value) const; |
751 |
|
752 |
/** |
753 |
\brief |
754 |
Perform the given data point reduction operation on the data point |
755 |
specified by the given offset into the view. Reduces all elements of |
756 |
the data point using the given operation, returning the result as a |
757 |
scalar. Operation must be a pointer to a function. |
758 |
|
759 |
Called by escript::algorithm. |
760 |
|
761 |
\param offset - Input - |
762 |
Apply the operation to data starting at this offset in this view. |
763 |
\param operation - Input - |
764 |
Operation to apply. Must be a pointer to a function. |
765 |
*/ |
766 |
template <class BinaryFunction> |
767 |
double |
768 |
reductionOp(ValueType::size_type offset, |
769 |
BinaryFunction operation, |
770 |
double initial_value) const; |
771 |
|
772 |
/** |
773 |
\brief |
774 |
solves a local eigenvalue problem |
775 |
|
776 |
\param in - Input - matrix |
777 |
\param inOffset - Input - offset into in |
778 |
\param ev - Output - The eigenvalues |
779 |
\param inOffset - Input - offset into ev |
780 |
*/ |
781 |
static |
782 |
inline |
783 |
void |
784 |
DataArrayView::eigenvalues(DataArrayView& in, |
785 |
ValueType::size_type inOffset, |
786 |
DataArrayView& ev, |
787 |
ValueType::size_type evOffset) |
788 |
{ |
789 |
double in00,in10,in20,in01,in11,in21,in02,in12,in22; |
790 |
double ev0,ev1,ev2; |
791 |
int s=in.getShape()[0]; |
792 |
if (s==1) { |
793 |
in00=(*(in.m_data))[inOffset+in.index(0,0)]; |
794 |
eigenvalues1(in00,&ev0); |
795 |
(*(ev.m_data))[evOffset+ev.index(0)]=ev0; |
796 |
|
797 |
} else if (s==2) { |
798 |
in00=(*(in.m_data))[inOffset+in.index(0,0)]; |
799 |
in10=(*(in.m_data))[inOffset+in.index(1,0)]; |
800 |
in01=(*(in.m_data))[inOffset+in.index(0,1)]; |
801 |
in11=(*(in.m_data))[inOffset+in.index(1,1)]; |
802 |
eigenvalues2(in00,(in01+in10)/2.,in11,&ev0,&ev1); |
803 |
(*(ev.m_data))[evOffset+ev.index(0)]=ev0; |
804 |
(*(ev.m_data))[evOffset+ev.index(1)]=ev1; |
805 |
|
806 |
} else if (s==3) { |
807 |
in00=(*(in.m_data))[inOffset+in.index(0,0)]; |
808 |
in10=(*(in.m_data))[inOffset+in.index(1,0)]; |
809 |
in20=(*(in.m_data))[inOffset+in.index(2,0)]; |
810 |
in01=(*(in.m_data))[inOffset+in.index(0,1)]; |
811 |
in11=(*(in.m_data))[inOffset+in.index(1,1)]; |
812 |
in21=(*(in.m_data))[inOffset+in.index(2,1)]; |
813 |
in02=(*(in.m_data))[inOffset+in.index(0,2)]; |
814 |
in12=(*(in.m_data))[inOffset+in.index(1,2)]; |
815 |
in22=(*(in.m_data))[inOffset+in.index(2,2)]; |
816 |
eigenvalues3(in00,(in01+in10)/2.,(in02+in20)/2.,in11,(in21+in12)/2.,in22, |
817 |
&ev0,&ev1,&ev2); |
818 |
(*(ev.m_data))[evOffset+ev.index(0)]=ev0; |
819 |
(*(ev.m_data))[evOffset+ev.index(1)]=ev1; |
820 |
(*(ev.m_data))[evOffset+ev.index(2)]=ev2; |
821 |
|
822 |
} |
823 |
} |
824 |
|
825 |
/** |
826 |
\brief |
827 |
solves a local eigenvalue problem |
828 |
|
829 |
\param in - Input - matrix |
830 |
\param inOffset - Input - offset into in |
831 |
\param ev - Output - The eigenvalues |
832 |
\param evOffset - Input - offset into ev |
833 |
\param V - Output - The eigenvectors |
834 |
\param VOffset - Input - offset into V |
835 |
\param tol - Input - eigenvalues with relative difference tol are treated as equal |
836 |
*/ |
837 |
static |
838 |
inline |
839 |
void |
840 |
DataArrayView::eigenvalues_and_eigenvectors(DataArrayView& in, |
841 |
ValueType::size_type inOffset, |
842 |
DataArrayView& ev, |
843 |
ValueType::size_type evOffset, |
844 |
DataArrayView& V, |
845 |
ValueType::size_type VOffset, |
846 |
const double tol=1.e-13) |
847 |
{ |
848 |
double in00,in10,in20,in01,in11,in21,in02,in12,in22; |
849 |
double V00,V10,V20,V01,V11,V21,V02,V12,V22; |
850 |
double ev0,ev1,ev2; |
851 |
int s=in.getShape()[0]; |
852 |
if (s==1) { |
853 |
in00=(*(in.m_data))[inOffset+in.index(0,0)]; |
854 |
eigenvalues_and_eigenvectors1(in00,&ev0,&V00,tol); |
855 |
(*(ev.m_data))[evOffset+ev.index(0)]=ev0; |
856 |
(*(V.m_data))[inOffset+V.index(0,0)]=V00; |
857 |
} else if (s==2) { |
858 |
in00=(*(in.m_data))[inOffset+in.index(0,0)]; |
859 |
in10=(*(in.m_data))[inOffset+in.index(1,0)]; |
860 |
in01=(*(in.m_data))[inOffset+in.index(0,1)]; |
861 |
in11=(*(in.m_data))[inOffset+in.index(1,1)]; |
862 |
eigenvalues_and_eigenvectors2(in00,(in01+in10)/2.,in11, |
863 |
&ev0,&ev1,&V00,&V10,&V01,&V11,tol); |
864 |
(*(ev.m_data))[evOffset+ev.index(0)]=ev0; |
865 |
(*(ev.m_data))[evOffset+ev.index(1)]=ev1; |
866 |
(*(V.m_data))[inOffset+V.index(0,0)]=V00; |
867 |
(*(V.m_data))[inOffset+V.index(1,0)]=V10; |
868 |
(*(V.m_data))[inOffset+V.index(0,1)]=V01; |
869 |
(*(V.m_data))[inOffset+V.index(1,1)]=V11; |
870 |
} else if (s==3) { |
871 |
in00=(*(in.m_data))[inOffset+in.index(0,0)]; |
872 |
in10=(*(in.m_data))[inOffset+in.index(1,0)]; |
873 |
in20=(*(in.m_data))[inOffset+in.index(2,0)]; |
874 |
in01=(*(in.m_data))[inOffset+in.index(0,1)]; |
875 |
in11=(*(in.m_data))[inOffset+in.index(1,1)]; |
876 |
in21=(*(in.m_data))[inOffset+in.index(2,1)]; |
877 |
in02=(*(in.m_data))[inOffset+in.index(0,2)]; |
878 |
in12=(*(in.m_data))[inOffset+in.index(1,2)]; |
879 |
in22=(*(in.m_data))[inOffset+in.index(2,2)]; |
880 |
eigenvalues_and_eigenvectors3(in00,(in01+in10)/2.,(in02+in20)/2.,in11,(in21+in12)/2.,in22, |
881 |
&ev0,&ev1,&ev2, |
882 |
&V00,&V10,&V20,&V01,&V11,&V21,&V02,&V12,&V22,tol); |
883 |
(*(ev.m_data))[evOffset+ev.index(0)]=ev0; |
884 |
(*(ev.m_data))[evOffset+ev.index(1)]=ev1; |
885 |
(*(ev.m_data))[evOffset+ev.index(2)]=ev2; |
886 |
(*(V.m_data))[inOffset+V.index(0,0)]=V00; |
887 |
(*(V.m_data))[inOffset+V.index(1,0)]=V10; |
888 |
(*(V.m_data))[inOffset+V.index(2,0)]=V20; |
889 |
(*(V.m_data))[inOffset+V.index(0,1)]=V01; |
890 |
(*(V.m_data))[inOffset+V.index(1,1)]=V11; |
891 |
(*(V.m_data))[inOffset+V.index(2,1)]=V21; |
892 |
(*(V.m_data))[inOffset+V.index(0,2)]=V02; |
893 |
(*(V.m_data))[inOffset+V.index(1,2)]=V12; |
894 |
(*(V.m_data))[inOffset+V.index(2,2)]=V22; |
895 |
|
896 |
} |
897 |
} |
898 |
/** |
899 |
\brief |
900 |
Perform a matrix multiply of the given views. |
901 |
This is purely a utility method and has no bearing on this view. |
902 |
|
903 |
NB: Only multiplies together the two given views, ie: two data-points, |
904 |
would need to call this over all data-points to multiply the entire |
905 |
Data objects involved. |
906 |
|
907 |
\param left - Input - The left hand side. |
908 |
\param right - Input - The right hand side. |
909 |
\param result - Output - The result of the operation. |
910 |
*/ |
911 |
static |
912 |
void |
913 |
matMult(const DataArrayView& left, |
914 |
const DataArrayView& right, |
915 |
DataArrayView& result); |
916 |
|
917 |
/** |
918 |
\brief |
919 |
Determine the shape of the result array for a matrix multiplication |
920 |
of the given views. |
921 |
This is purely a utility method and has no bearing on this view. |
922 |
*/ |
923 |
static |
924 |
ShapeType |
925 |
determineResultShape(const DataArrayView& left, |
926 |
const DataArrayView& right); |
927 |
|
928 |
protected: |
929 |
|
930 |
private: |
931 |
|
932 |
// |
933 |
// The maximum rank allowed for the shape of any view. |
934 |
static const int m_maxRank=4; |
935 |
|
936 |
// |
937 |
// The data values for the view. |
938 |
// NOTE: This points to data external to the view. |
939 |
// This is just a pointer to an array of ValueType. |
940 |
ValueType* m_data; |
941 |
|
942 |
// |
943 |
// The offset into the data array used by different views. |
944 |
// This is simply an integer specifying a position in the data array |
945 |
// pointed to by m_data. |
946 |
ValueType::size_type m_offset; |
947 |
|
948 |
// |
949 |
// The shape of the data. |
950 |
// This is simply an STL vector specifying the lengths of each dimension |
951 |
// of the shape as ints. |
952 |
ShapeType m_shape; |
953 |
|
954 |
// |
955 |
// The number of values needed for the array. |
956 |
// This can be derived from m_shape by multiplying the size of each dimension, but |
957 |
// is stored here for convenience. |
958 |
int m_noValues; |
959 |
|
960 |
}; |
961 |
|
962 |
bool operator==(const DataArrayView& left, const DataArrayView& right); |
963 |
bool operator!=(const DataArrayView& left, const DataArrayView& right); |
964 |
|
965 |
/** |
966 |
\brief |
967 |
Modify region to copy from in order to |
968 |
deal with the case where one range in the region contains identical indexes, |
969 |
eg: <<1,1><0,3><0,3>> |
970 |
This situation implies we want to copy from an object with rank greater than that of this |
971 |
object. eg: we want to copy the values from a two dimensional slice out of a three |
972 |
dimensional object into a two dimensional object. |
973 |
We do this by taking a slice from the other object where one dimension of |
974 |
the slice region is of size 1. So in the above example, we modify the above |
975 |
region like so: <<1,2><0,3><0,3>> and take this slice. |
976 |
*/ |
977 |
DataArrayView::RegionLoopRangeType |
978 |
getSliceRegionLoopRange(const DataArrayView::RegionType& region); |
979 |
|
980 |
/** |
981 |
\brief |
982 |
Calculate the slice range from the given python key object |
983 |
Used by DataArrayView::getSliceRegion. |
984 |
Returns the python slice object key as a pair of ints where the first |
985 |
member is the start and the second member is the end. the presence of a possible |
986 |
step attribute with value different from one will throw an exception |
987 |
|
988 |
/param key - Input - key object specifying slice range. |
989 |
*/ |
990 |
std::pair<int,int> |
991 |
getSliceRange(const boost::python::object& key, |
992 |
const int shape); |
993 |
|
994 |
/** |
995 |
Inline function definitions. |
996 |
*/ |
997 |
|
998 |
template <class UnaryFunction> |
999 |
inline |
1000 |
void |
1001 |
DataArrayView::unaryOp(UnaryFunction operation) |
1002 |
{ |
1003 |
unaryOp(m_offset,operation); |
1004 |
} |
1005 |
|
1006 |
template <class UnaryFunction> |
1007 |
inline |
1008 |
void |
1009 |
DataArrayView::unaryOp(ValueType::size_type offset, |
1010 |
UnaryFunction operation) |
1011 |
{ |
1012 |
EsysAssert((!isEmpty()&&checkOffset(offset)), |
1013 |
"Error - Couldn't perform unaryOp due to insufficient storage."); |
1014 |
for (ValueType::size_type i=0;i<noValues();i++) { |
1015 |
(*m_data)[offset+i]=operation((*m_data)[offset+i]); |
1016 |
} |
1017 |
} |
1018 |
|
1019 |
template <class BinaryFunction> |
1020 |
inline |
1021 |
void |
1022 |
DataArrayView::binaryOp(const DataArrayView& right, |
1023 |
BinaryFunction operation) |
1024 |
{ |
1025 |
binaryOp(m_offset,right,right.getOffset(),operation); |
1026 |
} |
1027 |
|
1028 |
template <class BinaryFunction> |
1029 |
inline |
1030 |
void |
1031 |
DataArrayView::binaryOp(ValueType::size_type leftOffset, |
1032 |
const DataArrayView& right, |
1033 |
ValueType::size_type rightOffset, |
1034 |
BinaryFunction operation) |
1035 |
{ |
1036 |
EsysAssert(getShape()==right.getShape(), |
1037 |
"Error - Couldn't perform binaryOp due to shape mismatch,"); |
1038 |
EsysAssert((!isEmpty()&&checkOffset(leftOffset)), |
1039 |
"Error - Couldn't perform binaryOp due to insufficient storage in left object."); |
1040 |
EsysAssert((!right.isEmpty()&&right.checkOffset(rightOffset)), |
1041 |
"Error - Couldn't perform binaryOp due to insufficient storage in right object."); |
1042 |
for (ValueType::size_type i=0;i<noValues();i++) { |
1043 |
(*m_data)[leftOffset+i]=operation((*m_data)[leftOffset+i],(*right.m_data)[rightOffset+i]); |
1044 |
} |
1045 |
} |
1046 |
|
1047 |
template <class BinaryFunction> |
1048 |
inline |
1049 |
void |
1050 |
DataArrayView::binaryOp(double right, |
1051 |
BinaryFunction operation) |
1052 |
{ |
1053 |
binaryOp(m_offset,right,operation); |
1054 |
} |
1055 |
|
1056 |
template <class BinaryFunction> |
1057 |
inline |
1058 |
void |
1059 |
DataArrayView::binaryOp(ValueType::size_type offset, |
1060 |
double right, |
1061 |
BinaryFunction operation) |
1062 |
{ |
1063 |
EsysAssert((!isEmpty()&&checkOffset(offset)), |
1064 |
"Error - Couldn't perform binaryOp due to insufficient storage in left object."); |
1065 |
for (ValueType::size_type i=0;i<noValues();i++) { |
1066 |
(*m_data)[offset+i]=operation((*m_data)[offset+i],right); |
1067 |
} |
1068 |
} |
1069 |
|
1070 |
template <class BinaryFunction> |
1071 |
inline |
1072 |
double |
1073 |
DataArrayView::reductionOp(BinaryFunction operation, |
1074 |
double initial_value) const |
1075 |
{ |
1076 |
return reductionOp(m_offset,operation,initial_value); |
1077 |
} |
1078 |
|
1079 |
template <class BinaryFunction> |
1080 |
inline |
1081 |
double |
1082 |
DataArrayView::reductionOp(ValueType::size_type offset, |
1083 |
BinaryFunction operation, |
1084 |
double initial_value) const |
1085 |
{ |
1086 |
EsysAssert((!isEmpty()&&checkOffset(offset)), |
1087 |
"Error - Couldn't perform reductionOp due to insufficient storage."); |
1088 |
double current_value=initial_value; |
1089 |
for (ValueType::size_type i=0;i<noValues();i++) { |
1090 |
current_value=operation(current_value,(*m_data)[offset+i]); |
1091 |
} |
1092 |
return current_value; |
1093 |
} |
1094 |
|
1095 |
inline |
1096 |
DataArrayView::ValueType::size_type |
1097 |
DataArrayView::relIndex() const |
1098 |
{ |
1099 |
EsysAssert((getRank()==0),"Incorrect number of indices for the rank of this object."); |
1100 |
return 0; |
1101 |
} |
1102 |
|
1103 |
inline |
1104 |
DataArrayView::ValueType::size_type |
1105 |
DataArrayView::index() const |
1106 |
{ |
1107 |
EsysAssert((getRank()==0),"Incorrect number of indices for the rank of this object."); |
1108 |
return (m_offset); |
1109 |
} |
1110 |
|
1111 |
inline |
1112 |
DataArrayView::ValueType::size_type |
1113 |
DataArrayView::relIndex(ValueType::size_type i) const |
1114 |
{ |
1115 |
EsysAssert((getRank()==1),"Incorrect number of indices for the rank of this object."); |
1116 |
EsysAssert((i < noValues(m_shape)), "Error - Invalid index."); |
1117 |
return i; |
1118 |
} |
1119 |
|
1120 |
inline |
1121 |
DataArrayView::ValueType::size_type |
1122 |
DataArrayView::index(ValueType::size_type i) const |
1123 |
{ |
1124 |
EsysAssert((getRank()==1),"Incorrect number of indices for the rank of this object."); |
1125 |
EsysAssert((i < noValues(m_shape)), "Error - Invalid index."); |
1126 |
return (m_offset+i); |
1127 |
} |
1128 |
|
1129 |
inline |
1130 |
DataArrayView::ValueType::size_type |
1131 |
DataArrayView::relIndex(ValueType::size_type i, |
1132 |
ValueType::size_type j) const |
1133 |
{ |
1134 |
EsysAssert((getRank()==2),"Incorrect number of indices for the rank of this object."); |
1135 |
ValueType::size_type temp=i+j*m_shape[0]; |
1136 |
EsysAssert((temp < noValues(m_shape)), "Error - Invalid index."); |
1137 |
return temp; |
1138 |
} |
1139 |
|
1140 |
inline |
1141 |
DataArrayView::ValueType::size_type |
1142 |
DataArrayView::index(ValueType::size_type i, |
1143 |
ValueType::size_type j) const |
1144 |
{ |
1145 |
EsysAssert((getRank()==2),"Incorrect number of indices for the rank of this object."); |
1146 |
ValueType::size_type temp=i+j*m_shape[0]; |
1147 |
EsysAssert((temp < noValues(m_shape)), "Error - Invalid index."); |
1148 |
return (m_offset+temp); |
1149 |
} |
1150 |
|
1151 |
inline |
1152 |
DataArrayView::ValueType::size_type |
1153 |
DataArrayView::relIndex(ValueType::size_type i, |
1154 |
ValueType::size_type j, |
1155 |
ValueType::size_type k) const |
1156 |
{ |
1157 |
EsysAssert((getRank()==3),"Incorrect number of indices for the rank of this object."); |
1158 |
ValueType::size_type temp=i+j*m_shape[0]+k*m_shape[1]*m_shape[0]; |
1159 |
EsysAssert((temp < noValues(m_shape)), "Error - Invalid index."); |
1160 |
return temp; |
1161 |
} |
1162 |
|
1163 |
inline |
1164 |
DataArrayView::ValueType::size_type |
1165 |
DataArrayView::index(ValueType::size_type i, |
1166 |
ValueType::size_type j, |
1167 |
ValueType::size_type k) const |
1168 |
{ |
1169 |
EsysAssert((getRank()==3),"Incorrect number of indices for the rank of this object."); |
1170 |
ValueType::size_type temp=i+j*m_shape[0]+k*m_shape[1]*m_shape[0]; |
1171 |
EsysAssert((temp < noValues(m_shape)), "Error - Invalid index."); |
1172 |
return (m_offset+temp); |
1173 |
} |
1174 |
|
1175 |
inline |
1176 |
DataArrayView::ValueType::size_type |
1177 |
DataArrayView::relIndex(ValueType::size_type i, |
1178 |
ValueType::size_type j, |
1179 |
ValueType::size_type k, |
1180 |
ValueType::size_type m) const |
1181 |
{ |
1182 |
EsysAssert((getRank()==4),"Incorrect number of indices for the rank of this object."); |
1183 |
ValueType::size_type temp=i+j*m_shape[0]+k*m_shape[1]*m_shape[0]+m*m_shape[2]*m_shape[1]*m_shape[0]; |
1184 |
EsysAssert((temp < noValues(m_shape)), "Error - Invalid index."); |
1185 |
return temp; |
1186 |
} |
1187 |
|
1188 |
inline |
1189 |
DataArrayView::ValueType::size_type |
1190 |
DataArrayView::index(ValueType::size_type i, |
1191 |
ValueType::size_type j, |
1192 |
ValueType::size_type k, |
1193 |
ValueType::size_type m) const |
1194 |
{ |
1195 |
EsysAssert((getRank()==4),"Incorrect number of indices for the rank of this object."); |
1196 |
ValueType::size_type temp=i+j*m_shape[0]+k*m_shape[1]*m_shape[0]+m*m_shape[2]*m_shape[1]*m_shape[0]; |
1197 |
EsysAssert((temp < noValues(m_shape)), "Error - Invalid index."); |
1198 |
return (m_offset+temp); |
1199 |
} |
1200 |
|
1201 |
inline |
1202 |
DataArrayView::ValueType::reference |
1203 |
DataArrayView::operator()() |
1204 |
{ |
1205 |
return (*m_data)[index()]; |
1206 |
} |
1207 |
|
1208 |
inline |
1209 |
DataArrayView::ValueType::const_reference |
1210 |
DataArrayView::operator()() const |
1211 |
{ |
1212 |
return (*m_data)[index()]; |
1213 |
} |
1214 |
|
1215 |
inline |
1216 |
DataArrayView::ValueType::reference |
1217 |
DataArrayView::operator()(ValueType::size_type i) |
1218 |
{ |
1219 |
return (*m_data)[index(i)]; |
1220 |
} |
1221 |
|
1222 |
inline |
1223 |
DataArrayView::ValueType::const_reference |
1224 |
DataArrayView::operator()(ValueType::size_type i) const |
1225 |
{ |
1226 |
return (*m_data)[index(i)]; |
1227 |
} |
1228 |
|
1229 |
inline |
1230 |
DataArrayView::ValueType::reference |
1231 |
DataArrayView::operator()(ValueType::size_type i, |
1232 |
ValueType::size_type j) |
1233 |
{ |
1234 |
return (*m_data)[index(i,j)]; |
1235 |
} |
1236 |
|
1237 |
inline |
1238 |
DataArrayView::ValueType::const_reference |
1239 |
DataArrayView::operator()(ValueType::size_type i, |
1240 |
ValueType::size_type j) const |
1241 |
{ |
1242 |
return (*m_data)[index(i,j)]; |
1243 |
} |
1244 |
|
1245 |
inline |
1246 |
DataArrayView::ValueType::reference |
1247 |
DataArrayView::operator()(ValueType::size_type i, |
1248 |
ValueType::size_type j, |
1249 |
ValueType::size_type k) |
1250 |
{ |
1251 |
return (*m_data)[index(i,j,k)]; |
1252 |
} |
1253 |
|
1254 |
inline |
1255 |
DataArrayView::ValueType::const_reference |
1256 |
DataArrayView::operator()(ValueType::size_type i, |
1257 |
ValueType::size_type j, |
1258 |
ValueType::size_type k) const |
1259 |
{ |
1260 |
return (*m_data)[index(i,j,k)]; |
1261 |
} |
1262 |
|
1263 |
inline |
1264 |
DataArrayView::ValueType::reference |
1265 |
DataArrayView::operator()(ValueType::size_type i, |
1266 |
ValueType::size_type j, |
1267 |
ValueType::size_type k, |
1268 |
ValueType::size_type m) |
1269 |
{ |
1270 |
return (*m_data)[index(i,j,k,m)]; |
1271 |
} |
1272 |
|
1273 |
inline |
1274 |
DataArrayView::ValueType::const_reference |
1275 |
DataArrayView::operator()(ValueType::size_type i, |
1276 |
ValueType::size_type j, |
1277 |
ValueType::size_type k, |
1278 |
ValueType::size_type m) const |
1279 |
{ |
1280 |
return (*m_data)[index(i,j,k,m)]; |
1281 |
} |
1282 |
|
1283 |
} // end of namespace |
1284 |
|
1285 |
#endif |