/[escript]/trunk/escript/src/escriptcpp.cpp
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Annotation of /trunk/escript/src/escriptcpp.cpp

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Revision 698 - (hide annotations)
Fri Mar 31 04:52:55 2006 UTC (13 years, 5 months ago) by gross
File size: 10358 byte(s)
test with tagged data pass now
1 jgs 102 //$Id$
2 elspeth 615 /*
3     ************************************************************
4     * Copyright 2006 by ACcESS MNRF *
5     * *
6     * http://www.access.edu.au *
7     * Primary Business: Queensland, Australia *
8     * Licensed under the Open Software License version 3.0 *
9     * http://www.opensource.org/licenses/osl-3.0.php *
10     * *
11     ************************************************************
12     */
13 jgs 102
14 jgs 474 #include "Data.h"
15     #include "FunctionSpace.h"
16     #include "FunctionSpaceFactory.h"
17     #include "DataFactory.h"
18     #include "AbstractContinuousDomain.h"
19     #include "AbstractDomain.h"
20     #include "Utils.h"
21 jgs 480 #include "AbstractSystemMatrix.h"
22 jgs 474
23 robwdcock 682 #include "esysUtils/esysExceptionTranslator.h"
24 jgs 102
25     #include <boost/python.hpp>
26     #include <boost/python/module.hpp>
27     #include <boost/python/def.hpp>
28     #include <boost/python/object.hpp>
29     #include <boost/python/tuple.hpp>
30 gross 285 #include <boost/python/numeric.hpp>
31    
32 jgs 102 using namespace boost::python;
33    
34 jgs 121 /*! \mainpage Esys Documentation
35     *
36     * \version 1.0.0
37     *
38     * - \ref escript
39     *
40     * - \ref esys_exception "Esys Exception"
41     *
42     * - \ref finley
43     *
44 cochrane 358 * - <a href=http://iservo.edu.au/esys/epydoc/index.html>Python module documentation (epydoc generated)</a>
45 jgs 122 *
46 jgs 121 */
47 jgs 102
48 jgs 121 /*! \page escript Escript
49     * Escript is the python module that contains the interfaces
50     * to the C++ side of escript.
51     *
52     * \version 1.0.0
53     *
54     * \section class_desc Class Description:
55     * Data
56     *
57     * \section class_limits Class Limitations:
58     * None
59     *
60     * \section class_conds Class Conditions of Use:
61     * None
62     *
63     * \section class_throws Throws:
64     * None
65     *
66     */
67 jgs 102
68     BOOST_PYTHON_MODULE(escriptcpp)
69     {
70 gross 391 def("setNumberOfThreads",escript::setNumberOfThreads);
71     def("getNumberOfThreads",escript::getNumberOfThreads);
72 jgs 102
73     //
74     // Interface for AbstractDomain
75     //
76     class_<escript::AbstractDomain>("Domain",no_init)
77     .def("getX",&escript::AbstractDomain::getX)
78     .def("getNormal",&escript::AbstractDomain::getNormal)
79     .def("getSize",&escript::AbstractDomain::getSize)
80 jgs 153 .def("saveVTK",&escript::AbstractDomain::saveVTK)
81     .def("saveDX",&escript::AbstractDomain::saveDX)
82 jgs 102 .def(self == self)
83     .def(self != self);
84    
85     //
86     // Interface for AbstractContinuousDomain
87     //
88     class_<escript::AbstractContinuousDomain, bases<escript::AbstractDomain> >("ContinuousDomain",no_init)
89     .def("getSystemMatrixTypeId",&escript::AbstractContinuousDomain::getSystemMatrixTypeId);
90    
91     //
92     // Interface for FunctionSpace
93     //
94     class_<escript::FunctionSpace>("FunctionSpace",init<>())
95     .def("getDim",&escript::FunctionSpace::getDim)
96 jgs 153 .def("getDomain",&escript::FunctionSpace::getDomain,return_internal_reference<>())
97 jgs 102 .def("getX",&escript::FunctionSpace::getX)
98     .def("getNormal",&escript::FunctionSpace::getNormal)
99     .def("getSize",&escript::FunctionSpace::getSize)
100 jgs 149 .def("getTagFromDataPointNo",&escript::FunctionSpace::getTagFromDataPointNo)
101 jgs 147 .def("__str__",&escript::FunctionSpace::toString)
102 jgs 102 .def(self == self)
103     .def(self != self);
104     //
105     // Interface for Data
106     //
107 jgs 149 class_<escript::Data>("Data","TEST DOCUMENTATION",init<>())
108 jgs 102 // various constructors for Data objects
109     .def(init<const numeric::array&, optional<const escript::FunctionSpace&, bool> >(args("value","what","expand")))
110     .def(init<const object&, optional<const escript::FunctionSpace&, bool> >(args("value","what","expand")))
111     .def(init<const double, const tuple&, optional<const escript::FunctionSpace&, bool> >(args("value","shape","what","expand")))
112     .def(init<const escript::Data&, const escript::FunctionSpace&>(args("value","what")))
113     .def(init<const escript::Data&>())
114     // Note for Lutz, Need to specify the call policy in order to return a
115     // reference. In this case return_internal_reference.
116 gross 285 .def("__str__",&escript::Data::toString)
117 jgs 102 .def("getDomain",&escript::Data::getDomain,return_internal_reference<>())
118     .def("getFunctionSpace",&escript::Data::getFunctionSpace,return_internal_reference<>())
119     .def("isEmpty",&escript::Data::isEmpty)
120     .def("getShape",&escript::Data::getShapeTuple)
121     .def("getRank",&escript::Data::getDataPointRank)
122     .def("copyWithMask",&escript::Data::copyWithMask)
123     .def("setTaggedValue",&escript::Data::setTaggedValue)
124 jgs 110 .def("setRefValue",&escript::Data::setRefValue)
125     .def("getRefValue",&escript::Data::getRefValue)
126 jgs 119 .def("expand",&escript::Data::expand)
127     .def("tag",&escript::Data::tag)
128 jgs 126 .def("copy",&escript::Data::copy)
129 jgs 117 .def("convertToNumArray",&escript::Data::convertToNumArray)
130 jgs 121 .def("convertToNumArrayFromSampleNo",&escript::Data::convertToNumArrayFromSampleNo)
131     .def("convertToNumArrayFromDPNo",&escript::Data::convertToNumArrayFromDPNo)
132 jgs 126 .def("fillFromNumArray",&escript::Data::fillFromNumArray)
133 gross 285 .def("interpolate",&escript::Data::interpolate)
134     .def("mindp",&escript::Data::mindp)
135     .def("saveDX",&escript::Data::saveDX)
136     .def("saveVTK",&escript::Data::saveVTK)
137 jgs 149 .def("getTagNumber",&escript::Data::getTagNumber)
138 jgs 119 .def("archiveData",&escript::Data::archiveData)
139     .def("extractData",&escript::Data::extractData)
140 gross 285 // Unary functions for Data
141     .def("_interpolate",&escript::Data::interpolate)
142     .def("_grad",&escript::Data::gradOn)
143     .def("_grad",&escript::Data::grad)
144     .def("_transpose",&escript::Data::transpose)
145     .def("_trace",&escript::Data::trace)
146     .def("_maxval",&escript::Data::maxval)
147     .def("_minval",&escript::Data::minval)
148 gross 698 .def("_wherePositive",&escript::Data::wherePositive)
149     .def("_whereNegative",&escript::Data::whereNegative)
150     .def("_whereNonNegative",&escript::Data::whereNonNegative)
151     .def("_whereNonPositive",&escript::Data::whereNonPositive)
152 jgs 571 .def("_whereZero",&escript::Data::whereZero,(arg("tol")=0.0))
153     .def("_whereNonZero",&escript::Data::whereNonZero,(arg("tol")=0.0))
154 gross 285 .def("_sin",&escript::Data::sin)
155     .def("_cos",&escript::Data::cos)
156     .def("_tan",&escript::Data::tan)
157     .def("_asin",&escript::Data::asin)
158     .def("_acos",&escript::Data::acos)
159     .def("_atan",&escript::Data::atan)
160     .def("_sinh",&escript::Data::sinh)
161     .def("_cosh",&escript::Data::cosh)
162     .def("_tanh",&escript::Data::tanh)
163     .def("_asinh",&escript::Data::asinh)
164     .def("_acosh",&escript::Data::acosh)
165     .def("_atanh",&escript::Data::atanh)
166     .def("_exp",&escript::Data::exp)
167     .def("_sqrt",&escript::Data::sqrt)
168     .def("_log10",&escript::Data::log10)
169     .def("_log",&escript::Data::log)
170     .def("_sign",&escript::Data::sign)
171 gross 576 .def("_eigenvalues",&escript::Data::eigenvalues)
172     .def("_eigenvalues_and_eigenvectors",&escript::Data::eigenvalues_and_eigenvectors,(arg("tol")=1.e-13))
173 gross 285 // functions returning a single real number:
174     .def("_Lsup",&escript::Data::Lsup)
175     .def("_sup",&escript::Data::sup)
176     .def("_inf",&escript::Data::inf)
177     .def("_integrate",&escript::Data::integrate)
178    
179     // following implements the python abs operator
180 jgs 108 .def("__abs__",&escript::Data::abs)
181 jgs 102 // following implements the python "-" negation operator
182     .def("__neg__",&escript::Data::neg)
183     // following implements the python "+" identity operator
184     .def("__pos__",&escript::Data::pos)
185     // following two functions implement the python [] operator
186     .def("__getitem__",&escript::Data::getItem)
187     .def("__setitem__",&escript::Data::setItemO)
188     .def("__setitem__",&escript::Data::setItemD)
189     // following two functions implement the python ** operator
190     .def("__pow__",&escript::Data::powO)
191     .def("__pow__",&escript::Data::powD)
192     // NOTE:: The order of these declarations is important. Anything
193     // declared before the generic declaration isn't found so the generic
194     // version will be called.
195     .def(self + other<object>())
196     .def(other<object>() + self)
197     .def(self + self)
198 gross 285 .def(self += other<object>())
199     .def(self += self)
200    
201 jgs 102 .def(self - other<object>())
202     .def(other<object>() - self)
203     .def(self - self)
204 gross 285 .def(self -= other<object>())
205     .def(self -= self)
206    
207 jgs 102 .def(self * other<object>())
208     .def(other<object>() * self)
209     .def(self * self)
210 gross 285 .def(self *= other<object>())
211     .def(self *= self)
212    
213 jgs 102 .def(self / other<object>())
214     .def(other<object>() / self)
215     .def(self / self)
216 gross 285 .def(self /= other<object>())
217     .def(self /= self)
218 jgs 102 // Need scope resolution due to a bug either in the compiler or
219     // the boost code. This calls operator << for Data.
220     .def(self_ns::str(self));
221    
222     //
223     // Factory methods for function space
224     //
225     def("ContinuousFunction",escript::continuousFunction);
226     def("Function",escript::function);
227     def("FunctionOnBoundary",escript::functionOnBoundary);
228     def("FunctionOnContactZero",escript::functionOnContactZero);
229     def("FunctionOnContactOne",escript::functionOnContactOne);
230     def("Solution",escript::solution);
231     def("ReducedSolution",escript::reducedSolution);
232     def("DiracDeltaFunction",escript::diracDeltaFunction);
233    
234     //
235     // Factory methods for Data
236     //
237     def("Scalar",escript::Scalar,
238     (arg("value")=0.0,
239     arg("what")=escript::FunctionSpace(),
240     arg("expanded")=false));
241     def("Vector",escript::Vector,
242     (arg("value")=0.0,
243     arg("what")=escript::FunctionSpace(),
244     arg("expanded")=false));
245     def("Tensor",escript::Tensor,
246     (arg("value")=0.0,
247     arg("what")=escript::FunctionSpace(),
248     arg("expanded")=false));
249     def("Tensor3",escript::Tensor3,
250     (arg("value")=0.0,
251     arg("what")=escript::FunctionSpace(),
252     arg("expanded")=false));
253     def("Tensor4",escript::Tensor4,
254     (arg("value")=0.0,
255     arg("what")=escript::FunctionSpace(),
256     arg("expanded")=false));
257    
258     //
259     // Interface for AbstractSystemMatrix
260     //
261     class_<escript::AbstractSystemMatrix>("Operator",init<>())
262     .def("isEmpty",&escript::AbstractSystemMatrix::isEmpty)
263     .def("solve",&escript::AbstractSystemMatrix::solve)
264     .def("of",&escript::AbstractSystemMatrix::vectorMultiply)
265     .def("saveMM",&escript::AbstractSystemMatrix::saveMM)
266 jgs 123 .def("saveHB",&escript::AbstractSystemMatrix::saveHB)
267 jgs 149 .def("resetValues",&escript::AbstractSystemMatrix::resetValues)
268 jgs 102 .def(self*other<escript::Data>());
269    
270     //
271     // Register esysExceptionTranslator
272     //
273     register_exception_translator<esysUtils::EsysException>(&esysUtils::esysExceptionTranslator);
274    
275     }

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