/[escript]/trunk/escript/src/escriptcpp.cpp
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Annotation of /trunk/escript/src/escriptcpp.cpp

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Revision 797 - (hide annotations)
Thu Aug 3 02:03:18 2006 UTC (13 years, 2 months ago) by gross
File size: 10804 byte(s)
function added to manually free unused memory in the memory manager
1 jgs 102 //$Id$
2 elspeth 615 /*
3     ************************************************************
4     * Copyright 2006 by ACcESS MNRF *
5     * *
6     * http://www.access.edu.au *
7     * Primary Business: Queensland, Australia *
8     * Licensed under the Open Software License version 3.0 *
9     * http://www.opensource.org/licenses/osl-3.0.php *
10     * *
11     ************************************************************
12     */
13 jgs 102
14 jgs 474 #include "Data.h"
15     #include "FunctionSpace.h"
16     #include "FunctionSpaceFactory.h"
17     #include "DataFactory.h"
18     #include "AbstractContinuousDomain.h"
19     #include "AbstractDomain.h"
20     #include "Utils.h"
21 jgs 480 #include "AbstractSystemMatrix.h"
22 gross 797 #include "DataVector.h"
23 jgs 474
24 robwdcock 682 #include "esysUtils/esysExceptionTranslator.h"
25 jgs 102
26     #include <boost/python.hpp>
27     #include <boost/python/module.hpp>
28     #include <boost/python/def.hpp>
29     #include <boost/python/object.hpp>
30     #include <boost/python/tuple.hpp>
31 gross 285 #include <boost/python/numeric.hpp>
32    
33 jgs 102 using namespace boost::python;
34    
35 jgs 121 /*! \mainpage Esys Documentation
36     *
37     * \version 1.0.0
38     *
39     * - \ref escript
40     *
41     * - \ref esys_exception "Esys Exception"
42     *
43     * - \ref finley
44     *
45 cochrane 358 * - <a href=http://iservo.edu.au/esys/epydoc/index.html>Python module documentation (epydoc generated)</a>
46 jgs 122 *
47 jgs 121 */
48 jgs 102
49 jgs 121 /*! \page escript Escript
50     * Escript is the python module that contains the interfaces
51     * to the C++ side of escript.
52     *
53     * \version 1.0.0
54     *
55     * \section class_desc Class Description:
56     * Data
57     *
58     * \section class_limits Class Limitations:
59     * None
60     *
61     * \section class_conds Class Conditions of Use:
62     * None
63     *
64     * \section class_throws Throws:
65     * None
66     *
67     */
68 jgs 102
69     BOOST_PYTHON_MODULE(escriptcpp)
70     {
71 gross 391 def("setNumberOfThreads",escript::setNumberOfThreads);
72     def("getNumberOfThreads",escript::getNumberOfThreads);
73 gross 797 def("releaseUnusedMemory",escript::releaseUnusedMemory);
74 jgs 102
75 gross 797
76 jgs 102 //
77     // Interface for AbstractDomain
78     //
79     class_<escript::AbstractDomain>("Domain",no_init)
80     .def("getX",&escript::AbstractDomain::getX)
81     .def("getNormal",&escript::AbstractDomain::getNormal)
82     .def("getSize",&escript::AbstractDomain::getSize)
83 jgs 153 .def("saveVTK",&escript::AbstractDomain::saveVTK)
84     .def("saveDX",&escript::AbstractDomain::saveDX)
85 jgs 102 .def(self == self)
86     .def(self != self);
87    
88     //
89     // Interface for AbstractContinuousDomain
90     //
91     class_<escript::AbstractContinuousDomain, bases<escript::AbstractDomain> >("ContinuousDomain",no_init)
92     .def("getSystemMatrixTypeId",&escript::AbstractContinuousDomain::getSystemMatrixTypeId);
93    
94     //
95     // Interface for FunctionSpace
96     //
97     class_<escript::FunctionSpace>("FunctionSpace",init<>())
98     .def("getDim",&escript::FunctionSpace::getDim)
99 jgs 153 .def("getDomain",&escript::FunctionSpace::getDomain,return_internal_reference<>())
100 jgs 102 .def("getX",&escript::FunctionSpace::getX)
101     .def("getNormal",&escript::FunctionSpace::getNormal)
102     .def("getSize",&escript::FunctionSpace::getSize)
103 gross 767 .def("setTags",&escript::FunctionSpace::setTags)
104 jgs 149 .def("getTagFromDataPointNo",&escript::FunctionSpace::getTagFromDataPointNo)
105 jgs 147 .def("__str__",&escript::FunctionSpace::toString)
106 jgs 102 .def(self == self)
107     .def(self != self);
108     //
109     // Interface for Data
110     //
111 jgs 149 class_<escript::Data>("Data","TEST DOCUMENTATION",init<>())
112 jgs 102 // various constructors for Data objects
113     .def(init<const numeric::array&, optional<const escript::FunctionSpace&, bool> >(args("value","what","expand")))
114     .def(init<const object&, optional<const escript::FunctionSpace&, bool> >(args("value","what","expand")))
115     .def(init<const double, const tuple&, optional<const escript::FunctionSpace&, bool> >(args("value","shape","what","expand")))
116     .def(init<const escript::Data&, const escript::FunctionSpace&>(args("value","what")))
117     .def(init<const escript::Data&>())
118     // Note for Lutz, Need to specify the call policy in order to return a
119     // reference. In this case return_internal_reference.
120 gross 285 .def("__str__",&escript::Data::toString)
121 jgs 102 .def("getDomain",&escript::Data::getDomain,return_internal_reference<>())
122     .def("getFunctionSpace",&escript::Data::getFunctionSpace,return_internal_reference<>())
123     .def("isEmpty",&escript::Data::isEmpty)
124 gross 783 .def("isProtected",&escript::Data::isProtected)
125     .def("setProtection",&escript::Data::setProtection)
126 jgs 102 .def("getShape",&escript::Data::getShapeTuple)
127     .def("getRank",&escript::Data::getDataPointRank)
128     .def("copyWithMask",&escript::Data::copyWithMask)
129     .def("setTaggedValue",&escript::Data::setTaggedValue)
130 jgs 110 .def("setRefValue",&escript::Data::setRefValue)
131     .def("getRefValue",&escript::Data::getRefValue)
132 jgs 119 .def("expand",&escript::Data::expand)
133     .def("tag",&escript::Data::tag)
134 jgs 126 .def("copy",&escript::Data::copy)
135 jgs 117 .def("convertToNumArray",&escript::Data::convertToNumArray)
136 jgs 121 .def("convertToNumArrayFromSampleNo",&escript::Data::convertToNumArrayFromSampleNo)
137     .def("convertToNumArrayFromDPNo",&escript::Data::convertToNumArrayFromDPNo)
138 jgs 126 .def("fillFromNumArray",&escript::Data::fillFromNumArray)
139 gross 285 .def("interpolate",&escript::Data::interpolate)
140     .def("mindp",&escript::Data::mindp)
141     .def("saveDX",&escript::Data::saveDX)
142     .def("saveVTK",&escript::Data::saveVTK)
143 jgs 149 .def("getTagNumber",&escript::Data::getTagNumber)
144 jgs 119 .def("archiveData",&escript::Data::archiveData)
145     .def("extractData",&escript::Data::extractData)
146 gross 285 // Unary functions for Data
147     .def("_interpolate",&escript::Data::interpolate)
148     .def("_grad",&escript::Data::gradOn)
149     .def("_grad",&escript::Data::grad)
150     .def("_transpose",&escript::Data::transpose)
151     .def("_trace",&escript::Data::trace)
152     .def("_maxval",&escript::Data::maxval)
153     .def("_minval",&escript::Data::minval)
154 gross 698 .def("_wherePositive",&escript::Data::wherePositive)
155     .def("_whereNegative",&escript::Data::whereNegative)
156     .def("_whereNonNegative",&escript::Data::whereNonNegative)
157     .def("_whereNonPositive",&escript::Data::whereNonPositive)
158 jgs 571 .def("_whereZero",&escript::Data::whereZero,(arg("tol")=0.0))
159     .def("_whereNonZero",&escript::Data::whereNonZero,(arg("tol")=0.0))
160 gross 285 .def("_sin",&escript::Data::sin)
161     .def("_cos",&escript::Data::cos)
162     .def("_tan",&escript::Data::tan)
163     .def("_asin",&escript::Data::asin)
164     .def("_acos",&escript::Data::acos)
165     .def("_atan",&escript::Data::atan)
166     .def("_sinh",&escript::Data::sinh)
167     .def("_cosh",&escript::Data::cosh)
168     .def("_tanh",&escript::Data::tanh)
169     .def("_asinh",&escript::Data::asinh)
170     .def("_acosh",&escript::Data::acosh)
171     .def("_atanh",&escript::Data::atanh)
172     .def("_exp",&escript::Data::exp)
173     .def("_sqrt",&escript::Data::sqrt)
174     .def("_log10",&escript::Data::log10)
175     .def("_log",&escript::Data::log)
176     .def("_sign",&escript::Data::sign)
177 ksteube 775 .def("_symmetric",&escript::Data::symmetric)
178     .def("_nonsymmetric",&escript::Data::nonsymmetric)
179     .def("_matrixtrace",&escript::Data::matrixtrace)
180 gross 576 .def("_eigenvalues",&escript::Data::eigenvalues)
181     .def("_eigenvalues_and_eigenvectors",&escript::Data::eigenvalues_and_eigenvectors,(arg("tol")=1.e-13))
182 gross 285 // functions returning a single real number:
183     .def("_Lsup",&escript::Data::Lsup)
184     .def("_sup",&escript::Data::sup)
185     .def("_inf",&escript::Data::inf)
186     .def("_integrate",&escript::Data::integrate)
187    
188     // following implements the python abs operator
189 jgs 108 .def("__abs__",&escript::Data::abs)
190 jgs 102 // following implements the python "-" negation operator
191     .def("__neg__",&escript::Data::neg)
192     // following implements the python "+" identity operator
193     .def("__pos__",&escript::Data::pos)
194     // following two functions implement the python [] operator
195     .def("__getitem__",&escript::Data::getItem)
196     .def("__setitem__",&escript::Data::setItemO)
197     .def("__setitem__",&escript::Data::setItemD)
198     // following two functions implement the python ** operator
199     .def("__pow__",&escript::Data::powO)
200     .def("__pow__",&escript::Data::powD)
201 gross 699 .def("__rpow__",&escript::Data::rpowO)
202 jgs 102 // NOTE:: The order of these declarations is important. Anything
203     // declared before the generic declaration isn't found so the generic
204     // version will be called.
205     .def(self + other<object>())
206     .def(other<object>() + self)
207     .def(self + self)
208 gross 285 .def(self += other<object>())
209     .def(self += self)
210    
211 jgs 102 .def(self - other<object>())
212     .def(other<object>() - self)
213     .def(self - self)
214 gross 285 .def(self -= other<object>())
215     .def(self -= self)
216    
217 jgs 102 .def(self * other<object>())
218     .def(other<object>() * self)
219     .def(self * self)
220 gross 285 .def(self *= other<object>())
221     .def(self *= self)
222    
223 jgs 102 .def(self / other<object>())
224     .def(other<object>() / self)
225     .def(self / self)
226 gross 285 .def(self /= other<object>())
227     .def(self /= self)
228 jgs 102 // Need scope resolution due to a bug either in the compiler or
229     // the boost code. This calls operator << for Data.
230     .def(self_ns::str(self));
231    
232     //
233     // Factory methods for function space
234     //
235     def("ContinuousFunction",escript::continuousFunction);
236     def("Function",escript::function);
237     def("FunctionOnBoundary",escript::functionOnBoundary);
238     def("FunctionOnContactZero",escript::functionOnContactZero);
239     def("FunctionOnContactOne",escript::functionOnContactOne);
240     def("Solution",escript::solution);
241     def("ReducedSolution",escript::reducedSolution);
242     def("DiracDeltaFunction",escript::diracDeltaFunction);
243    
244     //
245     // Factory methods for Data
246     //
247     def("Scalar",escript::Scalar,
248     (arg("value")=0.0,
249     arg("what")=escript::FunctionSpace(),
250     arg("expanded")=false));
251     def("Vector",escript::Vector,
252     (arg("value")=0.0,
253     arg("what")=escript::FunctionSpace(),
254     arg("expanded")=false));
255     def("Tensor",escript::Tensor,
256     (arg("value")=0.0,
257     arg("what")=escript::FunctionSpace(),
258     arg("expanded")=false));
259     def("Tensor3",escript::Tensor3,
260     (arg("value")=0.0,
261     arg("what")=escript::FunctionSpace(),
262     arg("expanded")=false));
263     def("Tensor4",escript::Tensor4,
264     (arg("value")=0.0,
265     arg("what")=escript::FunctionSpace(),
266     arg("expanded")=false));
267    
268     //
269     // Interface for AbstractSystemMatrix
270     //
271     class_<escript::AbstractSystemMatrix>("Operator",init<>())
272     .def("isEmpty",&escript::AbstractSystemMatrix::isEmpty)
273     .def("solve",&escript::AbstractSystemMatrix::solve)
274     .def("of",&escript::AbstractSystemMatrix::vectorMultiply)
275     .def("saveMM",&escript::AbstractSystemMatrix::saveMM)
276 jgs 123 .def("saveHB",&escript::AbstractSystemMatrix::saveHB)
277 jgs 149 .def("resetValues",&escript::AbstractSystemMatrix::resetValues)
278 jgs 102 .def(self*other<escript::Data>());
279    
280     //
281     // Register esysExceptionTranslator
282     //
283     register_exception_translator<esysUtils::EsysException>(&esysUtils::esysExceptionTranslator);
284    
285     }

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