/[escript]/trunk/escript/src/escriptcpp.cpp
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Contents of /trunk/escript/src/escriptcpp.cpp

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Revision 1407 - (show annotations)
Mon Feb 4 06:45:48 2008 UTC (11 years, 8 months ago) by gross
File size: 12989 byte(s)
new upwinding algorithm (still fails)
1
2 /* $Id$ */
3
4 /*******************************************************
5 *
6 * Copyright 2003-2007 by ACceSS MNRF
7 * Copyright 2007 by University of Queensland
8 *
9 * http://esscc.uq.edu.au
10 * Primary Business: Queensland, Australia
11 * Licensed under the Open Software License version 3.0
12 * http://www.opensource.org/licenses/osl-3.0.php
13 *
14 *******************************************************/
15
16 #include "Data.h"
17 #include "FunctionSpace.h"
18 #include "FunctionSpaceFactory.h"
19 #include "DataFactory.h"
20 #include "AbstractContinuousDomain.h"
21 #include "AbstractDomain.h"
22 #include "Utils.h"
23 #include "AbstractSystemMatrix.h"
24 #include "AbstractTransportProblem.h"
25 #include "DataVector.h"
26
27 extern "C" {
28 #include "escript/blocktimer.h"
29 }
30
31 #include "esysUtils/esysExceptionTranslator.h"
32
33 #include <boost/python.hpp>
34 #include <boost/python/module.hpp>
35 #include <boost/python/def.hpp>
36 #include <boost/python/object.hpp>
37 #include <boost/python/tuple.hpp>
38 #include <boost/python/numeric.hpp>
39
40 using namespace boost::python;
41
42 /*! \mainpage Esys Documentation
43 *
44 * \version 1.0.0
45 *
46 * - \ref escript
47 *
48 * - \ref esys_exception "Esys Exception"
49 *
50 * - \ref finley
51 *
52 * - <a href=http://iservo.edu.au/esys/epydoc/index.html>Python module documentation (epydoc generated)</a>
53 *
54 */
55
56 /*! \page escript Escript
57 * Escript is the python module that contains the interfaces
58 * to the C++ side of escript.
59 *
60 * \version 1.0.0
61 *
62 * \section class_desc Class Description:
63 * Data
64 *
65 * \section class_limits Class Limitations:
66 * None
67 *
68 * \section class_conds Class Conditions of Use:
69 * None
70 *
71 * \section class_throws Throws:
72 * None
73 *
74 */
75
76 BOOST_PYTHON_MODULE(escriptcpp)
77 {
78 def("setNumberOfThreads",escript::setNumberOfThreads);
79 def("getNumberOfThreads",escript::getNumberOfThreads);
80 def("releaseUnusedMemory",escript::releaseUnusedMemory);
81 def("blocktimer_initialize",blocktimer_initialize);
82 def("blocktimer_reportSortByName",blocktimer_reportSortByName);
83 def("blocktimer_reportSortByTime",blocktimer_reportSortByTime);
84 def("blocktimer_increment",blocktimer_increment);
85 def("blocktimer_time",blocktimer_time);
86 def("getVersion",escript::getSvnVersion);
87
88
89 //
90 // Interface for AbstractDomain
91 //
92 class_<escript::AbstractDomain>("Domain",no_init)
93 .def("setTagMap",&escript::AbstractDomain::setTagMap)
94 .def("getTag",&escript::AbstractDomain::getTag)
95 .def("isValidTagName",&escript::AbstractDomain::isValidTagName)
96 .def("showTagNames",&escript::AbstractDomain::showTagNames)
97 .def("getX",&escript::AbstractDomain::getX)
98 .def("getNormal",&escript::AbstractDomain::getNormal)
99 .def("getSize",&escript::AbstractDomain::getSize)
100 .def("saveVTK",&escript::AbstractDomain::saveVTK)
101 .def("saveDX",&escript::AbstractDomain::saveDX)
102 .def("getMPISize",&escript::AbstractDomain::getMPISize)
103 .def("getMPIRank",&escript::AbstractDomain::getMPIRank)
104
105 .def(self == self)
106 .def(self != self);
107
108 //
109 // Interface for AbstractContinuousDomain
110 //
111 class_<escript::AbstractContinuousDomain, bases<escript::AbstractDomain> >("ContinuousDomain",no_init)
112 .def("getSystemMatrixTypeId",&escript::AbstractContinuousDomain::getSystemMatrixTypeId);
113
114 //
115 // Interface for FunctionSpace
116 //
117 class_<escript::FunctionSpace>("FunctionSpace",init<>())
118 .def("getDim",&escript::FunctionSpace::getDim)
119 .def("getDomain",&escript::FunctionSpace::getDomain,return_internal_reference<>())
120 .def("getX",&escript::FunctionSpace::getX)
121 .def("getNormal",&escript::FunctionSpace::getNormal)
122 .def("getSize",&escript::FunctionSpace::getSize)
123 .def("setTags",&escript::FunctionSpace::setTags)
124 .def("getTagFromDataPointNo",&escript::FunctionSpace::getTagFromDataPointNo)
125 .def("__str__",&escript::FunctionSpace::toString)
126 .def(self == self)
127 .def(self != self);
128 //
129 // Interface for Data
130 //
131 class_<escript::Data>("Data","TEST DOCUMENTATION",init<>())
132 // various constructors for Data objects
133 .def(init<const numeric::array&, optional<const escript::FunctionSpace&, bool> >(args("value","what","expand")))
134 .def(init<const object&, optional<const escript::FunctionSpace&, bool> >(args("value","what","expand")))
135 .def(init<const double, const tuple&, optional<const escript::FunctionSpace&, bool> >(args("value","shape","what","expand")))
136 .def(init<const escript::Data&, const escript::FunctionSpace&>(args("value","what")))
137 .def(init<const escript::Data&>())
138 // Note for Lutz, Need to specify the call policy in order to return a
139 // reference. In this case return_internal_reference.
140 .def("__str__",&escript::Data::toString)
141 .def("getDomain",&escript::Data::getDomain,return_internal_reference<>())
142 .def("getFunctionSpace",&escript::Data::getFunctionSpace,return_internal_reference<>())
143 .def("isEmpty",&escript::Data::isEmpty)
144 .def("isProtected",&escript::Data::isProtected)
145 .def("setProtection",&escript::Data::setProtection)
146 .def("getShape",&escript::Data::getShapeTuple)
147 .def("getRank",&escript::Data::getDataPointRank)
148 .def("dump",&escript::Data::dump)
149 .def("copyWithMask",&escript::Data::copyWithMask)
150 .def("setTaggedValue",&escript::Data::setTaggedValue)
151 .def("setTaggedValue",&escript::Data::setTaggedValueByName)
152 .def("getNumberOfDataPoints",&escript::Data::getNumDataPoints)
153 .def("isExpanded",&escript::Data::isExpanded)
154 .def("isTagged",&escript::Data::isTagged)
155 .def("expand",&escript::Data::expand)
156 .def("tag",&escript::Data::tag)
157 .def("copy",&escript::Data::copy)
158 .def("setValueOfDataPoint",&escript::Data::setValueOfDataPointToPyObject)
159 .def("setValueOfDataPoint",&escript::Data::setValueOfDataPointToArray)
160 .def("setValueOfDataPoint",&escript::Data::setValueOfDataPoint)
161 .def("getValueOfDataPoint",&escript::Data::getValueOfDataPoint)
162 .def("getValueOfGlobalDataPoint",&escript::Data::getValueOfGlobalDataPoint)
163 .def("setToZero",&escript::Data::setToZero)
164 .def("interpolate",&escript::Data::interpolate)
165 .def("minGlobalDataPoint",&escript::Data::minGlobalDataPoint)
166 .def("saveDX",&escript::Data::saveDX)
167 .def("saveVTK",&escript::Data::saveVTK)
168 .def("getTagNumber",&escript::Data::getTagNumber)
169 .def("archiveData",&escript::Data::archiveData)
170 .def("extractData",&escript::Data::extractData)
171 // Unary functions for Data
172 .def("_interpolate",&escript::Data::interpolate)
173 .def("_grad",&escript::Data::gradOn)
174 .def("_grad",&escript::Data::grad)
175 .def("_transpose",&escript::Data::transpose)
176 .def("_trace",&escript::Data::trace)
177 .def("_maxval",&escript::Data::maxval)
178 .def("_minval",&escript::Data::minval)
179 .def("_wherePositive",&escript::Data::wherePositive)
180 .def("_whereNegative",&escript::Data::whereNegative)
181 .def("_whereNonNegative",&escript::Data::whereNonNegative)
182 .def("_whereNonPositive",&escript::Data::whereNonPositive)
183 .def("_whereZero",&escript::Data::whereZero,(arg("tol")=0.0))
184 .def("_whereNonZero",&escript::Data::whereNonZero,(arg("tol")=0.0))
185 .def("_erf",&escript::Data::erf)
186 .def("_sin",&escript::Data::sin)
187 .def("_cos",&escript::Data::cos)
188 .def("_tan",&escript::Data::tan)
189 .def("_asin",&escript::Data::asin)
190 .def("_acos",&escript::Data::acos)
191 .def("_atan",&escript::Data::atan)
192 .def("_sinh",&escript::Data::sinh)
193 .def("_cosh",&escript::Data::cosh)
194 .def("_tanh",&escript::Data::tanh)
195 .def("_asinh",&escript::Data::asinh)
196 .def("_acosh",&escript::Data::acosh)
197 .def("_atanh",&escript::Data::atanh)
198 .def("_exp",&escript::Data::exp)
199 .def("_sqrt",&escript::Data::sqrt)
200 .def("_log10",&escript::Data::log10)
201 .def("_log",&escript::Data::log)
202 .def("_sign",&escript::Data::sign)
203 .def("_symmetric",&escript::Data::symmetric)
204 .def("_nonsymmetric",&escript::Data::nonsymmetric)
205 .def("_trace",&escript::Data::trace)
206 .def("_swap_axes",&escript::Data::swapaxes)
207 .def("_eigenvalues",&escript::Data::eigenvalues)
208 .def("_eigenvalues_and_eigenvectors",&escript::Data::eigenvalues_and_eigenvectors,(arg("tol")=1.e-13))
209 // functions returning a single real number:
210 .def("_Lsup",&escript::Data::Lsup)
211 .def("_sup",&escript::Data::sup)
212 .def("_inf",&escript::Data::inf)
213 .def("_integrate",&escript::Data::integrate)
214
215 // following implements the python abs operator
216 .def("__abs__",&escript::Data::abs)
217 // following implements the python "-" negation operator
218 .def("__neg__",&escript::Data::neg)
219 // following implements the python "+" identity operator
220 .def("__pos__",&escript::Data::pos)
221 // following two functions implement the python [] operator
222 .def("__getitem__",&escript::Data::getItem)
223 .def("__setitem__",&escript::Data::setItemO)
224 .def("__setitem__",&escript::Data::setItemD)
225 // following two functions implement the python ** operator
226 .def("__pow__",&escript::Data::powO)
227 .def("__pow__",&escript::Data::powD)
228 .def("__rpow__",&escript::Data::rpowO)
229 // NOTE:: The order of these declarations is important. Anything
230 // declared before the generic declaration isn't found so the generic
231 // version will be called.
232 .def(self + other<object>())
233 .def(other<object>() + self)
234 .def(self + self)
235 .def(self += other<object>())
236 .def(self += self)
237
238 .def(self - other<object>())
239 .def(other<object>() - self)
240 .def(self - self)
241 .def(self -= other<object>())
242 .def(self -= self)
243
244 .def(self * other<object>())
245 .def(other<object>() * self)
246 .def(self * self)
247 .def(self *= other<object>())
248 .def(self *= self)
249
250 .def(self / other<object>())
251 .def(other<object>() / self)
252 .def(self / self)
253 .def(self /= other<object>())
254 .def(self /= self)
255 // Need scope resolution due to a bug either in the compiler or
256 // the boost code. This calls operator << for Data.
257 .def(self_ns::str(self));
258
259 //
260 // Factory methods for function space
261 //
262 def("ContinuousFunction",escript::continuousFunction);
263 def("ReducedContinuousFunction",escript::reducedContinuousFunction);
264 def("Function",escript::function);
265 def("ReducedFunction",escript::reducedFunction);
266 def("FunctionOnBoundary",escript::functionOnBoundary);
267 def("ReducedFunctionOnBoundary",escript::reducedFunctionOnBoundary);
268 def("FunctionOnContactZero",escript::functionOnContactZero);
269 def("ReducedFunctionOnContactZero",escript::reducedFunctionOnContactZero);
270 def("FunctionOnContactOne",escript::functionOnContactOne);
271 def("ReducedFunctionOnContactOne",escript::reducedFunctionOnContactOne);
272 def("Solution",escript::solution);
273 def("ReducedSolution",escript::reducedSolution);
274 def("DiracDeltaFunction",escript::diracDeltaFunction);
275
276 //
277 // Factory methods for Data
278 //
279 def("load",escript::load);
280 def("loadIsConfigured",escript::loadConfigured);
281 def("Scalar",escript::Scalar,
282 (arg("value")=0.0,
283 arg("what")=escript::FunctionSpace(),
284 arg("expanded")=false));
285 def("Vector",escript::Vector,
286 (arg("value")=0.0,
287 arg("what")=escript::FunctionSpace(),
288 arg("expanded")=false));
289 def("Tensor",escript::Tensor,
290 (arg("value")=0.0,
291 arg("what")=escript::FunctionSpace(),
292 arg("expanded")=false));
293 def("Tensor3",escript::Tensor3,
294 (arg("value")=0.0,
295 arg("what")=escript::FunctionSpace(),
296 arg("expanded")=false));
297 def("Tensor4",escript::Tensor4,
298 (arg("value")=0.0,
299 arg("what")=escript::FunctionSpace(),
300 arg("expanded")=false));
301
302 //
303 // Binary operators
304 //
305 def("C_GeneralTensorProduct",escript::C_GeneralTensorProduct,
306 (arg("arg0")=escript::Data(),
307 arg("arg1")=escript::Data(),
308 arg("axis_offset")=0,
309 arg("transpose")=0));
310
311 //
312 // Interface for AbstractSystemMatrix
313 //
314 class_<escript::AbstractSystemMatrix>("Operator",init<>())
315 .def("isEmpty",&escript::AbstractSystemMatrix::isEmpty)
316 .def("solve",&escript::AbstractSystemMatrix::solve)
317 .def("of",&escript::AbstractSystemMatrix::vectorMultiply)
318 .def("saveMM",&escript::AbstractSystemMatrix::saveMM)
319 .def("saveHB",&escript::AbstractSystemMatrix::saveHB)
320 .def("resetValues",&escript::AbstractSystemMatrix::resetValues)
321 .def(self*other<escript::Data>());
322 //
323 // Interface for AbstractTransportProblem
324 //
325 class_<escript::AbstractTransportProblem>("TransportProblem",init<>())
326 .def("isEmpty",&escript::AbstractTransportProblem::isEmpty)
327 .def("solve",&escript::AbstractTransportProblem::solve)
328 .def("setInitialValue",&escript::AbstractTransportProblem::setInitialValue)
329 .def("resetTransport",&escript::AbstractTransportProblem::resetTransport)
330 .def("getSafeTimeStepSize",&escript::AbstractTransportProblem::getSafeTimeStepSize);
331
332 //
333 // Register esysExceptionTranslator
334 //
335 register_exception_translator<esysUtils::EsysException>(&esysUtils::esysExceptionTranslator);
336
337 }

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