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Merging version 2269 to trunk
Bringing all changes across from schroedinger. (Note this does not mean development is done, just that it will happen on the trunk for now). If anyone notices any problems please contact me.
Copyright updated in all files
Merged noarrayview branch onto trunk.
And get the *(&(*&(* name right
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.
Make a temp copy of the trunk before checking in the windows changes
The MPI branch is hereby closed. All future work should be in trunk. Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch. In this revision I copied all files from trunk-mpi-branch over the corresponding trunk files. I did not use 'svn merge', it was a copy.
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI). Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will profit form this at this stage but it will allow a faster dump of data objects.
escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/. Currently only constant data are implemented with expanded and tagged data to follow. There are two new functions to dump a data object s=Data(...) s.dump(<filename>) and to recover it s=load(<filename>, domain) Notice that the function space of s is recovered but domain is still need. dump and load will replace archive and extract. The installation needs now the netCDF installed.
Some modifications to the binary operations +,-,*/, pow. The code is a bit simpler now and more efficient has there is no reseising required now. the resizing method has been removed as it is very, very inefficient. Even serial code should be faster now. It is now forbidden to do an inplace update of scalar data object with an object of rank >0 as this is very slow (and does not make much sense).
+ NEW BUILD SYSTEM
This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.
ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows
module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3
+ Changed include paths to no longer require the cpp suffix (missed in earlier commit) + modified tests so they no longer install to #/lib
+Unit tests unified into escript_UnitTest +SConscript support for build_tests and run_tests
Clean up test into single test suite and only one SConscript file so it is easier to maintain. Note: + Use the command line options on tests in order to run only one of them if you need to + THIS DOESN'T WORK YET: I've not merged the tests, that will follow shortly + I do hope this merges with the changes on the trunk!
Creating a private branch so I can test and verify cross-platform build
restructure escript source tree move src/Data/* -> src remove inc modify #includes and cpppath settings accordingly
reorganised esysUtils to remove inc directory
move all directories from trunk/esys2 into trunk and remove esys2
DataConstantTestCase.cpp, DataExpandedTestCase.cpp: Replace DataExpanded testData1(FunctionSpace(),....) with FunctionSpace tmp_fns; DataExpanded testData1(tmp_fns,shape,data); for GCC's sake. Added some profiling to PoissonSolverTest.py.
Merge of development branch dev-02 back to main trunk on 2005-09-01
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