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#!/usr/bin/python |
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|
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# $Id$ |
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__copyright__=""" Copyright (c) 2006 by ACcESS MNRF |
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http://www.access.edu.au |
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Primary Business: Queensland, Australia""" |
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__license__="""Licensed under the Open Software License version 3.0 |
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http://www.opensource.org/licenses/osl-3.0.php""" |
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|
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import unittest |
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from esys.escript.modelframe import Model,Link,Simulation,ParameterSet,ESySXMLParser,DataSource |
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import math |
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from cStringIO import StringIO |
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from xml.dom import minidom |
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import numarray |
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|
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class XMLDocumentTestCase(unittest.TestCase): |
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|
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def setUp(self): |
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|
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o1=ODETEST(debug=False) |
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o1.u=10 |
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o2=ODETEST(debug=False) |
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o2.u=-10. |
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o1.f=Link(o2,"u") |
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o2.f=Link(o1,"u") |
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m=Messenger() |
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o1.dt=0.01 |
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m.message=Link(o1) |
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s=Simulation([o1,o2,m],debug=False) |
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s.run() |
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output = StringIO() |
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s.writeXML(output) |
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output.reset() |
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outputList = output.readlines() |
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self.xmlList = outputList |
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|
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def testFirstLine(self): |
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firstLine = self.xmlList[0] |
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self.assertEqual('<?xml version="1.0" ?>\n', firstLine) |
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|
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def testEsysHeader(self): |
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header = self.xmlList[1] |
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self.assertEqual('<ESys>\n', header) |
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|
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def testEsysFooter(self): |
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footer = self.xmlList[-1] |
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self.assertEqual('</ESys>\n', footer) |
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|
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def testSimulationHeader(self): |
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pass |
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|
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def testSimulationFooter(self): |
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pass |
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|
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class SimulationTestCase(unittest.TestCase): |
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def setUp(self): |
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o1=ODETEST(debug=False) |
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o1.u=10 |
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o2=ODETEST(debug=False) |
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o2.u=-10. |
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o1.f=Link(o2,"u") |
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o2.f=Link(o1,"u") |
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m=Messenger() |
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o1.dt=0.01 |
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m.message=Link(o1) |
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self.s=Simulation([o1,o2,m],debug=False) |
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self.s.run() |
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output = StringIO() |
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self.s.writeXML(output) |
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output.reset() |
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self.xml = output.read() |
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|
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def testSimulation(self): |
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assert "<Simulation" in self.xml, "I should see a Simulation" |
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|
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def testParseAndInstanceOfSimulation(self): |
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|
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xml = ESySXMLParser(self.xml) |
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newSim = xml.parse()[0] |
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assert (isinstance (newSim, Simulation)) |
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newout = StringIO() |
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newSim.writeXML(newout) |
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newout.reset() |
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xml = newout.read() |
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assert '<Simulation' in xml, "Missing a Simulation! It should be in this!" |
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|
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|
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|
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|
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class LinkTestCase(unittest.TestCase): |
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|
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|
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def setUp(self): |
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|
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self.o1=ODETEST(debug=False) |
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#self.o1.u=10 |
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self.o2=ODETEST(debug=False) |
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self.o2.u=-10. |
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self.o1.f=Link(self.o2,"u") |
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self.o2.f=Link(self.o1,"u") |
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self.o2.declareParameter(child=self.o1) |
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|
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def testLinkCreation(self): |
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self.o1.f=Link(self.o2,"u") |
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assert self.o1.f |
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|
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|
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def testLinkValue(self): |
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self.assertEqual(self.o1.f, -10) |
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|
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def testLinkTarget(self): |
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pass |
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|
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def testLinkDefaultAttribute(self): |
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Link(self.o2) |
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|
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def testLinkXML(self): |
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s = StringIO() |
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self.o2.writeXML(s) |
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s.reset() |
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xmlout = s.read() |
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assert '<Link' in xmlout |
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|
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def testLinkTargetXML(self): |
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pass |
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|
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class ParamaterSetTestCase(unittest.TestCase): |
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|
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|
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def setUp(self): |
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self.p = ParameterSet() |
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self.p.declareParameter(gamma1=1.,gamma2=2.,gamma3=3.) |
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|
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def testParameterSetCreation(self): |
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self.assertEqual(self.p.gamma1, 1.) |
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|
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def testParameterSetXMLCreation(self): |
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s = StringIO() |
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self.p.writeXML(s) |
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s.reset() |
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xmlout = s.read() |
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assert ("gamma1" in xmlout) |
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assert ("gamma2" in xmlout) |
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assert ("gamma3" in xmlout) |
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esysxml=ESySXMLParser(xmlout) |
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parsable = esysxml.parse()[0] |
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assert (isinstance (parsable, ParameterSet)) |
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assert (self._dom(self.p).getElementsByTagName("ParameterSet")) |
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|
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def testParameterSetFromXML(self): |
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s = StringIO() |
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self.p.writeXML(s) |
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s.reset() |
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xmlout = s.read() |
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esysxml=ESySXMLParser(xmlout) |
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doc = self._class(self.p) |
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pset = ParameterSet.fromDom(esysxml, self._dom(self.p).getElementsByTagName("ParameterSet")[0]) |
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assert (isinstance(pset, ParameterSet)) |
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assert (isinstance(doc, ParameterSet)) |
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self.assertEqual(self.p.gamma1,doc.gamma1) |
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|
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|
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def testParameterSetWithChildrenFromXML(self): |
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p2 = ParameterSet() |
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p2.declareParameter(s="abc", f=3.) |
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self.p.declareParameter(child=p2) |
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doc = self._class(self.p) |
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#pset = ParameterSet.fromDom(doc.getElementsByTagName("ParameterSet")[0]) |
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self.assertEqual(self.p.child.f, doc.child.f) |
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|
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def testParameterSetChild(self): |
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p2 = ParameterSet() |
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p2.declareParameter(s="abc", f=3.) |
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self.p.declareParameter(child=p2) |
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self.assertEqual(self.p.child.s, "abc") |
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self.assertEqual(self.p.child.f, 3.) |
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|
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def _dom(self, input): |
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s = StringIO() |
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input.writeXML(s) |
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s.reset() |
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xmlout = s.read() |
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doc = minidom.parseString(xmlout) |
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return doc |
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|
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def _class(self, input): |
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s = StringIO() |
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input.writeXML(s) |
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s.reset() |
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xmlout = s.read() |
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esysxml=ESySXMLParser(xmlout) |
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doc =esysxml.parse()[0] |
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return doc |
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|
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def testFromDomInt(self): |
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p3 = ParameterSet() |
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p3.declareParameter(inttest=1) |
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doc = self._class(p3) |
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assert type(doc.inttest)==int |
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|
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def testFromDomNumarrayVector(self): |
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p3 = ParameterSet() |
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mynumarray = numarray.array([3., 4., 5.], type=numarray.Float64) |
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p3.declareParameter(numtest=mynumarray) |
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doc = self._class(p3) |
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assert doc.numtest.type() == numarray.Float64 |
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assert type(doc.numtest) == numarray.NumArray |
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|
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def testFromDomNumarrayMulti(self): |
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p3 = ParameterSet() |
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mynumarray = numarray.array([[1., 2., 3.], [3., 4., 5.]], type=numarray.Float64) |
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p3.declareParameter(numtest=mynumarray) |
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doc = self._class(p3) |
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assert doc.numtest.type() == numarray.Float64 |
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assert type(doc.numtest) == numarray.NumArray |
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|
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def testBoolLists(self): |
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p4 = ParameterSet() |
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mylist = [True, False, False, True] |
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p4.declareParameter(listest=mylist) |
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doc = self._class(p4) |
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assert type(doc.listest) == numarray.NumArray |
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assert doc.listest.type() == numarray.Bool |
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assert len(doc.listest) == len(mylist) |
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assert min([ mylist[i] == doc.listest[i] for i in range(len( doc.listest)) ]) |
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|
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def testIntLists(self): |
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p4 = ParameterSet() |
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mylist = [1,2,4] |
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p4.declareParameter(listest=mylist) |
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doc = self._class(p4) |
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assert type(doc.listest) == numarray.NumArray |
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assert doc.listest.type() == numarray.Int |
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assert len(doc.listest) == len(mylist) |
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assert min([ mylist[i] == doc.listest[i] for i in range(len( doc.listest)) ]) |
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|
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def testFloatLists(self): |
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p4 = ParameterSet() |
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mylist = [1.,2.,4.] |
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p4.declareParameter(listest=mylist) |
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doc = self._class(p4) |
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assert type(doc.listest) == numarray.NumArray |
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assert doc.listest.type() == numarray.Float |
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assert len(doc.listest) == len(mylist) |
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assert min([ mylist[i] == doc.listest[i] for i in range(len( doc.listest)) ]) |
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|
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def testStringLists(self): |
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p4 = ParameterSet() |
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mylist = ["a", "b", "c"] |
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p4.declareParameter(listest=mylist) |
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doc = self._class(p4) |
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assert type(doc.listest) == list |
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assert len(doc.listest) == len(mylist) |
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assert min([ mylist[i] == doc.listest[i] for i in range(len( doc.listest)) ]) |
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|
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def testDatasource(self): |
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p5 = ParameterSet() |
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myURI = DataSource("somelocalfile.txt", "text") |
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p5.declareParameter(uritest=myURI) |
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doc = self._class(p5) |
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self.assertEquals(myURI.uri, doc.uritest.uri) |
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self.assertEquals(myURI.fileformat, doc.uritest.fileformat) |
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assert type(doc.uritest) == DataSource |
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|
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|
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|
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class ModeltoDomTestCase(unittest.TestCase): |
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|
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def _class(self): |
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# returns a modelframe class, generated from the xml |
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s = StringIO() |
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self.o1.writeXML(s) |
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s.reset() |
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self.xmlout = s.read() |
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esysxml=ESySXMLParser(xmlout) |
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doc =esysxml.parse()[0] |
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return doc |
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|
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def _dom(self): |
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# returns a minidom dom element, generated from the xml |
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s = StringIO() |
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self.o1.writeXML(s) |
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s.reset() |
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self.xmlout = s.read() |
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doc = minidom.parseString(self.xmlout) |
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return doc |
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|
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def setUp(self): |
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self.o1=ODETEST(debug=False) |
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self.o1.message='blah' |
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|
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def testModelExists(self): |
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modeldoc = self._class() |
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assert (isinstance, (modeldoc, Model)) |
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assert self._dom().getElementsByTagName("Model") |
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|
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def testModelhasID(self): |
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assert int(self._dom().getElementsByTagName("Model")[0].getAttribute("id"))>99 |
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|
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class ModeltoDomTestCase(unittest.TestCase): |
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def _xml(self, modulename, modelname): |
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# returns a modelframe class, generated from the xml |
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return '''<?xml version="1.0" ?> |
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<ESys> <Simulation type="Simulation"> <Component rank="0"> |
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|
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<Model id="127" module="%s" type="%s"> |
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|
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<Parameter type="float"> <Name> a </Name> <Value> 0.9 </Value> </Parameter> |
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<Parameter type="Link"> <Name> f </Name> <Value> <Link> <Target> 128 </Target> |
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<Attribute> u </Attribute> </Link> </Value> </Parameter> <Parameter |
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type="float"> <Name> tend </Name> <Value> |
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1.0 </Value> </Parameter> <Parameter type="int"> <Name> u </Name> <Value> 10 |
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</Value> </Parameter> <Parameter type="float"> <Name> tol </Name> <Value> |
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1e-08 </Value> </Parameter> <Parameter type="float"> <Name> dt </Name> |
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<Value> |
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0.01 </Value> </Parameter> <Parameter type="str"> <Name> message </Name> |
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<Value> current error = 9.516258e-01 </Value> </Parameter> </Model> |
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</Component> <Component rank="1"> <Model id="128" type="ODETEST"> <Parameter |
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type="float"> <Name> a </Name> <Value> |
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0.9 </Value> </Parameter> <Parameter type="Link"> <Name> f </Name> <Value> |
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<Link> <Target> 127 </Target> <Attribute> u </Attribute> </Link> </Value> |
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</Parameter> <Parameter type="float"> <Name> tend </Name> <Value> |
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1.0 </Value> </Parameter> <Parameter type="float"> <Name> u </Name> <Value> |
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-10.0 </Value> </Parameter> <Parameter type="float"> <Name> tol </Name> |
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<Value> 1e-08 </Value> </Parameter> <Parameter type="float"> <Name> dt |
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</Name> <Value> |
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0.1 </Value> </Parameter> <Parameter type="str"> <Name> message </Name> <Value> |
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current error = 1.904837e+01 </Value> </Parameter> </Model> </Component> |
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<Component rank="2"> <Model id="129" type="Messenger"> <Parameter |
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type="Link"> <Name> message </Name> <Value> <Link> <Target> 127 </Target> |
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<Attribute> message </Attribute> </Link> </Value> </Parameter> </Model> |
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</Component> </Simulation> <Model id="150" type="ODETEST"> <Parameter |
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type="float"> <Name> a </Name> <Value> |
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0.9 </Value> </Parameter> <Parameter type="Link"> <Name> f </Name> <Value> |
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<Link> <Target> 127 </Target> <Attribute> u </Attribute> </Link> </Value> |
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</Parameter> <Parameter type="float"> <Name> tend </Name> <Value> |
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1.0 </Value> </Parameter> <Parameter type="float"> <Name> u </Name> <Value> |
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-10.0 </Value> </Parameter> <Parameter type="float"> <Name> tol </Name> |
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<Value> 1e-08 </Value> </Parameter> <Parameter type="float"> <Name> dt |
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</Name> <Value> |
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0.1 </Value> </Parameter> <Parameter type="str"> <Name> message </Name> <Value> |
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current error = 1.904837e+01 </Value> </Parameter> </Model> <Model id="130" |
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type="ODETEST"> <Parameter type="float"> <Name> a </Name> <Value> |
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0.9 </Value> </Parameter> <Parameter type="Link"> <Name> f </Name> <Value> |
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<Link> <Target> 128 </Target> <Attribute> u </Attribute> </Link> </Value> |
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</Parameter> <Parameter type="float"> <Name> tend </Name> <Value> |
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1.0 </Value> </Parameter> <Parameter type="int"> <Name> u </Name> <Value> 10 |
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</Value> </Parameter> <Parameter type="float"> <Name> tol </Name> <Value> |
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1e-08 </Value> </Parameter> <Parameter type="float"> <Name> dt </Name> |
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<Value> |
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0.01 </Value> </Parameter> <Parameter type="str"> <Name> message </Name> |
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<Value> current error = 9.516258e-01 </Value> </Parameter> </Model> <Model |
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id="170" type="ODETEST"> <Parameter type="float"> <Name> a </Name> <Value> |
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0.9 </Value> </Parameter> <Parameter type="Link"> <Name> f </Name> <Value> |
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<Link> <Target> 128 </Target> <Attribute> u </Attribute> </Link> </Value> |
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</Parameter> <Parameter type="float"> <Name> tend </Name> <Value> |
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1.0 </Value> </Parameter> <Parameter type="int"> <Name> u </Name> <Value> 10 |
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</Value> </Parameter> <Parameter type="float"> <Name> tol </Name> <Value> |
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1e-08 </Value> </Parameter> <Parameter type="float"> <Name> dt </Name> |
| 361 |
<Value> |
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0.01 </Value> </Parameter> <Parameter type="str"> <Name> message </Name> |
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<Value> current error = 9.516258e-01 </Value> </Parameter> </Model> </ESys> |
| 364 |
''' % (modulename, modelname) |
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|
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def testModuleAttribute(self): |
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esysxml=ESySXMLParser(self._xml('run_xml', 'ODETEST')) |
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modeldoc=esysxml.parse()[0] |
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|
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def testModuleAttributeFails(self): |
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try: |
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esysxml=ESySXMLParser(self._xml('a', 'b')) |
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modeldoc=esysxml.parse()[0] |
| 374 |
except ImportError: |
| 375 |
return # correct |
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|
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assert False, "This test should have resulted in an ImportError" |
| 378 |
|
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class Messenger(Model): |
| 380 |
def __init__(self, *args, **kwargs): |
| 381 |
Model.__init__(self, *args, **kwargs) |
| 382 |
self.declareParameter(message="none") |
| 383 |
|
| 384 |
def doInitialization(self): |
| 385 |
self.__t=0 |
| 386 |
#print "I start talking now!" |
| 387 |
|
| 388 |
def doStepPostprocessing(self,dt): |
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self.__t+=dt |
| 390 |
#print "Message (time %e) : %s "%(self.__t,self.message) |
| 391 |
|
| 392 |
def doFinalization(self): |
| 393 |
#print "I have no more to say!" |
| 394 |
pass |
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|
| 396 |
|
| 397 |
|
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class ODETEST(Model): |
| 399 |
""" implements a solver for the ODE |
| 400 |
|
| 401 |
du/dt=a*u+f(t) |
| 402 |
|
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we use a implicit euler scheme : |
| 404 |
|
| 405 |
u_n-u_{n-1}= dt*a u_n + st*f(t_n) |
| 406 |
|
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to get u_n we run an iterative process |
| 408 |
|
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u_{n.k}=u_{n-1}+dt*(a u_{n.i-1} + f(t_n)) |
| 410 |
|
| 411 |
|
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input for this model are step size dt, end time tend and a value for |
| 413 |
a, f and initial value for u. we need also a tolerance tol for a |
| 414 |
stopping criterion. |
| 415 |
|
| 416 |
""" |
| 417 |
|
| 418 |
def __init__(self, *args, **kwargs): |
| 419 |
Model.__init__(self, *args, **kwargs) |
| 420 |
self.declareParameter(tend=1.,dt=0.1,a=0.9,u=10.,f=0.,message="",tol=1.e-8) |
| 421 |
|
| 422 |
def doInitialization(self): |
| 423 |
self.__tn=0 |
| 424 |
self.__iter=0 |
| 425 |
|
| 426 |
def doStepPreprocessing(self,dt): |
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self.__iter=0 |
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self.__u_last=self.u |
| 429 |
|
| 430 |
def doStep(self,dt): |
| 431 |
self.__iter+=1 |
| 432 |
self.__u_old=self.u |
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self.u=self.__u_last+dt*(self.a*self.__u_old+self.f) |
| 434 |
|
| 435 |
def terminate(self): |
| 436 |
if self.__iter<1: |
| 437 |
return False |
| 438 |
else: |
| 439 |
return abs(self.__u_old-self.u)<self.tol*abs(self.u) |
| 440 |
|
| 441 |
def doStepPostprocessing(self,dt): |
| 442 |
self.__tn+=dt |
| 443 |
self.message="current error = %e"%abs(self.u-10.*math.exp((self.a-1.)*self.__tn)) |
| 444 |
|
| 445 |
def getSafeTimeStepSize(self,dt): |
| 446 |
return min(self.dt,1./(abs(self.a)+1.)) |
| 447 |
|
| 448 |
def finalize(self): |
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return self.__tn>=self.tend |
| 450 |
|
| 451 |
|
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|
| 453 |
if __name__ == "__main__": |
| 454 |
unittest.main() |
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