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Revision 6367 - Directory Listing
Modified Tue Jul 19 04:56:16 2016 UTC (17 months ago) by caltinay
SolverBuddy: overload updateDiagnostics so we can call it from C++ - not ideal
but quick fix before a revamp of the whole class.
TrilinosMatrix: update solver diagnostics for time, residual and num iter.
RipleyMatrix: don't copy the SolverBuddy so the diags are actually returned.


Revision 6364 - Directory Listing
Modified Mon Jul 18 02:25:04 2016 UTC (17 months ago) by jfenwick
Force shorter trees to get lazy testing done in reasonable time


Revision 6362 - Directory Listing
Modified Thu Jul 7 03:12:06 2016 UTC (17 months, 1 week ago) by jfenwick
Doesn't fix any major problem bit closes #370

It wasn't actually a problem, but I've added explanatory text
to make it clear that something isn't going wrong.


Revision 6353 - Directory Listing
Modified Tue Jul 5 06:36:20 2016 UTC (17 months, 2 weeks ago) by jfenwick
Another attempt to fix #372


Revision 6352 - Directory Listing
Modified Tue Jul 5 05:53:49 2016 UTC (17 months, 2 weeks ago) by jfenwick
Fixing summary for complex data


Revision 6348 - Directory Listing
Modified Tue Jul 5 05:31:48 2016 UTC (17 months, 2 weeks ago) by caltinay
interrogate coefficient for value type rather than PDE.

That way we get the correct type for
pde.createCoefficient("q")
even with complex-valued PDEs.


Revision 6345 - Directory Listing
Modified Mon Jul 4 05:32:05 2016 UTC (17 months, 2 weeks ago) by jfenwick
Converting minGlobalDataPoint and maxGlobalDataPoint to internal_
That way people should not be using it and we can get rid of #5

Fixed a minor error in an error message.


Revision 6344 - Directory Listing
Modified Mon Jul 4 03:19:25 2016 UTC (17 months, 2 weeks ago) by jfenwick
Fix #372
Add some minimal testing
Change some references to "view"


Revision 6340 - Directory Listing
Modified Fri Jul 1 12:58:45 2016 UTC (17 months, 2 weeks ago) by caltinay
Final piece of the puzzle: enable nullifyRowsAndCols for complex matrices.

There needs to be a new method to set diagonals to a complex value but I
haven't done that yet.

!! We can now solve a complex-valued 2D PDE with ripley !!


Revision 6337 - Directory Listing
Modified Fri Jul 1 12:38:18 2016 UTC (17 months, 2 weeks ago) by caltinay
(4) add complex argument to LinearProblem, LinearPDE and PDECoef.


Revision 6336 - Directory Listing
Modified Fri Jul 1 12:37:05 2016 UTC (17 months, 2 weeks ago) by caltinay
(3) add isComplex & setComplex to solver options.


Revision 6335 - Directory Listing
Modified Fri Jul 1 12:36:22 2016 UTC (17 months, 2 weeks ago) by caltinay
(2) use the right type to initialize Data object for mat-vec mult.


Revision 6334 - Directory Listing
Modified Fri Jul 1 12:35:42 2016 UTC (17 months, 2 weeks ago) by caltinay
The next few commits will start introducing complex-valued PDEs to escript.

Firstly, here is a C++ Data constructor that takes a complex constant. This
will be required by the mat-vec mult implementation.


Revision 6330 - Directory Listing
Modified Sat Jun 25 11:36:26 2016 UTC (17 months, 3 weeks ago) by caltinay
added missing x.


Revision 6329 - Directory Listing
Modified Fri Jun 24 04:19:10 2016 UTC (17 months, 3 weeks ago) by caltinay
*sigh* add another barrier for file writer test - still not convinced openMPI
behaves properly.


Revision 6328 - Directory Listing
Modified Fri Jun 24 00:36:00 2016 UTC (17 months, 3 weeks ago) by caltinay
try again - store exception in another var to avoid it becoming out of context.


Revision 6322 - Directory Listing
Modified Thu Jun 23 05:56:49 2016 UTC (17 months, 3 weeks ago) by caltinay
don't reference e before assignment.


Revision 6321 - Directory Listing
Modified Thu Jun 23 05:38:50 2016 UTC (17 months, 3 weeks ago) by caltinay
feature #3: this should fix up remaining tests that only checked paso_direct.
I also moved paso_direct to 'hasFeature' as it's a boolean...


Revision 6319 - Directory Listing
Modified Thu Jun 23 05:01:39 2016 UTC (17 months, 3 weeks ago) by caltinay
remove Super LU from everywhere, we never supported it and never will directly.


Revision 6318 - Directory Listing
Modified Thu Jun 23 04:58:46 2016 UTC (17 months, 3 weeks ago) by caltinay
remove pastix from everywhere. We never supported it and never will directly.


Revision 6315 - Directory Listing
Modified Wed Jun 22 03:59:33 2016 UTC (17 months, 3 weeks ago) by caltinay
lookin' good so unskip more tests.


Revision 6311 - Directory Listing
Modified Tue Jun 21 06:41:55 2016 UTC (17 months, 4 weeks ago) by caltinay
lots of noise due to reformatting but mainly added braces around parallel
loops within switch so nvcc doesn't choke.


Revision 6308 - Directory Listing
Modified Mon Jun 20 01:59:34 2016 UTC (17 months, 4 weeks ago) by caltinay
trying to fix remaining trilinos errors.


Revision 6307 - Directory Listing
Modified Sun Jun 19 11:05:47 2016 UTC (17 months, 4 weeks ago) by caltinay
fixing order of expressions in nlpde so Lsup works in MPI.
Also only do the lsup's if required (debug output).


Revision 6306 - Directory Listing
Modified Sat Jun 18 13:26:00 2016 UTC (18 months ago) by caltinay
fix test

Revision 6305 - Directory Listing
Modified Sat Jun 18 11:11:30 2016 UTC (18 months ago) by caltinay
suppress sympy warning with py3


Revision 6303 - Directory Listing
Modified Sat Jun 18 10:53:18 2016 UTC (18 months ago) by caltinay
changed default value for ILUT drop tolerance and fixed a typo.


Revision 6301 - Directory Listing
Modified Fri Jun 17 07:45:23 2016 UTC (18 months ago) by caltinay
yes

Revision 6300 - Directory Listing
Modified Fri Jun 17 07:03:44 2016 UTC (18 months ago) by caltinay
another attempt to fix the logic.


Revision 6299 - Directory Listing
Modified Fri Jun 17 05:53:58 2016 UTC (18 months ago) by caltinay
fix paso direct solver detection logic in tests.


Revision 6296 - Directory Listing
Modified Thu Jun 16 23:58:54 2016 UTC (18 months ago) by caltinay
don't claim to have paso direct solvers without paso.
Fix tests accordingly as well.


Revision 6293 - Directory Listing
Modified Thu Jun 16 08:34:17 2016 UTC (18 months ago) by caltinay
more test fixes.


Revision 6291 - Directory Listing
Modified Thu Jun 16 05:47:55 2016 UTC (18 months ago) by caltinay
advertise if escript was built with long indices as this means we can't run
MueLu (AMG) tests. Increased number of GS sweeps for a test that hangs again.


Revision 6280 - Directory Listing
Modified Tue Jun 14 02:39:13 2016 UTC (18 months ago) by caltinay
BIG FAT MAJOR OOPS!
It looks like some of our tests have never actually run because something
goes wrong when a test class inherits from multiple test classes in escript.
Dudley never supported contact elements, yet only some of the tests were marked
as skipped. Symfuncs refers to self.RES_TOL which was never defined.

This commit adds some relevant skip's and the next ones will actually enable
the tests in the domains.


Revision 6277 - Directory Listing
Modified Mon Jun 13 06:18:44 2016 UTC (18 months ago) by caltinay
implemented trilinos-based interpolation from red. DOF -> reducedNodes in finley.
Replaced some assertTrue's by more specific tests for more useful output.


Revision 6271 - Directory Listing
Modified Thu Jun 9 04:30:10 2016 UTC (18 months, 1 week ago) by caltinay
work around the fact that closing a MPI shared file does not always
have barrier semantics.


Revision 6267 - Directory Listing
Modified Wed Jun 8 01:57:48 2016 UTC (18 months, 1 week ago) by caltinay
Fixing test that appears to depend on filesystem type/MPI implementation.

Revision 6264 - Directory Listing
Modified Fri Jun 3 06:23:10 2016 UTC (18 months, 2 weeks ago) by caltinay
fixing last dudley failures with trilinos. MueLu is not compatible with
block matrices yet so skip those tests. On the other hand we can now run
AMG tests with >1 rank.


Revision 6262 - Directory Listing
Modified Fri Jun 3 05:14:55 2016 UTC (18 months, 2 weeks ago) by caltinay
fix some tests with trilinos.
We now support direct solvers with mpi but not with pde systems.


Revision 6258 - Directory Listing
Modified Fri Jun 3 00:34:00 2016 UTC (18 months, 2 weeks ago) by caltinay
ditto for assertAlmostEquals


Revision 6257 - Directory Listing
Modified Fri Jun 3 00:30:37 2016 UTC (18 months, 2 weeks ago) by caltinay
s/assertEquals/assertEqual/g since the former is deprecated.


Revision 6247 - Directory Listing
Modified Thu Jun 2 02:35:41 2016 UTC (18 months, 2 weeks ago) by caltinay
Another change that may break things...
- added new TristateVariable to scons
- use it only for lapack for now whose value now defaults to 'auto', i.e.
   if mkl is installed, use it, otherwise try to link with atlas, all
   unless longindices is True.
- updated options files accordingly.


Revision 6241 - Directory Listing
Modified Wed Jun 1 06:00:06 2016 UTC (18 months, 2 weeks ago) by caltinay
**Warning, this may break your build**
- Bumped required options version to 203 - new options for trilinos, paso, weipa
- scons/templates/README_FIRST is now the file that explains all the options,
  added comment to README but need to change install guide still.
- removed some obsolete options files
- removed most comments from template files, they now refer to README_FIRST
- removed usepython3 option as we now determine this based on python version
  string.
- enabled use of numpy.h with python 3 (last commit should have fixed the
  issues)


Revision 6240 - Directory Listing
Modified Wed Jun 1 05:52:38 2016 UTC (18 months, 2 weeks ago) by caltinay
WrappedArray is now compatible with python 3, i.e. we can now use numpy.h
with python 3.


Revision 6239 - Directory Listing
Modified Wed Jun 1 01:34:54 2016 UTC (18 months, 2 weeks ago) by caltinay
intialize sin_zero to be on the safe side (CID 99655)


Revision 6233 - Directory Listing
Modified Mon May 30 23:45:53 2016 UTC (18 months, 2 weeks ago) by caltinay
i broke the other end. Hope this fixes it.


Revision 6229 - Directory Listing
Modified Sun May 29 10:42:41 2016 UTC (18 months, 2 weeks ago) by caltinay
how on earth did we miss this before??!


Revision 6228 - Directory Listing
Modified Sat May 28 10:21:18 2016 UTC (18 months, 3 weeks ago) by caltinay
non-mpi is a thing

Revision 6227 - Directory Listing
Modified Fri May 27 09:59:21 2016 UTC (18 months, 3 weeks ago) by caltinay
change to a cppunit assertion which currently fails on guineapig to make it
output a sane error.

The reason for the failure is not entirely clear.
We are closing a parallel file which, according to doco, is a collective
operation, however the subsequent check for file size almost certainly returns
the wrong value on at least one rank.
This could be easily fixed by a barrier but we never saw this behaviour so
I suggest we investigate.


Revision 6225 - Directory Listing
Modified Fri May 27 01:47:50 2016 UTC (18 months, 3 weeks ago) by caltinay
fixed deprecation warning


Revision 6217 - Directory Listing
Modified Mon May 23 06:57:40 2016 UTC (18 months, 3 weeks ago) by caltinay
increase GS sweeps once more.


Revision 6202 - Directory Listing
Modified Thu May 5 04:47:09 2016 UTC (19 months, 2 weeks ago) by caltinay
slightly better error messages on test failure in pdetools.


Revision 6201 - Directory Listing
Modified Thu May 5 04:32:02 2016 UTC (19 months, 2 weeks ago) by caltinay
re-increase num GS sweeps in test now that it succeeds with paso. Trilinos
requires this


Revision 6198 - Directory Listing
Modified Wed May 4 06:17:49 2016 UTC (19 months, 2 weeks ago) by caltinay
resetting number of GS sweeps to 1 in MINRES test. See bug #366


Revision 6197 - Directory Listing
Modified Fri Apr 29 14:02:32 2016 UTC (19 months, 2 weeks ago) by caltinay
moved Distribution struct to escript and updated domains accordingly.
We can now build the full escript suite without paso (-:


Revision 6196 - Directory Listing
Modified Thu Apr 28 03:38:25 2016 UTC (19 months, 3 weeks ago) by caltinay
It looks like there is an issue with paso's GAUSS-SEIDEL and parallel domains
where some ranks have no element, or similar(?)
Getting around this in the unit tests now by optimizing domain distribution,
obviously that only works with parmetis. Alternative would be to use slightly
larger test domains.


Revision 6195 - Directory Listing
Modified Thu Apr 28 01:10:46 2016 UTC (19 months, 3 weeks ago) by caltinay
more tweaking.


Revision 6194 - Directory Listing
Modified Wed Apr 27 23:46:30 2016 UTC (19 months, 3 weeks ago) by caltinay
lowering number of GS sweeps again to see if intel-hybrid likes it.


Revision 6187 - Directory Listing
Modified Wed Apr 27 03:36:18 2016 UTC (19 months, 3 weeks ago) by caltinay
don't test REC_ILU which has never been supported (and paso silently fell
back to Jacobi). Test ILUT instead which is not supported by paso either but
Trilinos.


Revision 6179 - Directory Listing
Modified Fri Apr 15 12:48:58 2016 UTC (20 months ago) by caltinay
ditto.


Revision 6178 - Directory Listing
Modified Fri Apr 15 10:43:52 2016 UTC (20 months ago) by caltinay
missed these.


Revision 6174 - Directory Listing
Modified Fri Apr 15 03:41:03 2016 UTC (20 months ago) by caltinay
Some reorganisation of EscriptParams and related changes.
We now distinguish between modifiable parameters and build features.
To interrogate the latter use:
escript::hasFeature()  [ python: escript.hasFeature() ]
and
escript::listFeatures() [ python: escript.listFeatures() ]

I have decided to add specific getters for the remaining few parameters to
avoid the penalty of string comparisons and to remove the wealth of friend
declarations with Data* classes.

Also made some changes in SConstruct to make sure we set *all* preprocessor
directives *before* building anything.

Still to do is dealing with checks for direct solver and gmsh. The latter needs
to be a runtime check rather than a compile time check.


Revision 6171 - Directory Listing
Modified Wed Apr 13 13:39:08 2016 UTC (20 months ago) by jfenwick
adding tests to tagged versions

Revision 6168 - Directory Listing
Modified Wed Apr 13 03:08:12 2016 UTC (20 months ago) by jfenwick
Making Lazy and the rest of escript use the same operator enumeration



Revision 6164 - Directory Listing
Modified Mon Apr 11 06:06:43 2016 UTC (20 months, 1 week ago) by jfenwick
Test fixes and more tests


Revision 6163 - Directory Listing
Modified Sun Apr 10 23:44:11 2016 UTC (20 months, 1 week ago) by jfenwick
Fix to prevent complex tests running with lazy.


Revision 6162 - Directory Listing
Modified Fri Apr 8 09:46:26 2016 UTC (20 months, 1 week ago) by caltinay
Data() constructor fix.


Revision 6159 - Directory Listing
Modified Fri Apr 8 06:22:04 2016 UTC (20 months, 1 week ago) by jfenwick
Non-backwards compatible change!

The way the Data constructor operates from python has been changed.
  Data(v, shape, functionspace, expand=True)
no longer works.
The keyword part is not allowed now.
This used to work automatically because boost recognised the name
and allowed use as a keyword.
To get complex to work, we now take (object, object, object, object)
and workout what the args mean in the function (which means keywords
are out).

Adds some additional tests for complex.


Revision 6154 - Directory Listing
Modified Thu Apr 7 02:52:30 2016 UTC (20 months, 1 week ago) by jfenwick
Complex fixes and a small number of tests


Revision 6147 - Directory Listing
Modified Wed Apr 6 07:57:22 2016 UTC (20 months, 1 week ago) by jfenwick
Complex changes

Testing reveals holes in the complex code big enough to
drive a truck through.
This commit means you will however need a slightly 
smaller truck



Revision 6145 - Directory Listing
Modified Wed Apr 6 06:28:57 2016 UTC (20 months, 1 week ago) by caltinay
now refraining from adding all libraries to all targets. So we don't link
unnecessary libraries, e.g. escript does not need parmetis etc...


Revision 6144 - Directory Listing
Modified Wed Apr 6 05:25:13 2016 UTC (20 months, 1 week ago) by caltinay
last round of namespacing defines.


Revision 6143 - Directory Listing
Modified Wed Apr 6 03:59:15 2016 UTC (20 months, 1 week ago) by caltinay
try to fix another warning.


Revision 6141 - Directory Listing
Modified Wed Apr 6 03:51:30 2016 UTC (20 months, 1 week ago) by caltinay
more namespacing of defines.


Revision 6140 - Directory Listing
Modified Wed Apr 6 03:17:31 2016 UTC (20 months, 1 week ago) by jfenwick
Eigenvectors for _some_ complex cases

escript is cowardly refusing to compute eigenvalues
for 3x3 complex matricies because the 3x3 alg has 
< in it.


Revision 6138 - Directory Listing
Modified Wed Apr 6 02:10:10 2016 UTC (20 months, 1 week ago) by caltinay
starting to 'namespace' our way too generic defines...


Revision 6137 - Directory Listing
Modified Wed Apr 6 01:57:52 2016 UTC (20 months, 1 week ago) by caltinay
new configure check for working complex std::acos


Revision 6136 - Directory Listing
Modified Wed Apr 6 01:45:53 2016 UTC (20 months, 1 week ago) by jfenwick
Swap axes for complex


Revision 6135 - Directory Listing
Modified Wed Apr 6 01:07:38 2016 UTC (20 months, 1 week ago) by jfenwick
transpose for complex


Revision 6134 - Directory Listing
Modified Wed Apr 6 00:48:07 2016 UTC (20 months, 1 week ago) by jfenwick
trace for non-constant data



Revision 6133 - Directory Listing
Modified Wed Apr 6 00:33:10 2016 UTC (20 months, 1 week ago) by jfenwick
trace() now supports complex


Revision 6131 - Directory Listing
Modified Tue Apr 5 23:55:59 2016 UTC (20 months, 1 week ago) by jfenwick
Bug fix and test for complex NaN replacement


Revision 6128 - Directory Listing
Modified Tue Apr 5 05:19:48 2016 UTC (20 months, 2 weeks ago) by jfenwick
Hopefully fix OSX problem.




Revision 6127 - Directory Listing
Modified Tue Apr 5 04:39:31 2016 UTC (20 months, 2 weeks ago) by jfenwick
Rename nonsymmetric to antisymmetric in tests



Revision 6125 - Directory Listing
Modified Tue Apr 5 04:12:13 2016 UTC (20 months, 2 weeks ago) by jfenwick
Fix incorrect behaviour of anti-symmetric for scalars.

Also add hermitian and antihermitian.
Very quick check looks ok but really not tested yet.


Revision 6124 - Directory Listing
Modified Tue Apr 5 03:23:12 2016 UTC (20 months, 2 weeks ago) by caltinay
Fixing python module build on OS X. Added PythonModule builder so we do this generically now.

Revision 6120 - Directory Listing
Modified Mon Apr 4 01:33:51 2016 UTC (20 months, 2 weeks ago) by caltinay
guilty as charged.


Revision 6119 - Directory Listing
Modified Sun Apr 3 23:36:59 2016 UTC (20 months, 2 weeks ago) by caltinay
merging trilinos branch to trunk.
We can now build with trilinos and use it instead of paso for single PDEs.
There are some more things to be done...


Revision 6114 - Directory Listing
Modified Fri Apr 1 03:37:52 2016 UTC (20 months, 2 weeks ago) by jfenwick
symmetric and antisymmetric now support complex

Also a number of methods are renamed from nonsymmetric


Revision 6112 - Directory Listing
Modified Thu Mar 31 09:40:10 2016 UTC (20 months, 2 weeks ago) by jfenwick
Relicense all the things!



Revision 6110 - Directory Listing
Modified Thu Mar 31 06:31:03 2016 UTC (20 months, 2 weeks ago) by jfenwick
Rename nonsymetric to antisymmetric.

nonsymmetric is now an alias to antisymmetric.
At some stage later, we can try to remove nonsymmetric



Revision 6107 - Directory Listing
Modified Thu Mar 31 00:47:21 2016 UTC (20 months, 2 weeks ago) by jfenwick
Use tags in test


Revision 6103 - Directory Listing
Modified Wed Mar 30 05:01:49 2016 UTC (20 months, 2 weeks ago) by jfenwick
Add variable to control using replacement acos on broken OSX

Revision 6102 - Directory Listing
Modified Wed Mar 30 05:00:20 2016 UTC (20 months, 2 weeks ago) by jfenwick
Add some missing functions.

There may be others


Revision 6099 - Directory Listing
Modified Tue Mar 29 03:50:14 2016 UTC (20 months, 3 weeks ago) by jfenwick
Don't expect an exception is we aren't doing that check.


Revision 6098 - Directory Listing
Modified Tue Mar 29 02:21:44 2016 UTC (20 months, 3 weeks ago) by jfenwick
Remove "within object" checks for sharing from normal codepath

Something about the way the checks were being done, slowed things down.
Now, you will only get those checks if you define SLOWSHARECHECK



Revision 6097 - Directory Listing
Modified Sun Mar 27 03:31:00 2016 UTC (20 months, 3 weeks ago) by jfenwick
Tricky race condition hidden in duplicate code

Not sure now why I needed two paths for this.



Revision 6096 - Directory Listing
Modified Sun Mar 27 03:30:14 2016 UTC (20 months, 3 weeks ago) by jfenwick
Don\'t know why the other builders didn't need this

Revision 6094 - Directory Listing
Modified Fri Mar 25 14:19:11 2016 UTC (20 months, 3 weeks ago) by jfenwick
Fix more tests.  Note needed to change example to add another import.

This isn't all of the problems fixed.
There is at least one more import os missing.
But it's late.


Revision 6093 - Directory Listing
Modified Thu Mar 24 07:18:55 2016 UTC (20 months, 3 weeks ago) by jfenwick
Removing unintended inclusions in __all__ for esys.escript

Patched some unit tests which were affected.


Revision 6092 - Directory Listing
Modified Thu Mar 24 05:43:00 2016 UTC (20 months, 3 weeks ago) by jfenwick
Adding some complex versions to ops.

And some tests but not enough yet


Revision 6091 - Directory Listing
Modified Thu Mar 24 04:52:53 2016 UTC (20 months, 3 weeks ago) by jfenwick
Fix race condition in checking for sharing.

Bit tricky to find this one.


Revision 6088 - Directory Listing
Modified Wed Mar 23 00:44:58 2016 UTC (20 months, 3 weeks ago) by jfenwick
Removing old shared tracking


Revision 6087 - Directory Listing
Modified Tue Mar 22 22:32:12 2016 UTC (20 months, 3 weeks ago) by jfenwick
Fixing tests


Revision 6086 - Directory Listing
Modified Tue Mar 22 09:54:51 2016 UTC (20 months, 3 weeks ago) by jfenwick
Trying to switch over to using shared_ptr.use_count()

Let's see how the buildbot likes it


Revision 6084 - Directory Listing
Modified Tue Mar 22 04:23:02 2016 UTC (20 months, 4 weeks ago) by jfenwick
Renaming headers for (hopefully) easier understanding



Revision 6083 - Directory Listing
Modified Tue Mar 22 03:30:18 2016 UTC (20 months, 4 weeks ago) by jfenwick
Removing the DataMaths namespace


Revision 6082 - Directory Listing
Modified Tue Mar 22 02:57:49 2016 UTC (20 months, 4 weeks ago) by jfenwick
More cleanup

Moving some includes around.
The plan is to rename some includes to better reflect their purpose.
Removing inheritance from std::binary_function   (since that is deprecated).
Replacing some doubles with real_t.



Revision 6076 - Directory Listing
Modified Fri Mar 18 12:06:46 2016 UTC (21 months ago) by jfenwick
Fixing some namespaces and includes

Revision 6075 - Directory Listing
Modified Fri Mar 18 06:30:04 2016 UTC (21 months ago) by jfenwick
More code removal and test fixing.

A number of operations were tested via binaryOp
and unaryOp rather than via Data methods.
   I hope these operations 
are tested elsewhere.



Revision 6074 - Directory Listing
Modified Fri Mar 18 02:42:48 2016 UTC (21 months ago) by jfenwick
Starting to remove dead code.

DataAlgorithmAdapter is only used by the code which tests it.


Revision 6073 - Directory Listing
Modified Thu Mar 17 03:30:53 2016 UTC (21 months ago) by jfenwick
sigh use the correct version of abs()

Added test to detect this particular break again.


Revision 6072 - Directory Listing
Modified Thu Mar 17 00:34:01 2016 UTC (21 months ago) by jfenwick
Remove horrible debug output


Revision 6071 - Directory Listing
Modified Wed Mar 16 07:07:05 2016 UTC (21 months ago) by jfenwick
More test fixes. Better error message on TestDomain.

That throw should probably be an assert though


Revision 6070 - Directory Listing
Modified Wed Mar 16 07:05:32 2016 UTC (21 months ago) by jfenwick
Ensure that objects with no samples do not contribute to inf and sup.




Revision 6069 - Directory Listing
Modified Wed Mar 16 04:30:40 2016 UTC (21 months ago) by jfenwick
Passes a few more tests.

Some more bugfixes regarding empty processes.
For convienience, added DataAbstracts::hasNoSamples


Revision 6068 - Directory Listing
Modified Wed Mar 16 03:37:43 2016 UTC (21 months ago) by jfenwick
Remove some tests which expect illegal index lookups to throw.

Fix some other tests which try to compare results on empty procs


Revision 6067 - Directory Listing
Modified Wed Mar 16 02:47:38 2016 UTC (21 months ago) by caltinay
Back to having a single ESYS_ASSERT macro BUT when built with MPI we
are now merely printing the error message and calling MPI_Abort on COMM_WORLD.
My understanding is that this should work on subworlds as well as all
processes are part of COMM_WORLD...

Addresses #362


Revision 6066 - Directory Listing
Modified Tue Mar 15 06:42:55 2016 UTC (21 months ago) by jfenwick
Code path conversions.

TestDomain can now return a JMPI.
Some tests now use TestDomain (didn't want to undo all that work
from before I found the ASSERT fix).
Moving more code to new path.
Commenting out a bunch of old ops.



Revision 6065 - Directory Listing
Modified Tue Mar 15 06:29:38 2016 UTC (21 months ago) by jfenwick
A bit of a hack.

This can be improved. But the idea is to prevent checks from
throwing where no domain is available.


Revision 6064 - Directory Listing
Modified Mon Mar 14 01:06:18 2016 UTC (21 months ago) by jfenwick
Data::hasNoSamples()  now actually looks at how many samples we have.




Revision 6063 - Directory Listing
Modified Mon Mar 14 00:50:44 2016 UTC (21 months ago) by jfenwick
Fix to prevent new codepath from trying to act on locally empty data.

I've "corrected" the tests to do what I think is the correct thing.



Revision 6061 - Directory Listing
Modified Fri Mar 11 04:40:28 2016 UTC (21 months, 1 week ago) by caltinay
Undoing the switch to use MPI-aware assert in Data.h because some
functions are only called from a subset of ranks which would then
cause definite hangs due to the error reduction operation. We need
to find a better way of dealing with this.


Revision 6060 - Directory Listing
Modified Fri Mar 11 02:51:26 2016 UTC (21 months, 1 week ago) by caltinay
added an MPI-aware version of ESYS_ASSERT and replaced suitable places.
This will not fix the current buildbot hang as that is within a block
where we don't have a JMPI intance.


Revision 6057 - Directory Listing
Modified Thu Mar 10 06:00:58 2016 UTC (21 months, 1 week ago) by jfenwick
Well it passes my tests



Revision 6056 - Directory Listing
Modified Thu Mar 10 04:29:53 2016 UTC (21 months, 1 week ago) by jfenwick
Small fix - hard to find



Revision 6050 - Directory Listing
Modified Wed Mar 9 22:44:52 2016 UTC (21 months, 1 week ago) by caltinay
make it compile on savanna again.


Revision 6048 - Directory Listing
Modified Wed Mar 9 07:34:47 2016 UTC (21 months, 1 week ago) by jfenwick
Relocating binaryDataOp to Data.cpp



Revision 6047 - Directory Listing
Modified Wed Mar 9 07:25:42 2016 UTC (21 months, 1 week ago) by jfenwick
Removing code some code not used by new path



Revision 6046 - Directory Listing
Modified Wed Mar 9 07:05:48 2016 UTC (21 months, 1 week ago) by jfenwick
More pruning and switching

All self-update operations use the new path


Revision 6045 - Directory Listing
Modified Wed Mar 9 06:28:47 2016 UTC (21 months, 1 week ago) by jfenwick
Adding more operations to the alternate binary codepath




Revision 6043 - Directory Listing
Modified Wed Mar 9 04:44:10 2016 UTC (21 months, 1 week ago) by jfenwick
Making a macro


Revision 6042 - Directory Listing
Modified Wed Mar 9 04:30:36 2016 UTC (21 months, 1 week ago) by jfenwick
Preliminary to lazy cleanup


Lazy is not templated for complex as yet but hopefully
we can relieve the dependency on the briarpatch of
the current methods.



Revision 6039 - Directory Listing
Modified Wed Mar 9 01:56:34 2016 UTC (21 months, 1 week ago) by jfenwick
Enable alternate path.

Let's see what the buildbot thinks of it.


Revision 6038 - Directory Listing
Modified Wed Mar 9 01:32:00 2016 UTC (21 months, 1 week ago) by jfenwick
Bug fixes and function for unary ops.

This commit does not actually switch the alternate functionality on.
I'll do that separately


Revision 6037 - Directory Listing
Modified Wed Mar 9 01:28:53 2016 UTC (21 months, 1 week ago) by jfenwick
It turns out that explict can be helpful.



Revision 6034 - Directory Listing
Modified Wed Mar 9 00:37:57 2016 UTC (21 months, 1 week ago) by caltinay
a few changes to GroupTest / utest:
GroupTest class now takes a name parameter that is used as (shell) function
name in utest for the test group.
By default all tests are run as before but one can now do:
./utest.sh build '-t2' escriptcpp
to only run the escript c++ unit tests.
Also tweaked a couple things so utest.sh does now work with dash.


Revision 6033 - Directory Listing
Modified Wed Mar 9 00:13:29 2016 UTC (21 months, 1 week ago) by jfenwick
More tests for addition



Revision 6031 - Directory Listing
Modified Tue Mar 8 06:27:14 2016 UTC (21 months, 1 week ago) by caltinay
added a generic baseclass for PDE solver tests which is used by all domains.
Renamed test files to prepare for Trilinos merge at some point.


Revision 6028 - Directory Listing
Modified Mon Mar 7 05:55:01 2016 UTC (21 months, 1 week ago) by jfenwick
Modify TestDomain to generate correct coordinates in MPI.

This was breaking testing because the coords were inputs to the
testing function.


Revision 6025 - Directory Listing
Modified Fri Mar 4 05:47:57 2016 UTC (21 months, 2 weeks ago) by jfenwick
Added more tests for + operator.

This time we test inplace updates


Revision 6024 - Directory Listing
Modified Fri Mar 4 04:14:27 2016 UTC (21 months, 2 weeks ago) by jfenwick
Fixing testing.

Pulling alernative binary op skeleton.


Revision 6022 - Directory Listing
Modified Fri Mar 4 00:02:44 2016 UTC (21 months, 2 weeks ago) by jfenwick
Additional test for various combinations of Data

It turns out we didn't have good enough tests for binary operators
which try various combinations of types.
This adds a new test and extends TestDomain to allow control of
tags in use (and mapping of tags to samples)



Revision 6017 - Directory Listing
Modified Thu Mar 3 03:06:42 2016 UTC (21 months, 2 weeks ago) by caltinay
fixing a few more POSIX_C redefinition warnings.


Revision 6007 - Directory Listing
Modified Wed Mar 2 03:06:07 2016 UTC (21 months, 2 weeks ago) by caltinay
Fixed another exception hang case. Again this didn't trigger before
because we didn't run with >10 ranks.


Revision 6001 - Directory Listing
Modified Tue Mar 1 05:01:49 2016 UTC (21 months, 2 weeks ago) by caltinay
Bye bye esysUtils.
Also removed first.h as escript/DataTypes.h is now required everywhere
and fulfills that role by including a boost python header first.


Revision 6000 - Directory Listing
Modified Tue Mar 1 00:24:43 2016 UTC (21 months, 2 weeks ago) by caltinay
a few more include rearrangements.


Revision 5999 - Directory Listing
Modified Mon Feb 29 23:49:08 2016 UTC (21 months, 2 weeks ago) by caltinay
include reorder to try and get rid of POSIX_C... redef warnings.


Revision 5998 - Directory Listing
Modified Mon Feb 29 08:57:28 2016 UTC (21 months, 2 weeks ago) by caltinay
removed some macros and moved index.h to escript.


Revision 5997 - Directory Listing
Modified Mon Feb 29 07:24:47 2016 UTC (21 months, 2 weeks ago) by caltinay
moved esys MPI to escript.


Revision 5992 - Directory Listing
Modified Fri Feb 26 23:55:23 2016 UTC (21 months, 3 weeks ago) by jfenwick
Enable hasNaN and replaceNaN for complex


Revision 5991 - Directory Listing
Modified Fri Feb 26 23:11:08 2016 UTC (21 months, 3 weeks ago) by jfenwick
Enabling more ops for complex

Commenting out the templated C_TensorUnaryOperation.
Want to remove the equivalent binary versions as well


Revision 5989 - Directory Listing
Modified Fri Feb 26 07:00:48 2016 UTC (21 months, 3 weeks ago) by jfenwick
Enabling neg and exp for complex


Revision 5985 - Directory Listing
Modified Fri Feb 26 02:21:44 2016 UTC (21 months, 3 weeks ago) by jfenwick
Adding #define for namespace on dynamic_pointer_cast<>

Also for static_pointer_cast<>
The plan is to make it easy to switch between boost::
and std::  for shared_ptr

This will be important if we start to rely on more recent
share_ptr features (guaranteed to be in c++11 not necessarily in boost)


Revision 5984 - Directory Listing
Modified Fri Feb 26 02:00:45 2016 UTC (21 months, 3 weeks ago) by caltinay
Added IOError. Also started replacing some 'setError()' calls by exception
throws as the latest test failures are bogus because an error was set but
never checked for.


Revision 5983 - Directory Listing
Modified Thu Feb 25 07:18:06 2016 UTC (21 months, 3 weeks ago) by caltinay
bye bye DataC!
Fixes #248


Revision 5978 - Directory Listing
Modified Wed Feb 24 22:02:37 2016 UTC (21 months, 3 weeks ago) by caltinay
don't check for exception string contents.


Revision 5974 - Directory Listing
Modified Wed Feb 24 04:40:24 2016 UTC (21 months, 3 weeks ago) by caltinay
update some tests.


Revision 5973 - Directory Listing
Modified Wed Feb 24 04:27:52 2016 UTC (21 months, 3 weeks ago) by caltinay
trying to fix the "python include must come first" issue on savanna and
fix for serial build.


Revision 5972 - Directory Listing
Modified Wed Feb 24 04:05:30 2016 UTC (21 months, 3 weeks ago) by caltinay
Major rework of our exceptions. We now have specific
AssertException
NotImplementedError
ValueError
which translate to the corresponding python exception type.
I have gone through a few places and replaced things but not everywhere.



Revision 5970 - Directory Listing
Modified Tue Feb 23 08:30:40 2016 UTC (21 months, 3 weeks ago) by jfenwick
To keep the mac happy

Revision 5969 - Directory Listing
Modified Tue Feb 23 06:22:10 2016 UTC (21 months, 3 weeks ago) by caltinay
forgot to move file writer unit test.


Revision 5968 - Directory Listing
Modified Tue Feb 23 06:08:37 2016 UTC (21 months, 3 weeks ago) by caltinay
moved file writer to escript and added explicit link to escript in paso.


Revision 5967 - Directory Listing
Modified Tue Feb 23 05:46:09 2016 UTC (21 months, 3 weeks ago) by caltinay
found a few instances of MPI_COMM_WORLD and squashed them.
Added member to AbstractDomain that returns a JMPI so we ensure all
domains support that.
Moved appendRankToFilename into class.


Revision 5965 - Directory Listing
Modified Tue Feb 23 01:45:40 2016 UTC (21 months, 3 weeks ago) by caltinay
removed more useless #defines.


Revision 5964 - Directory Listing
Modified Tue Feb 23 01:20:19 2016 UTC (21 months, 3 weeks ago) by jfenwick
Hopefully fix the numpy/py3 bug



Revision 5960 - Directory Listing
Modified Mon Feb 22 05:37:05 2016 UTC (21 months, 3 weeks ago) by jfenwick
Support for setting data point values.


Revision 5958 - Directory Listing
Modified Mon Feb 22 01:05:32 2016 UTC (21 months, 3 weeks ago) by caltinay
moved random to escript.


Revision 5957 - Directory Listing
Modified Mon Feb 22 00:56:47 2016 UTC (21 months, 3 weeks ago) by jfenwick
Enable toListOfTuples

Expand some THROWONCOMPLEX macros for cases where the 
 situation is permanent.



Revision 5956 - Directory Listing
Modified Mon Feb 22 00:33:39 2016 UTC (21 months, 3 weeks ago) by jfenwick
Expanding some tabs. Replace more unaries

The where? family of functions is now done via the enum



Revision 5955 - Directory Listing
Modified Sun Feb 21 23:04:50 2016 UTC (21 months, 3 weeks ago) by caltinay
initialize member to avoid random segfaults in threaded mode.


Revision 5954 - Directory Listing
Modified Sun Feb 21 22:40:27 2016 UTC (21 months, 3 weeks ago) by caltinay
moved exception translators to escript.


Revision 5953 - Directory Listing
Modified Fri Feb 19 11:07:39 2016 UTC (21 months, 4 weeks ago) by caltinay
remove 'nasty hack' and fix a typo in escript.


Revision 5952 - Directory Listing
Modified Fri Feb 19 07:27:31 2016 UTC (21 months, 4 weeks ago) by caltinay
bye bye blocktimer.
I just tried to use it and the things it reports were plain wrong.
No wonder given the few places it was ever put in.
Also, it seems it has caused more problems than helped over the years
(see svn log).
If we are ever keen to time our code again we might as well do it properly
using PAPI or similar...
 


Revision 5949 - Directory Listing
Modified Fri Feb 19 06:06:01 2016 UTC (21 months, 4 weeks ago) by jfenwick
Do unary expanded ops in a single chunk for each thread to avoid multiple switches



Revision 5948 - Directory Listing
Modified Fri Feb 19 05:02:39 2016 UTC (21 months, 4 weeks ago) by caltinay
moved index_t & dim_t into escript::DataTypes and updated files
accordingly. Dudley needs a full sweep of namespacing at some not-distant
future.


Revision 5946 - Directory Listing
Modified Fri Feb 19 03:02:56 2016 UTC (21 months, 4 weeks ago) by caltinay
some baby steps towards removing esysUtils and making escript
our main library/module. Added real_t_max() and real_t_eps() functions.



Revision 5945 - Directory Listing
Modified Fri Feb 19 02:25:44 2016 UTC (21 months, 4 weeks ago) by jfenwick
Can now take .real() and .imag() on all types.

imag() on real is not especially efficient.
May want to look at how the local ops are called to
see if we can reduce the loop overhead (given that each call
incurs a switch() cost now).


Revision 5944 - Directory Listing
Modified Fri Feb 19 00:54:36 2016 UTC (21 months, 4 weeks ago) by jfenwick
Can now take conjugates of complexes

Also fixed a bug related to unary operations on complexes


Revision 5943 - Directory Listing
Modified Thu Feb 18 23:36:21 2016 UTC (21 months, 4 weeks ago) by jfenwick
Remove unused var


Revision 5938 - Directory Listing
Modified Thu Feb 18 06:30:35 2016 UTC (22 months ago) by jfenwick
Merging from 5937 on the complex branch

Some parts of complex work but all of it is
not unit tested and it is certainly not feature
complete (I haven't put any time into dealing with
subworld for complex).

The other important aspect of this merge is that
c++11 is now required to build escript.



Revision 5929 - Directory Listing
Modified Wed Feb 17 07:40:00 2016 UTC (22 months ago) by caltinay
Merged pasowrap into paso.
Unfortunately, this required touching quite a few files.
build_shared now defaults to true but will likely disappear altogether
once esysUtils disappears.


Revision 5923 - Directory Listing
Modified Mon Feb 15 03:39:22 2016 UTC (22 months ago) by jfenwick
Enable d+=d

Seems like an obscure case but it failed because
,in order to allow for possible interpolation, it
created a temporary object which looked to the lazy
system as if the data was suddenly shared.



Revision 5899 - Directory Listing
Modified Fri Feb 5 03:55:35 2016 UTC (22 months, 1 week ago) by caltinay
basically a no-op but c++11 rightfully complains that we're trying to
operator<< a stringstream object.


Revision 5863 - Directory Listing
Modified Wed Jan 13 02:25:48 2016 UTC (23 months ago) by jfenwick
Copyright dates updated.
\version for doxygen to read


Revision 5833 - Directory Listing
Modified Thu Nov 26 04:37:32 2015 UTC (2 years ago) by jfenwick
Fixing some lintian objections

Revision 5831 - Directory Listing
Modified Thu Nov 26 00:26:52 2015 UTC (2 years ago) by jfenwick
Produces what looks like correct answers on Jaco's example.

Still to do:
. Clean up extraneous output
. Doco on what the various variables do
. Discussion on difference between this mode and the normal
downunder. (Should the same changes be made to normal downunder?)
. Document more clearly assumptions which have been made. 
  - The only one which comes to mind is the one where only the 
    regularisation term actually matters for one of the calculations.
 


Revision 5828 - Directory Listing
Modified Mon Nov 23 00:43:19 2015 UTC (2 years ago) by jfenwick
Provide access to splitworld via the escript package


Revision 5813 - Directory Listing
Modified Tue Sep 29 03:48:17 2015 UTC (2 years, 2 months ago) by caltinay
Fixed a bug in saveDataCSV where mask could be on a different domain
and/or function space than the data objects.


Revision 5807 - Directory Listing
Modified Thu Sep 24 06:40:11 2015 UTC (2 years, 2 months ago) by caltinay
fix for non-MPI build


Revision 5806 - Directory Listing
Modified Thu Sep 24 06:36:22 2015 UTC (2 years, 2 months ago) by caltinay
DataExpanded: avoid lockups in dump() due to unnecessary MPI comms.
Also code cleanup.


Revision 5805 - Directory Listing
Modified Thu Sep 24 04:18:13 2015 UTC (2 years, 2 months ago) by caltinay
Cleanup in escript utils and use FileWriter to avoid code
duplication.
Also added sanity checks to FileWriter.


Revision 5799 - Directory Listing
Modified Tue Sep 22 06:54:28 2015 UTC (2 years, 2 months ago) by gross
fix for Bug #326

Revision 5792 - Directory Listing
Modified Wed Sep 16 05:01:47 2015 UTC (2 years, 3 months ago) by caltinay
Fixed typo in datamanager.


Revision 5791 - Directory Listing
Modified Wed Sep 16 02:24:07 2015 UTC (2 years, 3 months ago) by caltinay
x!=None -> x is not None fixes


Revision 5789 - Directory Listing
Modified Mon Sep 7 01:01:53 2015 UTC (2 years, 3 months ago) by caltinay
index_t fixes in DataExpanded.


Revision 5778 - Directory Listing
Modified Mon Aug 10 05:43:52 2015 UTC (2 years, 4 months ago) by jduplessis
added bessel function of first and second kind


Revision 5775 - Directory Listing
Modified Thu Jul 30 08:01:06 2015 UTC (2 years, 4 months ago) by sshaw
pushing release to trunk

Revision 5739 - Directory Listing
Modified Mon Jul 13 07:54:16 2015 UTC (2 years, 5 months ago) by jfenwick
Changing scoping for splitworld internals.
Experiments on hiding them to follow later.



Revision 5736 - Directory Listing
Modified Fri Jul 10 00:34:03 2015 UTC (2 years, 5 months ago) by sshaw
made namespace use consistent between header and cpp to help poor doxygen find the right functions

Revision 5731 - Directory Listing
Modified Thu Jul 9 02:27:37 2015 UTC (2 years, 5 months ago) by jfenwick
An attempt to provide some prior warning about situations described in issue#309.
If -DEXWRITECHK is defined, any attempt to get RW access to a data object
without requireWrite() will throw an exception.

This does not ultimately address the issue of dirac but will hopefully
catch problems.


Revision 5727 - Directory Listing
Modified Wed Jul 8 04:29:40 2015 UTC (2 years, 5 months ago) by sshaw
correcting exception message text


Revision 5721 - Directory Listing
Modified Fri Jul 3 04:06:55 2015 UTC (2 years, 5 months ago) by jfenwick
Fixing tests to account for MultiBrick's non-MPI ness


Revision 5717 - Directory Listing
Modified Thu Jul 2 04:39:14 2015 UTC (2 years, 5 months ago) by sshaw
some minor cleanup of splitworlds


Revision 5716 - Directory Listing
Modified Thu Jul 2 04:24:13 2015 UTC (2 years, 5 months ago) by jfenwick
Avoid aliased buffer


Revision 5715 - Directory Listing
Modified Thu Jul 2 01:37:02 2015 UTC (2 years, 5 months ago) by jfenwick
Some unit test updates


Revision 5711 - Directory Listing
Modified Tue Jun 30 05:15:54 2015 UTC (2 years, 5 months ago) by sshaw
fixing doxygen warnings


Revision 5707 - Directory Listing
Modified Mon Jun 29 03:59:06 2015 UTC (2 years, 5 months ago) by sshaw
adding copyright headers to files without copyright info, moved header to top of file in some cases where it wasn't

Revision 5706 - Directory Listing
Modified Mon Jun 29 03:41:36 2015 UTC (2 years, 5 months ago) by sshaw
all python files now force use of python3 prints and division syntax to stop sneaky errors appearing in py3 environs

Revision 5705 - Directory Listing
Modified Mon Jun 29 01:07:07 2015 UTC (2 years, 5 months ago) by sshaw
no more tab characters in python files

Revision 5703 - Directory Listing
Modified Mon Jun 29 00:56:26 2015 UTC (2 years, 5 months ago) by jfenwick
Adding/fixing split world tests for domains except speckley


Revision 5697 - Directory Listing
Modified Fri Jun 26 04:29:19 2015 UTC (2 years, 5 months ago) by jfenwick
Now we consider MPI_COMM_NULL in the MPI wrapper constructor
Added checks to see if reductions can clash
Make use of our MPI wrapper
Remove the unused "active" param.
Added a missing const 




Revision 5685 - Directory Listing
Modified Wed Jun 24 04:53:16 2015 UTC (2 years, 5 months ago) by sshaw
no more unexpected multi-process DIRECT exceptions in tests, no more unexpected direct solver missing exceptions in tests


Revision 5683 - Directory Listing
Modified Wed Jun 24 02:00:12 2015 UTC (2 years, 5 months ago) by jfenwick
Removing debug output.
SUM variables now reset properly.
More forms of reduction supported.


Revision 5680 - Directory Listing
Modified Tue Jun 23 01:55:20 2015 UTC (2 years, 5 months ago) by jfenwick
Bug fixes exposed by unit tests


Revision 5679 - Directory Listing
Modified Tue Jun 23 01:52:59 2015 UTC (2 years, 5 months ago) by jfenwick
More informative error messages for people acting on DataEmpty

Revision 5672 - Directory Listing
Modified Mon Jun 22 01:14:00 2015 UTC (2 years, 5 months ago) by jduplessis
added other solver methods. Also made error message more clear


Revision 5669 - Directory Listing
Modified Fri Jun 19 05:18:05 2015 UTC (2 years, 6 months ago) by sshaw
trying to set a DIRECT solver method without libsuitesparse throws an exception


Revision 5664 - Directory Listing
Modified Thu Jun 18 23:34:12 2015 UTC (2 years, 6 months ago) by sshaw
making the pdetools.Defect class abstract methods more obvious in documentation


Revision 5663 - Directory Listing
Modified Thu Jun 18 07:09:05 2015 UTC (2 years, 6 months ago) by jfenwick
Further progress but still not right

Revision 5659 - Directory Listing
Modified Thu Jun 18 01:35:56 2015 UTC (2 years, 6 months ago) by caltinay
some typo and whitespace fixes


Revision 5657 - Directory Listing
Modified Wed Jun 17 07:23:39 2015 UTC (2 years, 6 months ago) by jfenwick
SUM type variables, no longer accumulate forever

Revision 5654 - Directory Listing
Modified Mon Jun 15 05:21:00 2015 UTC (2 years, 6 months ago) by jfenwick
further

Revision 5651 - Directory Listing
Modified Sun Jun 14 23:24:48 2015 UTC (2 years, 6 months ago) by jfenwick
turns out the consts are important

Revision 5649 - Directory Listing
Modified Sun Jun 14 06:38:00 2015 UTC (2 years, 6 months ago) by jfenwick
Got stuck

Revision 5648 - Directory Listing
Modified Sat Jun 13 04:36:22 2015 UTC (2 years, 6 months ago) by jfenwick
Can now get doubles out of python reducers


Revision 5647 - Directory Listing
Modified Fri Jun 12 05:16:33 2015 UTC (2 years, 6 months ago) by jfenwick
Fixed the getPyObj on MPIDataReducer.
Note: the boost::python::object constructor can do things implicit conversion can't.


Revision 5646 - Directory Listing
Modified Fri Jun 12 04:04:58 2015 UTC (2 years, 6 months ago) by sshaw
some more python3 fixing, better sorting of dicts/sets->lists for some cases

Revision 5645 - Directory Listing
Modified Fri Jun 12 02:56:30 2015 UTC (2 years, 6 months ago) by jfenwick
more

Revision 5643 - Directory Listing
Modified Thu Jun 11 22:50:48 2015 UTC (2 years, 6 months ago) by jfenwick
adding set only reducer

Revision 5641 - Directory Listing
Modified Thu Jun 11 05:59:46 2015 UTC (2 years, 6 months ago) by sshaw
adjusted dict->list conversions to be deterministic under python3 (fixes ranks operating on elements in different orders)

Revision 5638 - Directory Listing
Modified Wed Jun 10 03:45:27 2015 UTC (2 years, 6 months ago) by jfenwick
fixing tabs and updating options file

Revision 5637 - Directory Listing
Modified Wed Jun 10 03:34:10 2015 UTC (2 years, 6 months ago) by jfenwick
further

Revision 5631 - Directory Listing
Modified Thu Jun 4 07:13:11 2015 UTC (2 years, 6 months ago) by jfenwick
More


Revision 5627 - Directory Listing
Modified Thu Jun 4 01:26:55 2015 UTC (2 years, 6 months ago) by caltinay
Fixed a few gcc 5 warnings.


Revision 5622 - Directory Listing
Modified Thu May 28 02:37:12 2015 UTC (2 years, 6 months ago) by jfenwick
Small improvements towards split inversion


Revision 5603 - Directory Listing
Modified Mon May 4 04:15:50 2015 UTC (2 years, 7 months ago) by jfenwick
Fix unintended revert in copyright

Revision 5601 - Directory Listing
Modified Mon May 4 03:25:18 2015 UTC (2 years, 7 months ago) by jfenwick
Now with correct priorities for alternatives, paths to overlord binary, other fixes

Revision 5593 - Directory Listing
Modified Fri Apr 24 01:36:26 2015 UTC (2 years, 7 months ago) by jfenwick
Fixing institution name to comply with policy

Revision 5575 - Directory Listing
Modified Wed Apr 1 03:17:22 2015 UTC (2 years, 8 months ago) by sshaw
sphinx now builds python doco including module-level docstrings and class __init__ docstrings, also cleared up some doco errors and added multires documentation

Revision 5572 - Directory Listing
Modified Mon Mar 30 03:13:13 2015 UTC (2 years, 8 months ago) by sshaw
altering NullDomain's reported function space type code to avoid collisions with real domains


Revision 5565 - Directory Listing
Modified Thu Mar 26 21:52:47 2015 UTC (2 years, 8 months ago) by jfenwick
That python define problem

Revision 5563 - Directory Listing
Modified Thu Mar 26 07:03:32 2015 UTC (2 years, 8 months ago) by jfenwick
Fixed indenting and accounted for py3 RuntimeException not having .message


Revision 5562 - Directory Listing
Modified Thu Mar 26 01:36:21 2015 UTC (2 years, 8 months ago) by jfenwick
More split world functions

Revision 5561 - Directory Listing
Modified Thu Mar 26 01:33:52 2015 UTC (2 years, 8 months ago) by jfenwick
Improving error message on interpolation failure.

Revision 5557 - Directory Listing
Modified Wed Mar 25 01:34:51 2015 UTC (2 years, 8 months ago) by caltinay
do not expose 'duv'.


Revision 5527 - Directory Listing
Modified Wed Mar 11 03:48:13 2015 UTC (2 years, 9 months ago) by sshaw
test dependencies now use desired build path as check


Revision 5516 - Directory Listing
Modified Sun Mar 8 23:56:39 2015 UTC (2 years, 9 months ago) by jfenwick
hopefully fix mac problem

Revision 5498 - Directory Listing
Modified Thu Feb 26 06:39:12 2015 UTC (2 years, 9 months ago) by sshaw
fixing broken header guard

Revision 5496 - Directory Listing
Modified Thu Feb 26 00:36:29 2015 UTC (2 years, 9 months ago) by sshaw
fixing a missing build dependency of pythonMPI existing before individual tests are run

Revision 5493 - Directory Listing
Modified Tue Feb 24 22:37:24 2015 UTC (2 years, 9 months ago) by jfenwick
Added forgotten files

Revision 5492 - Directory Listing
Modified Tue Feb 24 09:33:32 2015 UTC (2 years, 9 months ago) by jfenwick
fixed linking problem

Revision 5490 - Directory Listing
Modified Tue Feb 24 05:54:13 2015 UTC (2 years, 9 months ago) by jfenwick
Renaming the reducer root include and adding missing files


Revision 5489 - Directory Listing
Modified Tue Feb 24 05:12:12 2015 UTC (2 years, 9 months ago) by jfenwick
splitting reducer files

Revision 5481 - Directory Listing
Modified Wed Feb 18 05:07:25 2015 UTC (2 years, 10 months ago) by sshaw
fixing a memory leak in the new MPI wrapper, along with some comment updating to satisfy doxygen a bit better

Revision 5480 - Directory Listing
Modified Wed Feb 18 04:35:50 2015 UTC (2 years, 10 months ago) by jfenwick
Stage 1 of removing escriptDataC



Revision 5476 - Directory Listing
Modified Wed Feb 18 00:02:32 2015 UTC (2 years, 10 months ago) by jfenwick
passing tests on badger

Revision 5474 - Directory Listing
Modified Tue Feb 17 04:08:35 2015 UTC (2 years, 10 months ago) by jfenwick
Fix for one of the splitworld test issues

Revision 5470 - Directory Listing
Modified Mon Feb 16 04:23:17 2015 UTC (2 years, 10 months ago) by jfenwick
Fix some more. Make savanna warnings into errors.

Revision 5469 - Directory Listing
Modified Mon Feb 16 04:03:24 2015 UTC (2 years, 10 months ago) by jfenwick
fixes I forgot to commit

Revision 5467 - Directory Listing
Modified Mon Feb 16 00:24:20 2015 UTC (2 years, 10 months ago) by jfenwick
Removing DBADPYTHONMACRO workarounds

Revision 5465 - Directory Listing
Modified Mon Feb 16 00:03:05 2015 UTC (2 years, 10 months ago) by jfenwick
We now have an arena where any headers which insist on being first
because they do bad things, can battle to the death.

esysutils/first.h

should only be included in .cpp files.
#define the macros for the features you need in that .cpp

For this to work, any such claims to primacy must be resolved in
first.h, so please don't try to hack pretenders to the throne into the
include hierachy.

Next, will be removing some older attempts at the same thing.




Revision 5464 - Directory Listing
Modified Sat Feb 14 00:25:03 2015 UTC (2 years, 10 months ago) by jfenwick
Fix for python compile warnings

Revision 5461 - Directory Listing
Modified Fri Feb 13 04:37:51 2015 UTC (2 years, 10 months ago) by jfenwick
Passes some tests. Still has bug

Revision 5460 - Directory Listing
Modified Fri Feb 13 04:29:26 2015 UTC (2 years, 10 months ago) by sshaw
removing permanently true comparison that blocks compilation with -Werror=type-limits

Revision 5458 - Directory Listing
Modified Wed Feb 11 03:05:41 2015 UTC (2 years, 10 months ago) by jfenwick
Adding max and min as reduction operations

Revision 5457 - Directory Listing
Modified Tue Feb 10 04:51:15 2015 UTC (2 years, 10 months ago) by jfenwick
adjust globalvarinfo to account for automatic import assumptions

Revision 5456 - Directory Listing
Modified Tue Feb 10 01:41:59 2015 UTC (2 years, 10 months ago) by jfenwick
Tidier. Debugging HO!

Revision 5455 - Directory Listing
Modified Tue Feb 10 01:27:57 2015 UTC (2 years, 10 months ago) by jfenwick
more pruning

Revision 5454 - Directory Listing
Modified Tue Feb 10 00:49:28 2015 UTC (2 years, 10 months ago) by jfenwick
improvements and compilability

Revision 5453 - Directory Listing
Modified Mon Feb 9 23:46:17 2015 UTC (2 years, 10 months ago) by jfenwick
Passes simple test with auto imports, still in need of cleanup

Revision 5452 - Directory Listing
Modified Mon Feb 9 03:39:06 2015 UTC (2 years, 10 months ago) by sshaw
fixing wrong equality

Revision 5451 - Directory Listing
Modified Mon Feb 9 02:58:12 2015 UTC (2 years, 10 months ago) by jfenwick
updates

Revision 5450 - Directory Listing
Modified Mon Feb 9 01:39:26 2015 UTC (2 years, 10 months ago) by sshaw
Solving MPI gmsh invocation race conditions via network-IPC with the help of escript-overlord.
I, for one, welcome it.


Revision 5448 - Directory Listing
Modified Fri Feb 6 05:31:37 2015 UTC (2 years, 10 months ago) by jfenwick
Updating all the dates

Revision 5447 - Directory Listing
Modified Fri Feb 6 04:52:30 2015 UTC (2 years, 10 months ago) by jfenwick
Changes to subworlds

Revision 5446 - Directory Listing
Modified Thu Feb 5 04:34:12 2015 UTC (2 years, 10 months ago) by jduplessis
removed random file opens


Revision 5445 - Directory Listing
Modified Thu Feb 5 04:02:54 2015 UTC (2 years, 10 months ago) by jduplessis
0 rather than 1 equals error for gmshpy


Revision 5444 - Directory Listing
Modified Tue Feb 3 08:02:56 2015 UTC (2 years, 10 months ago) by jfenwick
Fixing intel warning

Revision 5443 - Directory Listing
Modified Tue Feb 3 07:11:01 2015 UTC (2 years, 10 months ago) by jfenwick
Adding local value import. Remote import still to do

Revision 5425 - Directory Listing
Modified Wed Jan 21 06:17:21 2015 UTC (2 years, 10 months ago) by jfenwick
Fix build error and add comment

Revision 5424 - Directory Listing
Modified Wed Jan 21 04:29:51 2015 UTC (2 years, 10 months ago) by jfenwick
Tweaks to parallel

Revision 5419 - Directory Listing
Modified Wed Jan 14 09:14:05 2015 UTC (2 years, 11 months ago) by jfenwick
Make tests write to the correct directories

Revision 5418 - Directory Listing
Modified Wed Jan 14 05:34:55 2015 UTC (2 years, 11 months ago) by jfenwick
Fixing some unit test failures on osx

Revision 5407 - Directory Listing
Modified Thu Dec 18 02:48:24 2014 UTC (3 years ago) by jfenwick
release changes

Revision 5402 - Directory Listing
Modified Wed Dec 17 05:44:00 2014 UTC (3 years ago) by jfenwick
True location of runMPIProgram

Revision 5397 - Directory Listing
Modified Wed Dec 17 01:35:43 2014 UTC (3 years ago) by caltinay
new, single interface to gmsh in escriptcore used by pycad and downunder.


Revision 5339 - Directory Listing
Modified Thu Dec 11 00:08:58 2014 UTC (3 years ago) by sshaw
added an exception for trying to set an escript param that doesn't exist

Revision 5336 - Directory Listing
Modified Wed Dec 10 05:23:51 2014 UTC (3 years ago) by jfenwick
Making params more visible

Revision 5322 - Directory Listing
Modified Tue Dec 9 03:53:35 2014 UTC (3 years ago) by jfenwick
Added NETCDF_BUILD to escript params. Tests now check this before testing netcdf dependent stuff

Revision 5320 - Directory Listing
Modified Tue Dec 9 01:39:46 2014 UTC (3 years ago) by sshaw
new EscriptParam GMSH_SUPPORT and GMSH_MPI for use in python-land, included associated exceptions in DCRes gmsh use and assocaiated skips in relevant tests

Revision 5304 - Directory Listing
Modified Thu Dec 4 06:29:13 2014 UTC (3 years ago) by caltinay
make MPI build work again.


Revision 5303 - Directory Listing
Modified Thu Dec 4 06:17:11 2014 UTC (3 years ago) by jfenwick
Changes to keep clang happy

Revision 5294 - Directory Listing
Modified Wed Dec 3 05:30:18 2014 UTC (3 years ago) by sshaw
working around oddness when catching ImportErrors after catching a propagated ImportError, cleaning up last of finley examples without domain checks

Revision 5291 - Directory Listing
Modified Wed Dec 3 03:55:26 2014 UTC (3 years ago) by jfenwick
version number hack to allow older versions to run

Revision 5287 - Directory Listing
Modified Tue Dec 2 05:36:36 2014 UTC (3 years ago) by jfenwick
Fix for bug#284. Added dummify=False to lambdify calls.

Revision 5285 - Directory Listing
Modified Tue Dec 2 00:52:50 2014 UTC (3 years ago) by jfenwick
Fixed array overflow issue#285

Revision 5278 - Directory Listing
Modified Thu Nov 27 00:25:49 2014 UTC (3 years ago) by sshaw
sphinxifying older style python doco, including order shifting of module doc

Revision 5273 - Directory Listing
Modified Tue Nov 18 01:08:29 2014 UTC (3 years, 1 month ago) by caltinay
fixing some intel warnings.


Revision 5272 - Directory Listing
Modified Tue Nov 18 00:56:54 2014 UTC (3 years, 1 month ago) by sshaw
adding coupler doco, adjusting sphinx to use a math extension to deal with many warnings

Revision 5261 - Directory Listing
Modified Thu Nov 13 04:40:28 2014 UTC (3 years, 1 month ago) by jfenwick
uint ->unsigned int;  using namespace std in speckly Rectangle to allow isnan to work.

Revision 5259 - Directory Listing
Modified Wed Nov 12 01:20:34 2014 UTC (3 years, 1 month ago) by jfenwick
fixed error which I did not know about

Revision 5258 - Directory Listing
Modified Tue Nov 11 04:29:54 2014 UTC (3 years, 1 month ago) by sshaw
replacing a sleep with an MPIbarrier because it's much, much faster in block testing

Revision 5257 - Directory Listing
Modified Tue Nov 11 04:11:28 2014 UTC (3 years, 1 month ago) by sshaw
added a flush and delay to fix race conditions hiding testing summaries from rank zero


Revision 5256 - Directory Listing
Modified Tue Nov 11 03:18:41 2014 UTC (3 years, 1 month ago) by jfenwick
Doesn't work yet but getting some subworld changes in.


Revision 5246 - Directory Listing
Modified Fri Nov 7 01:41:18 2014 UTC (3 years, 1 month ago) by sshaw
adding speckley->ripley MPI Brick coupling for single axis subdivisions

Revision 5235 - Directory Listing
Modified Wed Oct 29 01:01:44 2014 UTC (3 years, 1 month ago) by caltinay
Tweaks to the forward model tests and finally silenced all but rank 0
for unit test output. I don't think this will hide useful info as all
ranks should output the same thing by the TextTestRunner...


Revision 5228 - Directory Listing
Modified Mon Oct 27 23:31:46 2014 UTC (3 years, 1 month ago) by caltinay
updated UMFPACK def in places...


Revision 5226 - Directory Listing
Modified Mon Oct 27 05:04:07 2014 UTC (3 years, 1 month ago) by sshaw
extending speckley->ripley interpolation to support MPI


Revision 5191 - Directory Listing
Modified Thu Oct 2 04:40:20 2014 UTC (3 years, 2 months ago) by sshaw
adding speckley to ripley interpolation (single process only)

Revision 5187 - Directory Listing
Modified Wed Oct 1 06:49:24 2014 UTC (3 years, 2 months ago) by caltinay
escript, paso, ripley now compiles with index type long.


Revision 5183 - Directory Listing
Modified Tue Sep 30 05:55:37 2014 UTC (3 years, 2 months ago) by caltinay
More long-index work. Added scons option 'longindices'.
Parts will not compile yet if set to true.


Revision 5156 - Directory Listing
Modified Wed Sep 17 00:40:33 2014 UTC (3 years, 3 months ago) by caltinay
intel 15 doesn't like this.


Revision 5148 - Directory Listing
Modified Mon Sep 15 01:25:23 2014 UTC (3 years, 3 months ago) by caltinay
Merging ripley diagonal storage + CUDA support into trunk.
Options file version has been incremented due to new options
'cuda' and 'nvccflags'.


Revision 5121 - Directory Listing
Modified Wed Aug 20 10:32:40 2014 UTC (3 years, 3 months ago) by caltinay
Made more methods pure virtual in AbstractDomain and moved the generic
implementation into NullDomain.
Made TestDomain derive from NullDomain to inherit the methods.


Revision 5110 - Directory Listing
Modified Fri Aug 1 05:04:59 2014 UTC (3 years, 4 months ago) by jduplessis
replaced atomic with critical


Revision 5109 - Directory Listing
Modified Fri Aug 1 04:39:53 2014 UTC (3 years, 4 months ago) by jduplessis
fix indentation


Revision 5101 - Directory Listing
Modified Tue Jul 15 09:50:20 2014 UTC (3 years, 5 months ago) by caltinay
Fixed another race with file deletion.


Revision 5099 - Directory Listing
Modified Mon Jul 14 00:41:14 2014 UTC (3 years, 5 months ago) by caltinay
Fix recent mpi test failures by giving ranks>0 some time to check their
output before deleting test files.


Revision 5093 - Directory Listing
Modified Tue Jul 8 01:54:09 2014 UTC (3 years, 5 months ago) by jfenwick
Document range of random number generator.


Revision 5090 - Directory Listing
Modified Wed Jul 2 05:14:11 2014 UTC (3 years, 5 months ago) by jduplessis
tests for replace and has NaN


Revision 5072 - Directory Listing
Modified Mon Jun 23 05:13:30 2014 UTC (3 years, 5 months ago) by jduplessis
paralelize hasNaN and replaceNaN


Revision 5069 - Directory Listing
Modified Fri Jun 20 06:54:20 2014 UTC (3 years, 5 months ago) by sshaw
fixing mismatching identifiers

Revision 5066 - Directory Listing
Modified Fri Jun 20 06:04:02 2014 UTC (3 years, 5 months ago) by sshaw
fixing python 3 breakage

Revision 5059 - Directory Listing
Modified Fri Jun 20 03:10:19 2014 UTC (3 years, 6 months ago) by sshaw
more test renames, more marking non-test classes, fixed broken test in run_xml

Revision 5056 - Directory Listing
Modified Fri Jun 20 01:37:28 2014 UTC (3 years, 6 months ago) by jduplessis
replace nan stuff

Revision 5050 - Directory Listing
Modified Wed Jun 18 04:17:54 2014 UTC (3 years, 6 months ago) by sshaw
more comment cleanup

Revision 5029 - Directory Listing
Modified Wed Jun 11 23:52:36 2014 UTC (3 years, 6 months ago) by caltinay
Continuing the compiler assistance package...


Revision 5024 - Directory Listing
Modified Tue Jun 10 08:46:07 2014 UTC (3 years, 6 months ago) by jfenwick
Fixing more == None


Revision 5023 - Directory Listing
Modified Tue Jun 10 06:37:50 2014 UTC (3 years, 6 months ago) by jfenwick
Replacing ==None and variants with is None in accordance with new warnings.


Revision 5021 - Directory Listing
Modified Tue Jun 10 04:44:52 2014 UTC (3 years, 6 months ago) by jfenwick
Making == and != on Data objects throw exceptions to warn people that they probably don't do what they might think they do.
Credit to Jaco and Cihan.


Revision 5020 - Directory Listing
Modified Tue Jun 10 04:07:00 2014 UTC (3 years, 6 months ago) by caltinay
remember the good ol' days where no newline at end of files were frowned upon? 
Thanks to crayc++ they're back.


Revision 5017 - Directory Listing
Modified Tue Jun 10 02:16:18 2014 UTC (3 years, 6 months ago) by sshaw
scons now runs tests via a testrunner to collect lists of skipped tests in build/ (examples have their own builder since they aren't unit tests)
fixed hessian regularisation tests falling over by adding a shortcircuit optional arg that returns the pde, not the solution
added missing/omitted tests back into scons tests


Revision 5003 - Directory Listing
Modified Fri Jun 6 00:34:33 2014 UTC (3 years, 6 months ago) by sshaw
a more forgiving test class prefix check

Revision 5000 - Directory Listing
Modified Thu Jun 5 23:33:16 2014 UTC (3 years, 6 months ago) by jfenwick
Recent release of g++ no longer accepts isnan outside of the std namespace.
Added a general using namespace std _inside_ the function to catch both cases.

Also, 5000th commit


Revision 4999 - Directory Listing
Modified Thu Jun 5 06:39:52 2014 UTC (3 years, 6 months ago) by jfenwick
Fixing weirdness


Revision 4998 - Directory Listing
Modified Thu Jun 5 06:03:08 2014 UTC (3 years, 6 months ago) by jduplessis
implemented hasNaN


Revision 4994 - Directory Listing
Modified Thu Jun 5 03:04:57 2014 UTC (3 years, 6 months ago) by jfenwick
Ensure isnan calls the c++ version except on windows compilers


Revision 4989 - Directory Listing
Modified Wed Jun 4 06:22:36 2014 UTC (3 years, 6 months ago) by sshaw
marking pdetools.Defect as abstract in doco and preventing it from silently returning lots of zeroes instead of being subclassed

Revision 4984 - Directory Listing
Modified Mon Jun 2 02:50:34 2014 UTC (3 years, 6 months ago) by sshaw
revamping testrunners, now uses automated discovery and allows running specific tests without modifying files (see escriptcore/py_src/testing.py for more info/examples)


Revision 4961 - Directory Listing
Modified Thu May 22 03:53:31 2014 UTC (3 years, 6 months ago) by sshaw
another two epydoc leftovers that were missed

Revision 4960 - Directory Listing
Modified Thu May 22 03:35:41 2014 UTC (3 years, 6 months ago) by sshaw
removing vestigal epydoc markup and replacing with sphinx markup


Revision 4943 - Directory Listing
Modified Thu May 15 04:58:35 2014 UTC (3 years, 7 months ago) by sshaw
moving abstract assemblers back into ripley since only ripley uses them (for now)

Revision 4942 - Directory Listing
Modified Thu May 15 03:42:28 2014 UTC (3 years, 7 months ago) by sshaw
each PDE now is responsible for its own assembler, allows multiple types of PDEs to share a domain without interference

Revision 4938 - Directory Listing
Modified Wed May 14 01:13:23 2014 UTC (3 years, 7 months ago) by jfenwick
Modify unit tests to read their classes from
esys.escriptcore.utestselect

Change the line in that file to switch between unittest and unittest2



Revision 4935 - Directory Listing
Modified Tue May 13 03:49:09 2014 UTC (3 years, 7 months ago) by jfenwick
Fixes for Python3


Revision 4934 - Directory Listing
Modified Tue May 13 00:28:11 2014 UTC (3 years, 7 months ago) by jfenwick
This commit is brought to you by the number 4934 and the tool "meld".
Merge of partially complete split world code from branch.




Revision 4930 - Directory Listing
Modified Mon May 12 01:56:16 2014 UTC (3 years, 7 months ago) by caltinay
a few constness fixes in abstract and pasowrap SystemMatrix.


Revision 4929 - Directory Listing
Modified Mon May 5 06:20:20 2014 UTC (3 years, 7 months ago) by caltinay
a few non-invasive const fixes in AbstractSystemMatrix.


Revision 4928 - Directory Listing
Modified Mon May 5 03:02:04 2014 UTC (3 years, 7 months ago) by caltinay
fixed a very bad doc string in abstract class.


Revision 4912 - Directory Listing
Modified Wed Apr 30 04:57:01 2014 UTC (3 years, 7 months ago) by jduplessis
update to comments and fixing of docstring


Revision 4909 - Directory Listing
Modified Wed Apr 30 01:20:22 2014 UTC (3 years, 7 months ago) by caltinay
Fixed Wunused-functions picked up by g++ 4.9


Revision 4904 - Directory Listing
Modified Tue Apr 29 04:40:30 2014 UTC (3 years, 7 months ago) by jduplessis
removing test print


Revision 4900 - Directory Listing
Modified Tue Apr 29 01:44:02 2014 UTC (3 years, 7 months ago) by jduplessis
update sympy version check


Revision 4899 - Directory Listing
Modified Tue Apr 29 01:42:23 2014 UTC (3 years, 7 months ago) by jduplessis
sympy version check


Revision 4898 - Directory Listing
Modified Tue Apr 29 01:03:58 2014 UTC (3 years, 7 months ago) by jduplessis
sympy version check


Revision 4871 - Directory Listing
Modified Wed Apr 16 05:28:27 2014 UTC (3 years, 8 months ago) by jduplessis
changed symconsts to symconsts to fit the rest of escript 


Revision 4866 - Directory Listing
Modified Fri Apr 11 03:28:35 2014 UTC (3 years, 8 months ago) by jfenwick
Remove reference to epydoc documentation from doxygen (since our debian doc package uses sphinx).


Revision 4865 - Directory Listing
Modified Fri Apr 11 02:38:11 2014 UTC (3 years, 8 months ago) by sshaw
bringing doxygen reported version number up to date

Revision 4857 - Directory Listing
Modified Wed Apr 9 06:54:59 2014 UTC (3 years, 8 months ago) by jduplessis
modified atoms code that when type is set to escript.Symbol, sympy.symbol get added to the type list. This is because escript.symbols are represented by sympy symbols in the _arr list


Revision 4855 - Directory Listing
Modified Wed Apr 9 06:19:59 2014 UTC (3 years, 8 months ago) by sshaw
removing leftover python solveroptions

Revision 4842 - Directory Listing
Modified Tue Apr 8 04:50:05 2014 UTC (3 years, 8 months ago) by jduplessis
Removing variational problem as it will not be part of the release


Revision 4841 - Directory Listing
Modified Tue Apr 8 03:49:18 2014 UTC (3 years, 8 months ago) by jfenwick
keeping older compilers happy

Revision 4837 - Directory Listing
Modified Mon Apr 7 05:59:24 2014 UTC (3 years, 8 months ago) by jduplessis
added test for evalf


Revision 4832 - Directory Listing
Modified Fri Apr 4 05:03:45 2014 UTC (3 years, 8 months ago) by sshaw
some incredibly long lines are now much, much nicer to read/wrap

Revision 4824 - Directory Listing
Modified Tue Apr 1 06:40:19 2014 UTC (3 years, 8 months ago) by sshaw
fixed sillyness with serial builds reporting as MPI

Revision 4823 - Directory Listing
Modified Tue Apr 1 05:46:07 2014 UTC (3 years, 8 months ago) by sshaw
SolverBuddy documentation changes from old python docstrings to doxygen format

Revision 4822 - Directory Listing
Modified Tue Apr 1 05:05:45 2014 UTC (3 years, 8 months ago) by sshaw
now with all required files at no extra cost

Revision 4821 - Directory Listing
Modified Tue Apr 1 04:58:33 2014 UTC (3 years, 8 months ago) by sshaw
moved SolverOptions to c++, split into SolverOptions for the options and SolverBuddy as the state as a precursor to per-pde solving... does break some use cases (e.g. pde.getSolverOptions().DIRECT will now fail, new value access is with SolverOptions.DIRECT), examples and documentation updated to match

Revision 4803 - Directory Listing
Modified Wed Mar 26 06:52:28 2014 UTC (3 years, 8 months ago) by caltinay
Removed obsolete wrappers for malloc and friends.
Paso_Pattern -> paso::Pattern


Revision 4793 - Directory Listing
Modified Fri Mar 21 06:44:26 2014 UTC (3 years, 8 months ago) by jduplessis
changed 'dict_keys' object to list so that it can be indexed

Revision 4791 - Directory Listing
Modified Fri Mar 21 03:32:56 2014 UTC (3 years, 8 months ago) by jduplessis
changed has_key to in for python 3

Revision 4788 - Directory Listing
Modified Fri Mar 21 00:11:09 2014 UTC (3 years, 8 months ago) by sshaw
fixed a broken numerical comparison

Revision 4786 - Directory Listing
Modified Thu Mar 20 23:53:44 2014 UTC (3 years, 8 months ago) by sshaw
fixed silly naming issue

Revision 4783 - Directory Listing
Modified Thu Mar 20 06:23:23 2014 UTC (3 years, 9 months ago) by sshaw
refactored linearPDE tests (removing repetition)

Revision 4781 - Directory Listing
Modified Thu Mar 20 04:57:07 2014 UTC (3 years, 9 months ago) by jduplessis
added test for preservation of data substitutions

Revision 4778 - Directory Listing
Modified Thu Mar 20 00:41:58 2014 UTC (3 years, 9 months ago) by sshaw
python3ified tests using deprecated test methods ( #89 and #106 ), added run_seismic into downunder tests (with skips if obspy/segywriters fail to write)

Revision 4768 - Directory Listing
Modified Wed Mar 19 02:51:33 2014 UTC (3 years, 9 months ago) by jduplessis
Removed commented for loops


Revision 4767 - Directory Listing
Modified Wed Mar 19 02:48:33 2014 UTC (3 years, 9 months ago) by jduplessis
Major issues with subs and data objects have been rectified. subs was also not working properly for symbol to symbol substitutions this has been rectified.


Revision 4759 - Directory Listing
Modified Mon Mar 17 07:52:26 2014 UTC (3 years, 9 months ago) by jfenwick
Throw TypeError on any attempt to use relational ops on Data, FunctionSpace and Domain.  Also fixes a type error in run_mappings.py but the test still fails.

Revision 4758 - Directory Listing
Modified Mon Mar 17 05:00:27 2014 UTC (3 years, 9 months ago) by sshaw
fixed classname typo for AcousticVelocityMapping, added exceptions for ordered comparisons with Data objects from python (#107)

Revision 4751 - Directory Listing
Modified Fri Mar 14 06:49:06 2014 UTC (3 years, 9 months ago) by sshaw
completed LameAssemblers

Revision 4743 - Directory Listing
Modified Wed Mar 12 21:09:20 2014 UTC (3 years, 9 months ago) by gross
mapping for FWI added

Revision 4742 - Directory Listing
Modified Wed Mar 12 07:21:24 2014 UTC (3 years, 9 months ago) by jduplessis
updated setitem and getitem to preserve data substitutions


Revision 4733 - Directory Listing
Modified Mon Mar 10 05:57:11 2014 UTC (3 years, 9 months ago) by jduplessis
added a check to only get data substitutions on symbols


Revision 4729 - Directory Listing
Modified Sat Mar 8 00:56:37 2014 UTC (3 years, 9 months ago) by gross
a more general for of the inversioncostfunction has required for waveform inversin

Revision 4728 - Directory Listing
Modified Fri Mar 7 05:29:06 2014 UTC (3 years, 9 months ago) by jduplessis
renamed

Revision 4727 - Directory Listing
Modified Fri Mar 7 05:28:12 2014 UTC (3 years, 9 months ago) by jduplessis
added an optional evalf input to the evaluator, without this constants such as pi etc wont get evaluated. and renamed constants symconstants


Revision 4723 - Directory Listing
Modified Wed Mar 5 05:40:25 2014 UTC (3 years, 9 months ago) by jduplessis
fixed presenservation of data objects(data substitutions) when subs is called on a symbol



Revision 4716 - Directory Listing
Modified Thu Feb 27 11:02:55 2014 UTC (3 years, 9 months ago) by jfenwick
Fixed some bad indenting.
Skip non-linear tests if sympy is not available.



Revision 4715 - Directory Listing
Modified Thu Feb 27 07:57:45 2014 UTC (3 years, 9 months ago) by jfenwick
Fixing print statement

Revision 4713 - Directory Listing
Modified Thu Feb 27 02:00:15 2014 UTC (3 years, 9 months ago) by jfenwick
Added a temporay fix to get some of the unit tests passing again.
This mechanism will be removed before the release so don't get used to it.

Revision 4708 - Directory Listing
Modified Fri Feb 21 03:08:05 2014 UTC (3 years, 9 months ago) by jduplessis
Removed rotation from ydirection test


Revision 4702 - Directory Listing
Modified Thu Feb 20 06:36:00 2014 UTC (3 years, 9 months ago) by jduplessis
updated test_yDirection fixed a couple of small bugs


Revision 4699 - Directory Listing
Modified Wed Feb 19 09:31:45 2014 UTC (3 years, 9 months ago) by jduplessis
Added test when adding incorrect Dim And Shape, for tryin to set Unknown Perameter and a test to make sure the definition of y is correct




Revision 4694 - Directory Listing
Modified Wed Feb 19 06:25:55 2014 UTC (3 years, 9 months ago) by jduplessis
fixed __getitem__ such that the symbol it return will have the same dimentionality as its parent symbol


Revision 4691 - Directory Listing
Modified Wed Feb 19 05:23:17 2014 UTC (3 years, 9 months ago) by sshaw
added support for HTI waves to the fast wave assembler

Revision 4687 - Directory Listing
Modified Wed Feb 19 00:03:29 2014 UTC (3 years, 9 months ago) by jfenwick
Remove randomFill python method from ripley domains.
All random data objects (for all domain types) should be generated 
using esys.escript.RandomData()

The only filtered random we have is gaussian on ripley but
it is triggered by passing the tuple as the last arg of RandomData().

While the interface is a bit more complicated (in that you always need
 to pass in shape and functionspace) it does mean we have a 
common interface for all domains. 

Removed randomFill from DataExpanded.
The reasoning behind this is to force domains to call the util function
themselves and enforce whatever consistancy requirements they have.

Added version of blocktools to deal with 2D case in Ripley.
Use blocktools for the 2D transfers [This was cleaner than modifying the
previous implementation to deal with variable shaped points].

Note that under MPI, ripley can not generate random data (even unfiltered)
if any of its per rank dimensions is <4 elements on any side.

Unit tests for these calls are in but some extra checks still needed.




Revision 4686 - Directory Listing
Modified Tue Feb 18 06:04:13 2014 UTC (3 years, 10 months ago) by jduplessis
modified nonlinearPDE to be compatible with python 3.


Revision 4685 - Directory Listing
Modified Tue Feb 18 04:19:27 2014 UTC (3 years, 10 months ago) by jduplessis
Replaced python dictionary iteritems with item for python 3.0 compatibility


Revision 4676 - Directory Listing
Modified Mon Feb 17 02:41:15 2014 UTC (3 years, 10 months ago) by jduplessis
Unit test for nonlinear pde. 
test that it can generate a solution without error and that the appropriate coefficients are generated when setValue is called. 



Revision 4666 - Directory Listing
Modified Mon Feb 10 03:33:51 2014 UTC (3 years, 10 months ago) by jduplessis
check in util no longer necassary due to wrappings in contants.py


Revision 4663 - Directory Listing
Modified Mon Feb 10 00:48:49 2014 UTC (3 years, 10 months ago) by jduplessis
Adding wrapper for Symbolic constants such as pi
usage:
	symconsts.pi  ---> gives escript Symbol(sympy.pi)



Revision 4662 - Directory Listing
Modified Sun Feb 9 23:03:45 2014 UTC (3 years, 10 months ago) by caltinay
Cater for changed interface in sympy 0.7.2.
Also silenced a harmless warning.


Revision 4659 - Directory Listing
Modified Fri Feb 7 00:13:47 2014 UTC (3 years, 10 months ago) by jduplessis
New solution to cos(sympy.pi). This solution help to keep sympy optional in escript and provides the desired functionality.


Revision 4657 - Directory Listing
Modified Thu Feb 6 06:12:20 2014 UTC (3 years, 10 months ago) by jfenwick
I changed some files.
Updated copyright notices, added GeoComp.




Revision 4655 - Directory Listing
Modified Thu Feb 6 04:15:42 2014 UTC (3 years, 10 months ago) by jfenwick
Reverting r4654

Revision 4654 - Directory Listing
Modified Wed Feb 5 06:55:35 2014 UTC (3 years, 10 months ago) by jduplessis
Modified some of the util function so that they will operate with general sympy objects such as pi.

This is usefull when you want to do 

sin(pi) or cos(pi) for example 

where pi is a sympy object.



Revision 4647 - Directory Listing
Modified Mon Feb 3 03:29:43 2014 UTC (3 years, 10 months ago) by jduplessis
Commiting to make sure line 309 doesn't contain print len(u_syms)\n


Revision 4641 - Directory Listing
Modified Fri Jan 31 02:13:47 2014 UTC (3 years, 10 months ago) by jduplessis
line 966 

	"if not args.has_key(n): args[n]=Data()" was changed to "if not args.has_key(n) and not constants.has_key(n): args[n]=Data()".

also added: 

	args=dict(args.items()+constants.items())

to merge the two dictionaries.



Revision 4634 - Directory Listing
Modified Tue Jan 28 03:33:03 2014 UTC (3 years, 10 months ago) by jfenwick
Fixes to keep clang happy

Revision 4629 - Directory Listing
Modified Fri Jan 24 03:29:25 2014 UTC (3 years, 10 months ago) by sshaw
added dirac point interpolation to ripley (and fixed dirac points in Brick)
added fast wave assembler for Brick and minor correction to fast wave assembler for Rectangle


Revision 4628 - Directory Listing
Modified Fri Jan 24 02:09:19 2014 UTC (3 years, 10 months ago) by jduplessis
Modifying nonlinearPDE.py comments to make the meaning clearer


Revision 4627 - Directory Listing
Modified Fri Jan 24 01:53:33 2014 UTC (3 years, 10 months ago) by jduplessis
fixing error in comment


Revision 4625 - Directory Listing
Modified Mon Jan 20 03:42:55 2014 UTC (3 years, 10 months ago) by sshaw
amalgamated waveassembler constant construction into the one place

Revision 4622 - Directory Listing
Modified Fri Jan 17 04:55:41 2014 UTC (3 years, 11 months ago) by sshaw
Added dirac support to ripley, added interface for custom assemblers for ripleydomains (also added the custom assembler for 2D VTI waves), changed synthetic_VTI example to use the new, faster custom assembler


Revision 4621 - Directory Listing
Modified Thu Jan 16 10:07:44 2014 UTC (3 years, 11 months ago) by jfenwick
getSampleDataRO is now const

Revision 4607 - Directory Listing
Modified Wed Dec 18 09:46:16 2013 UTC (4 years ago) by jfenwick
include cmath in all cases rather than math.h - the mathinf for intel on windows is still there (in part because we have no way to test if it is still relevant)

Revision 4603 - Directory Listing
Modified Wed Dec 18 02:24:32 2013 UTC (4 years ago) by jfenwick
Added boost::noncopyable to remaining abstract base classes in the module file.
ie escriptcpp.cpp
Note I have not altered the c++ inheritance (this just just for the boost::python import)


Revision 4601 - Directory Listing
Modified Tue Dec 17 23:37:08 2013 UTC (4 years ago) by gross
downunder: self-demagnetization added as forward model. 



Revision 4599 - Directory Listing
Modified Sun Dec 15 23:51:13 2013 UTC (4 years ago) by sshaw
merged 3.4.1 release changes into trunk

Revision 4576 - Directory Listing
Modified Mon Dec 9 23:35:30 2013 UTC (4 years ago) by sshaw
python3ified things, replaced mixed whitespace and xrange calls

Revision 4571 - Directory Listing
Modified Fri Dec 6 02:47:14 2013 UTC (4 years ago) by sshaw
replaced a deliberate NULL dereference with abort() to satisfy lion-clang

Revision 4547 - Directory Listing
Modified Thu Nov 28 23:47:27 2013 UTC (4 years ago) by jfenwick
Added msec unit


Revision 4543 - Directory Listing
Modified Thu Nov 28 03:42:10 2013 UTC (4 years ago) by gross
missing retirn statement added

Revision 4542 - Directory Listing
Modified Thu Nov 28 01:33:22 2013 UTC (4 years ago) by jfenwick
Moving to new icc and associated modules.




Revision 4536 - Directory Listing
Modified Thu Nov 21 07:58:32 2013 UTC (4 years ago) by jfenwick
Working around intelcc s seeming dislike of boost smart pointers

Revision 4531 - Directory Listing
Modified Mon Nov 4 02:09:05 2013 UTC (4 years, 1 month ago) by jfenwick
Removed strange looking dead code to resolve issue #710

Revision 4528 - Directory Listing
Modified Sun Sep 29 23:12:19 2013 UTC (4 years, 2 months ago) by caltinay
Added timeStepFormat option to saveESD (mantis 723).


Revision 4521 - Directory Listing
Modified Mon Aug 26 11:51:30 2013 UTC (4 years, 3 months ago) by jfenwick
Remove bool_t
Part of random.



Revision 4513 - Directory Listing
Modified Mon Aug 5 00:57:34 2013 UTC (4 years, 4 months ago) by jfenwick
Dropping VSL random. Random data now uses more general routine.

Revision 4510 - Directory Listing
Modified Thu Jul 25 04:02:07 2013 UTC (4 years, 4 months ago) by caltinay
Fixed a path which should fix unit tests.


Revision 4509 - Directory Listing
Modified Wed Jul 24 08:37:29 2013 UTC (4 years, 4 months ago) by jfenwick
Fixed paths for utest.sh


Revision 4508 - Directory Listing
Modified Wed Jul 24 04:23:22 2013 UTC (4 years, 4 months ago) by jfenwick
Moving to escriptcore

Revision 4507 - Directory Listing
Modified Wed Jul 24 02:50:22 2013 UTC (4 years, 4 months ago) by jfenwick
Copied from: trunk/escript revision 4506
It begins

Revision 4504 - Directory Listing
Modified Mon Jul 22 02:04:34 2013 UTC (4 years, 4 months ago) by caltinay
Original Path: trunk/escript
Fix to verbose parameter reporting in linear pdes


Revision 4481 - Directory Listing
Modified Mon Jun 24 06:22:27 2013 UTC (4 years, 5 months ago) by caltinay
Original Path: trunk/escript
Hmm. That's a nasty undocumented "feature"...


Revision 4480 - Directory Listing
Modified Mon Jun 24 05:09:52 2013 UTC (4 years, 5 months ago) by caltinay
Original Path: trunk/escript
More valgrind suppressions and memory leak fixes identified in various places.


Revision 4478 - Directory Listing
Modified Thu Jun 20 06:34:02 2013 UTC (4 years, 5 months ago) by caltinay
Original Path: trunk/escript
Moved appendRankToFilename to header within namespace to remove code duplication
and fixed memory leaks this way.


Revision 4477 - Directory Listing
Modified Thu Jun 20 02:41:28 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/escript
escript: use scoped_array instead of scoped_ptr
ripley: netcdf returns a copy of an array so use scoped_array
downunder: s/Sperical/Spherical/
scripts: added a few more suppressions


Revision 4474 - Directory Listing
Modified Wed Jun 19 06:44:47 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/escript
Brought over leak fix, gcc 4.8 fix and mismatched new[]/delete fix from release
branch.


Revision 4454 - Directory Listing
Modified Thu Jun 13 03:12:17 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/escript
More "delete test output files after checking"


Revision 4448 - Directory Listing
Modified Wed Jun 12 23:05:12 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/escript
Only one rank should delete file in tests.


Revision 4447 - Directory Listing
Modified Wed Jun 12 13:55:53 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/escript
Clean up some generated test files.


Revision 4446 - Directory Listing
Modified Tue Jun 11 04:00:15 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/escript
This should fix the py3 error...


Revision 4441 - Directory Listing
Modified Fri Jun 7 02:23:49 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/escript
finley now uses Data objects directly instead of going through the C wrapper.


Revision 4421 - Directory Listing
Modified Tue May 21 05:16:39 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/escript
Finley... there were actually some long-standing errors in the checks.


Revision 4407 - Directory Listing
Modified Tue May 14 05:17:24 2013 UTC (4 years, 7 months ago) by jfenwick
Original Path: trunk/escript
Added output function to arithmetic tuple

Revision 4399 - Directory Listing
Modified Thu May 9 10:46:41 2013 UTC (4 years, 7 months ago) by jfenwick
Original Path: trunk/escript
just fiddling

Revision 4398 - Directory Listing
Modified Thu May 9 08:42:44 2013 UTC (4 years, 7 months ago) by jfenwick
Original Path: trunk/escript
support for supressing doco subpackages. fiddling with one of the imports to try to reduce the number of places where Data appears.  Seriously it looks like we have 8 different Data classes

Revision 4396 - Directory Listing
Modified Wed May 8 09:27:10 2013 UTC (4 years, 7 months ago) by jfenwick
Original Path: trunk/escript
fix extraction script to pick up more classes. Stop models from importing escript into its namespace

Revision 4380 - Directory Listing
Modified Wed Apr 24 23:59:49 2013 UTC (4 years, 7 months ago) by jfenwick
Original Path: trunk/escript
Attempt to help windows

Revision 4369 - Directory Listing
Modified Fri Apr 19 02:32:34 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/escript
fix problems revealed on freebsd

Revision 4346 - Directory Listing
Modified Tue Apr 2 04:46:45 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/escript
Bringing the changes from doubleplusgood branch.
Can't merge directly because svn doesn't transfer changes to renamed files (mutter grumble).

Revision 4326 - Directory Listing
Modified Wed Mar 20 02:50:46 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/escript
Removed stray print statement.


Revision 4323 - Directory Listing
Modified Tue Mar 19 00:17:36 2013 UTC (4 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Bringing across changes from release3.3.1. (Version names are set back to Development).

Revision 4286 - Directory Listing
Modified Thu Mar 7 04:28:11 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/escript
Assorted spelling fixes.


Revision 4285 - Directory Listing
Modified Thu Mar 7 01:08:43 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/escript
Corrected some spelling.


Revision 4281 - Directory Listing
Modified Wed Mar 6 07:08:36 2013 UTC (4 years, 9 months ago) by gross
Original Path: trunk/escript
typo - sorry

Revision 4264 - Directory Listing
Modified Thu Feb 28 11:32:57 2013 UTC (4 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Trying

Revision 4255 - Directory Listing
Modified Wed Feb 27 03:06:21 2013 UTC (4 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Hopefully, this will address the interpolation problems.

New canInterpolate() function exposed to python which calls probeInterpolation

AbstractDomain now has an additional virtual.
preferredIntrpolationOnDomain()

This will return 0 if interpolation is impossible, 1 if possible and preferred.
It will return -1 if interpolation is possible and preferred in the 
oposite direction.

A value of -1 does not say that the proposed interpolation is possible or not.
Rather it indicates "please use the other way".
If you really _need_ to test it that way, use probeInterpolationOnDomain 



Revision 4242 - Directory Listing
Modified Mon Feb 25 03:16:14 2013 UTC (4 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Allow pure virtual classes to be exported to python.
Temporary fix for a ripley interpolation issue


Revision 4237 - Directory Listing
Modified Thu Feb 21 07:27:36 2013 UTC (4 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Fixed bad tabbing so this revision works with python3 or clang.
(clang at least up to the tests which need pyproj)


Revision 4232 - Directory Listing
Modified Wed Feb 20 08:31:31 2013 UTC (4 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Fixed the WrappedArray class so it doesn't generate warnings


Revision 4226 - Directory Listing
Modified Wed Feb 20 03:07:36 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/escript
typo.


Revision 4223 - Directory Listing
Modified Wed Feb 20 01:47:26 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/escript
$#@%%^@(!


Revision 4221 - Directory Listing
Modified Wed Feb 20 01:24:29 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/escript
The numpy 1.7 macro does not help since the new style API/macros are not
present in 1.6. So when compiling with numpy 1.7 werror needs to be set to
False.


Revision 4219 - Directory Listing
Modified Wed Feb 20 00:26:19 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/escript
Not sure why, but this fixes all failures in the linearPDE tests with ripley.


Revision 4217 - Directory Listing
Modified Tue Feb 19 06:09:51 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/escript
numpy 1.7 introduced a warning for deprecation of certain APIs. We have to
acknowledge that to get rid of the warning...


Revision 4190 - Directory Listing
Modified Mon Feb 11 05:10:00 2013 UTC (4 years, 10 months ago) by gross
Original Path: trunk/escript
unit gal added

Revision 4154 - Directory Listing
Modified Tue Jan 22 09:30:23 2013 UTC (4 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Round 1 of copyright fixes

Revision 4126 - Directory Listing
Modified Tue Jan 8 02:37:48 2013 UTC (4 years, 11 months ago) by gross
Original Path: trunk/escript
some work on the level set class. no testing yet.

Revision 4114 - Directory Listing
Modified Fri Dec 14 04:24:46 2012 UTC (5 years ago) by caltinay
Original Path: trunk/escript
Time to remove deprecated saveVTK/DX methods from Data and Domain.


Revision 4104 - Directory Listing
Modified Thu Dec 13 03:30:23 2012 UTC (5 years ago) by jfenwick
Original Path: trunk/escript
Ensuring we are using new-style classes
This may not be strictly necessary since our code does not depend on the difference.


Revision 4085 - Directory Listing
Modified Tue Nov 20 07:04:11 2012 UTC (5 years ago) by jfenwick
Original Path: trunk/escript
nonuniformInterolate and Slope added.
Doco later


Revision 4084 - Directory Listing
Modified Tue Nov 20 06:22:07 2012 UTC (5 years ago) by jfenwick
Original Path: trunk/escript
Adding some linebreaks

Revision 4078 - Directory Listing
Modified Fri Nov 16 07:50:49 2012 UTC (5 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Unit tests for binary install with no scons and no source tree.
Script for installing and testing a .deb within a chroot.




Revision 4074 - Directory Listing
Modified Thu Nov 15 03:30:59 2012 UTC (5 years, 1 month ago) by gross
Original Path: trunk/escript
this will break the downundermodule: major revision of the classes.

Revision 4071 - Directory Listing
Modified Tue Nov 13 21:43:11 2012 UTC (5 years, 1 month ago) by gross
Original Path: trunk/escript
small fix

Revision 4069 - Directory Listing
Modified Tue Nov 13 07:47:16 2012 UTC (5 years, 1 month ago) by gross
Original Path: trunk/escript
ArithmeticTuple supports empty data object as components now.

Revision 4046 - Directory Listing
Modified Tue Oct 30 04:43:25 2012 UTC (5 years, 1 month ago) by caltinay
Original Path: trunk/escript
Deprecated saveDX and made sure DeprecationWarnings are shown (py2.7 disabled
those). Also a fix to $BUILD_DIR being non-absolute.


Revision 4039 - Directory Listing
Modified Fri Oct 26 07:34:06 2012 UTC (5 years, 1 month ago) by gross
Original Path: trunk/escript
magnetic inversion added

Revision 4035 - Directory Listing
Modified Thu Oct 25 03:10:14 2012 UTC (5 years, 1 month ago) by caltinay
Original Path: trunk/escript
Tweaked scons files so tests work even when specifying non-absolute build_dir.


Revision 4026 - Directory Listing
Modified Tue Oct 23 03:12:50 2012 UTC (5 years, 1 month ago) by gross
Original Path: trunk/escript
missing file

Revision 4025 - Directory Listing
Modified Mon Oct 22 08:18:47 2012 UTC (5 years, 1 month ago) by gross
Original Path: trunk/escript
 linearPDE.resetRightHandSideCoefficients has been implemented and tested.

Revision 4023 - Directory Listing
Modified Tue Oct 16 04:17:48 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Another fix to the PDE assembly logic in ripley.


Revision 4020 - Directory Listing
Modified Thu Oct 11 22:27:33 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Removed print() that slipped in in last commit.


Revision 4019 - Directory Listing
Modified Thu Oct 11 08:12:55 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/escript
More tabbing errors,
range/xrange
...

Revision 4018 - Directory Listing
Modified Thu Oct 11 04:43:39 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Used "new" raise syntax in a few places
Fixed some tabbing
Fixed some funnies involving changes to xrange/range
added a quick and nasty __hash__ function to Symbol
   def __hash__(self):
        return id(self)
This does mean that __hash__ and == do not match exactly.   Not sure if that matters for our purposes

Revision 4017 - Directory Listing
Modified Thu Oct 11 03:13:28 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Modified a test so roundoff errors don't cause failures.


Revision 4014 - Directory Listing
Modified Thu Oct 4 03:28:35 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Changed data source to use ripley's netCDF reader,
added tests and changed ERMapper test to have different x and y sizes.


Revision 4009 - Directory Listing
Modified Tue Oct 2 05:53:37 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
don't try to flip y-coord in reader. some more fixes and doco.


Revision 4007 - Directory Listing
Modified Tue Oct 2 02:12:01 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Doco updates.
Data source paddings now take x,y not xy,z as Z padding can be done by setting
vertical extents.


Revision 4005 - Directory Listing
Modified Fri Sep 28 06:09:03 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
test fixes, doco updates, annoyance removals.


Revision 4003 - Directory Listing
Modified Fri Sep 28 00:20:01 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Load balancing on unit tests

Revision 4000 - Directory Listing
Modified Thu Sep 27 01:32:07 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
s/escript/escore/


Revision 3997 - Directory Listing
Modified Thu Sep 27 01:09:12 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Add note to documentation that saveDataCSV will not work in all cases.


Revision 3996 - Directory Listing
Modified Thu Sep 27 00:54:10 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Don't test saveCSV for cases it does not work with.


Revision 3995 - Directory Listing
Modified Wed Sep 26 12:43:17 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/escript
More module fiddles

Revision 3994 - Directory Listing
Modified Wed Sep 26 07:38:38 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Install doco still needs work.
Removing some of the weird:
     esys.finley.finley
type modules

Revision 3993 - Directory Listing
Modified Wed Sep 26 07:00:55 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Addressing mantis 651. Test for finley will fail under MPI since there is
sth wrong with the way ReducedContinuousFunction samples are interrogated.


Revision 3992 - Directory Listing
Modified Wed Sep 26 02:50:48 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Data.cpp: Removed some namespace ambiguities which fixes doxygen warnings, some
cleanup and reindent.
*: doxygen fixes.


Revision 3991 - Directory Listing
Modified Tue Sep 25 23:52:22 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Updated doxygen cfg file and made a few first changes to doco.


Revision 3990 - Directory Listing
Modified Tue Sep 25 05:03:20 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
First set of assorted epydoc fixes/additions.


Revision 3982 - Directory Listing
Modified Fri Sep 21 03:23:22 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/escript
More edits + removing pyvisi from trunk


Revision 3981 - Directory Listing
Modified Fri Sep 21 02:47:54 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/escript
First pass of updating copyright notices

Revision 3979 - Directory Listing
Modified Thu Sep 20 06:18:49 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Fixed tests under MPI.


Revision 3978 - Directory Listing
Modified Thu Sep 20 04:36:17 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Make sympy optional as it was intended initially. Trying to instantiate anything
from symbolic will raise an exception if sympy is not available.


Revision 3976 - Directory Listing
Modified Thu Sep 20 03:26:47 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
fixed python-2.7'ism.


Revision 3975 - Directory Listing
Modified Thu Sep 20 01:54:06 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/escript
Merged symbolic branch into trunk. Curious what daniel and spartacus have to
say...


Revision 3962 - Directory Listing
Modified Tue Sep 11 09:12:07 2012 UTC (5 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Fix in brick for ambiguous typing.

Python work around for unit tests.
Passing cpp tests as well.

omp is disabled due to a weird linking error.


Revision 3961 - Directory Listing
Modified Tue Sep 11 07:21:41 2012 UTC (5 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Options file for mole.
Work around for python compile errors


Revision 3940 - Directory Listing
Modified Thu Jul 26 05:54:58 2012 UTC (5 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Disabling tests which do not allow MPI
Previously we allowed these if there was only one rank


Revision 3931 - Directory Listing
Modified Tue Jul 10 00:39:09 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Fixing spelling


Revision 3928 - Directory Listing
Modified Mon Jul 9 23:23:43 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Do not allow attempts to setValue using a Locator which does not match the funcionSpace of the Data


Revision 3927 - Directory Listing
Modified Mon Jul 9 11:11:47 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Avoid warning


Revision 3923 - Directory Listing
Modified Mon Jul 9 05:12:12 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Fixing build error.


Revision 3922 - Directory Listing
Modified Mon Jul 9 02:19:51 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Adds setvalue to locator
Addresses mantis #531


Revision 3919 - Directory Listing
Modified Thu Jul 5 03:12:02 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Don't know what caused this to show as an error.
Compiler update perhaps?




Revision 3918 - Directory Listing
Modified Thu Jul 5 02:44:07 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Added unit test which uses the TestDomain to check reduction.
TestDomains can no longer be created directly from python 
(fixes problem I had earlier)

TestDomain can now create testdomains with aribtrarily sized 
coordinate vectors.


Revision 3917 - Directory Listing
Modified Thu Jul 5 00:17:50 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Fixing a bug in lazy reduction operations.
Will add extra test to prevent regression once I can find out why the test is crashing


Revision 3916 - Directory Listing
Modified Wed Jul 4 06:16:52 2012 UTC (5 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Deal correctly with scalars passed into inplace update operators.
Fixes mantis 669

Revision 3911 - Directory Listing
Modified Thu Jun 14 01:01:03 2012 UTC (5 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Copyright changes

Revision 3910 - Directory Listing
Modified Thu Jun 14 00:45:03 2012 UTC (5 years, 6 months ago) by gross
Original Path: trunk/escript
Small bug fixed.

Revision 3909 - Directory Listing
Modified Wed Jun 13 07:03:06 2012 UTC (5 years, 6 months ago) by gross
Original Path: trunk/escript
darcy solver removes hydrostatic pressure from problem now

Revision 3906 - Directory Listing
Modified Thu Jun 7 11:00:50 2012 UTC (5 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Disable AMG on MPI builds


Revision 3905 - Directory Listing
Modified Tue Jun 5 08:33:41 2012 UTC (5 years, 6 months ago) by gross
Original Path: trunk/escript
length scale changed

Revision 3892 - Directory Listing
Modified Tue Apr 10 08:57:23 2012 UTC (5 years, 8 months ago) by jfenwick
Original Path: trunk/escript
Merged changes across from the attempt2 branch.
This version builds and passes python2 tests.
It also passes most python3 tests.




Revision 3885 - Directory Listing
Modified Wed Apr 4 22:12:26 2012 UTC (5 years, 8 months ago) by gross
Original Path: trunk/escript
some fix in AMG

Revision 3883 - Directory Listing
Modified Mon Mar 26 03:24:14 2012 UTC (5 years, 8 months ago) by caltinay
Original Path: trunk/escript
Modified dlopenflags in escript's init module so newer MKL libraries can
successfully load support libraries.


Revision 3882 - Directory Listing
Modified Thu Mar 22 02:15:57 2012 UTC (5 years, 8 months ago) by caltinay
Original Path: trunk/escript
Added another constraint for the numpy optimized array access: endianness.
The scipy netcdf reader gave me big endian data which resulted in garbage.
Can use the astype() method in python to convert.


Revision 3852 - Directory Listing
Modified Thu Mar 1 05:34:52 2012 UTC (5 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Correcting some indent errors


Revision 3837 - Directory Listing
Modified Thu Feb 16 03:58:58 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/escript
Test cleanup.


Revision 3822 - Directory Listing
Modified Mon Feb 13 06:22:06 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/escript
Transport solver supports now constraints (except the linear CN)

Revision 3816 - Directory Listing
Modified Thu Feb 9 05:46:36 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/escript
WrappedArray now honours the 'strides' field in the numpy array interface
and supports more data types. Fixes test failures on savanna which for some
reason did not surface on other machines.


Revision 3807 - Directory Listing
Modified Mon Feb 6 06:14:25 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/escript
LINEAR_CRANK_NICOLSON solver added

Revision 3799 - Directory Listing
Modified Thu Feb 2 10:41:28 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/escript
test for gradient of constant data added

Revision 3798 - Directory Listing
Modified Thu Feb 2 09:47:27 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/escript
test for interpolation of constant data added

Revision 3797 - Directory Listing
Modified Thu Feb 2 09:28:59 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/escript
test for integration of constant data added.

Revision 3793 - Directory Listing
Modified Wed Feb 1 07:39:43 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/escript
new implementation of FCT solver with some modifications to the python interface

Revision 3792 - Directory Listing
Modified Wed Feb 1 06:16:25 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/escript
Merged ripley rectangular domain into trunk.


Revision 3788 - Directory Listing
Modified Mon Jan 30 04:41:33 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/escript
Fixed showEscriptParams() which hasn't worked for 2 years or so.


Revision 3787 - Directory Listing
Modified Fri Jan 27 01:43:47 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/escript
Changed test cases from y.interpolateTable(...x...) to x.interpolateTable(...y...)


Revision 3786 - Directory Listing
Modified Wed Jan 25 04:46:39 2012 UTC (5 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Made 2D interpolation call consistant with 1D and 3D.
Doco updates later


Revision 3784 - Directory Listing
Modified Wed Jan 25 01:31:42 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/escript
Implemented optimized copy from numpy in WrappedArray (#652).


Revision 3771 - Directory Listing
Modified Wed Jan 18 02:30:48 2012 UTC (5 years, 11 months ago) by jfenwick
Original Path: trunk/escript
First stage of 2.6/3 conversion


Revision 3738 - Directory Listing
Modified Tue Dec 13 00:37:55 2011 UTC (6 years ago) by caltinay
Original Path: trunk/escript
Windoze: Fixed warning and linker error
Don't look for non-existing pasowrap tests.


Revision 3737 - Directory Listing
Modified Tue Dec 13 00:04:39 2011 UTC (6 years ago) by caltinay
Original Path: trunk/escript
Reordered and removed superfluous libraries from link lines. Hope W32 likes
that.


Revision 3723 - Directory Listing
Modified Wed Dec 7 05:59:04 2011 UTC (6 years ago) by caltinay
Original Path: trunk/escript
Don't eat exceptions when using MPI with one rank.


Revision 3720 - Directory Listing
Modified Wed Dec 7 04:32:21 2011 UTC (6 years ago) by caltinay
Original Path: trunk/escript
Fixed off-by-one error in FunctionSpace


Revision 3678 - Directory Listing
Modified Thu Nov 17 06:32:05 2011 UTC (6 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Reversing other changes which made it in somehow


Revision 3676 - Directory Listing
Modified Thu Nov 17 03:52:25 2011 UTC (6 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Removed some debug text
Corrected some dudley where they should not have been.
Set savanna to build shared for now


Revision 3675 - Directory Listing
Modified Thu Nov 17 00:53:38 2011 UTC (6 years, 1 month ago) by jfenwick
Original Path: trunk/escript
pasowrap joins the trunk.


Revision 3648 - Directory Listing
Modified Thu Nov 3 08:13:31 2011 UTC (6 years, 1 month ago) by gross
Original Path: trunk/escript
typos fixed

Revision 3630 - Directory Listing
Modified Wed Oct 19 03:04:53 2011 UTC (6 years, 2 months ago) by gross
Original Path: trunk/escript
minor fix to dary flux

Revision 3628 - Directory Listing
Modified Wed Oct 19 02:09:36 2011 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/escript
Prepend our libraries instead of appending. This should fix HYPRE link
issue on epic.


Revision 3620 - Directory Listing
Modified Wed Oct 5 06:06:14 2011 UTC (6 years, 2 months ago) by gross
Original Path: trunk/escript
bug fixed

Revision 3619 - Directory Listing
Modified Wed Oct 5 03:53:34 2011 UTC (6 years, 2 months ago) by gross
Original Path: trunk/escript
some rescaling of permeability in the darcy solver added

Revision 3603 - Directory Listing
Modified Mon Sep 19 03:42:53 2011 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/escript
Fixed some unused var errors in non-mpi build.


Revision 3597 - Directory Listing
Modified Thu Sep 15 06:03:17 2011 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/escript
Switching to external cppunit:
-removed tools/CppUnitTest
-updated scons script and files
-updated tests to changed API
-updated readme

Bumped scons options file version to 201. Additions:
-cppunit*
-boomeramg*
-vsl_random



Revision 3585 - Directory Listing
Modified Wed Sep 7 06:16:08 2011 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/escript
Fix for #582: Determine if gmsh was compiled with MPI support and use
MPI_Comm_spawn to invoke it if necessary.


Revision 3584 - Directory Listing
Modified Tue Sep 6 11:08:34 2011 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Removing Locator.setValue for now


Revision 3582 - Directory Listing
Modified Tue Sep 6 02:02:17 2011 UTC (6 years, 3 months ago) by gross
Original Path: trunk/escript
some clarification of the documentation on the Stokes solver.

Revision 3579 - Directory Listing
Modified Mon Sep 5 23:25:01 2011 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Stopping unit test from failing until I can get it working


Revision 3578 - Directory Listing
Modified Mon Sep 5 23:18:45 2011 UTC (6 years, 3 months ago) by gross
Original Path: trunk/escript
Missing dependence added (?) and typo in test files fixed.

Revision 3577 - Directory Listing
Modified Mon Sep 5 08:22:52 2011 UTC (6 years, 3 months ago) by gross
Original Path: trunk/escript
getFLux fixed and tests added.


Revision 3575 - Directory Listing
Modified Fri Sep 2 08:31:08 2011 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Fixing bug I introduced with the last commit


Revision 3574 - Directory Listing
Modified Fri Sep 2 07:19:31 2011 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Added setValue to locator.
Some unit tests added but they aren't being triggered for some reason


Revision 3573 - Directory Listing
Modified Fri Sep 2 05:51:02 2011 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Added more comprehensible doco about 3D interpolation.
Also fixed a bug but this may break code which previously used 3D interpolation.

This fixes mantis #581


Revision 3569 - Directory Listing
Modified Thu Sep 1 02:42:36 2011 UTC (6 years, 3 months ago) by gross
Original Path: trunk/escript
Darcy flow solver and docu reviewed. Coupled solvers have been removed.


Revision 3566 - Directory Listing
Modified Tue Aug 30 07:37:55 2011 UTC (6 years, 3 months ago) by gross
Original Path: trunk/escript
small fix to units

Revision 3565 - Directory Listing
Modified Mon Aug 29 10:28:57 2011 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/escript
surely it will accept this one


Revision 3564 - Directory Listing
Modified Mon Aug 29 09:09:30 2011 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/escript
In case windows is case sensitive


Revision 3552 - Directory Listing
Modified Mon Aug 22 00:05:17 2011 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Fixed icc problem


Revision 3551 - Directory Listing
Modified Fri Aug 19 03:53:41 2011 UTC (6 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Changing unit test calls to use non deprecated forms (python2.7)
fixes bug #568


Revision 3550 - Directory Listing
Modified Fri Aug 19 01:51:35 2011 UTC (6 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Switching from rand() to boost::random for non-VSL randoms


Revision 3549 - Directory Listing
Modified Tue Aug 9 06:40:06 2011 UTC (6 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Fix for issue #617
A couple of extra tests to make sure it doesn't happen again


Revision 3544 - Directory Listing
Modified Wed Jul 27 06:19:10 2011 UTC (6 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Temporary fix to get windows to compile


Revision 3522 - Directory Listing
Modified Tue May 24 00:57:58 2011 UTC (6 years, 6 months ago) by gross
Original Path: trunk/escript
(almost) full support for Point elements

Revision 3515 - Directory Listing
Modified Thu May 19 08:20:57 2011 UTC (6 years, 7 months ago) by gross
Original Path: trunk/escript
some first work for DiracFunctions

Revision 3514 - Directory Listing
Modified Thu May 19 04:48:34 2011 UTC (6 years, 7 months ago) by caltinay
Original Path: trunk/escript
Fixed __truediv__ and added __rtruediv__ for new python division operator.


Revision 3510 - Directory Listing
Modified Fri May 13 06:09:49 2011 UTC (6 years, 7 months ago) by gross
Original Path: trunk/escript
some fixes for the compilation without BOOMERAMG

Revision 3508 - Directory Listing
Modified Fri May 13 04:15:29 2011 UTC (6 years, 7 months ago) by lgao
Original Path: trunk/escript
Add Boomer AMG as a new preconditioner 
Can be used by .setPreconditioner(SolverOptions.BOOMERAMG)
and the following parallel coarsening method can be 
used together with Boomer AMG preconditioner: 
  .setCoarsening(SolverOptions.CIJP_FIXED_RANDOM_COARSENING)
  .setCoarsening(SolverOptions.CIJP_COARSENING)
  .setCoarsening(SolverOptions.FALGOUT_COARSENING)
  .setCoarsening(SolverOptions.PMIS_COARSENING)
  .setCoarsening(SolverOptions.HMIS_COARSENING)

Note that Boomer AMG is only available when MPI is enabled.  



Revision 3506 - Directory Listing
Modified Wed May 11 01:59:45 2011 UTC (6 years, 7 months ago) by jfenwick
Original Path: trunk/escript
Use VSL if MKLRANDOM is defined.
Use different seeds for different ranks/threads.
Use different seeds for successive calls with no seed given.


Revision 3505 - Directory Listing
Modified Fri Apr 29 07:09:45 2011 UTC (6 years, 7 months ago) by jfenwick
Original Path: trunk/escript
arithmetic operations now return NotImplemented if they don't know what to do.
Fixes mantis issue #54


Revision 3504 - Directory Listing
Modified Thu Apr 28 12:55:05 2011 UTC (6 years, 7 months ago) by jfenwick
Original Path: trunk/escript
Move arithmetic ops into explicitly named methods

Revision 3502 - Directory Listing
Modified Thu Apr 28 05:06:24 2011 UTC (6 years, 7 months ago) by gross
Original Path: trunk/escript
Darcy flow solver is now supporting 4 solvers

Revision 3501 - Directory Listing
Modified Wed Apr 13 04:07:53 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/escript


Revision 3500 - Directory Listing
Modified Mon Apr 11 03:09:06 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/escript
GMRES solver for new DarcyFlux solver added

Revision 3499 - Directory Listing
Modified Fri Apr 8 00:14:35 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/escript


Revision 3494 - Directory Listing
Modified Tue Apr 5 04:12:08 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/escript
more coal seam gas

Revision 3490 - Directory Listing
Modified Wed Mar 30 02:24:33 2011 UTC (6 years, 8 months ago) by caltinay
Original Path: trunk/escript
More gcc-4.6 fixes (mostly initialized-but-unused-var warnings)


Revision 3486 - Directory Listing
Modified Sun Mar 27 22:27:45 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/escript
bug in eigenvector calculation fixed (see mantis=594)

Revision 3485 - Directory Listing
Modified Thu Mar 24 22:44:40 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/escript
some compile fixes

Revision 3475 - Directory Listing
Modified Thu Mar 17 00:28:08 2011 UTC (6 years, 9 months ago) by caltinay
Original Path: trunk/escript
Removed an obsolete file.


Revision 3470 - Directory Listing
Modified Mon Mar 14 03:50:49 2011 UTC (6 years, 9 months ago) by caltinay
Original Path: trunk/escript
Fix for mantis issue 591 (added __truediv__ methods to Data class).



Revision 3468 - Directory Listing
Modified Tue Feb 22 06:38:57 2011 UTC (6 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Made constructors more efficient.
Only has a very minor affect on performance

Revision 3462 - Directory Listing
Modified Mon Feb 7 02:01:50 2011 UTC (6 years, 10 months ago) by caltinay
Original Path: trunk/escript
Removed debug output.


Revision 3454 - Directory Listing
Modified Tue Jan 25 04:00:29 2011 UTC (6 years, 10 months ago) by caltinay
Original Path: trunk/escript
Fixed some minor doxygen issues.


Revision 3452 - Directory Listing
Modified Tue Jan 25 01:53:57 2011 UTC (6 years, 10 months ago) by caltinay
Original Path: trunk/escript
Fixed building cookbook, including toc (scons scans for keywords in the tex
files but not in .cls as it seems).
Also fixed a few epydoc warnings and typos.



Revision 3440 - Directory Listing
Modified Fri Jan 14 00:04:53 2011 UTC (6 years, 11 months ago) by gross
Original Path: trunk/escript
a second AMG interpolation implemented

Revision 3437 - Directory Listing
Modified Mon Jan 10 05:05:15 2011 UTC (6 years, 11 months ago) by plaub
Original Path: trunk/escript
Fixed test for new default arguments


Revision 3436 - Directory Listing
Modified Mon Jan 10 02:06:07 2011 UTC (6 years, 11 months ago) by plaub
Original Path: trunk/escript
Added/modified AMG tests:

  - "self.failUnless(...)" became "self.assertTrue(...)"
    because fail* is soon to be deprecated,
  - fixed logical error in self.assertTrue argument,
  - added another test, 'testSquare'.

Added some print statements to AMG.c in verbose mode to
identify which of the stopping conditions were fulfilled.

Changed default AMG parameters for 'setNumPreSweeps' and 
'setNumPostSweeps' to 1 (huge speed improvment).

P.S Beware of bugs in the above code; I have only proved 
it correct, not tried it... Jokes!



Revision 3435 - Directory Listing
Modified Fri Jan 7 03:40:39 2011 UTC (6 years, 11 months ago) by gross
Original Path: trunk/escript
initial value changed

Revision 3434 - Directory Listing
Modified Fri Jan 7 03:35:58 2011 UTC (6 years, 11 months ago) by gross
Original Path: trunk/escript
initial value changed

Revision 3433 - Directory Listing
Modified Fri Jan 7 02:39:05 2011 UTC (6 years, 11 months ago) by gross
Original Path: trunk/escript
initial value changed

Revision 3432 - Directory Listing
Modified Fri Jan 7 01:32:07 2011 UTC (6 years, 11 months ago) by jfenwick
Original Path: trunk/escript
Made import statements a bit more specific to clean up the epydoc

Revision 3431 - Directory Listing
Modified Fri Jan 7 01:19:21 2011 UTC (6 years, 11 months ago) by gross
Original Path: trunk/escript
redundant setMinCoarseMatrixSparsity removed.

Revision 3402 - Directory Listing
Modified Tue Dec 7 07:36:12 2010 UTC (7 years ago) by gross
Original Path: trunk/escript
AMG support now block size > 3 (requires clapack or MKL).

additional diagnostics for AMG 



Revision 3390 - Directory Listing
Modified Thu Dec 2 00:34:37 2010 UTC (7 years ago) by jfenwick
Original Path: trunk/escript
RandomData added


Revision 3379 - Directory Listing
Modified Wed Nov 24 04:48:49 2010 UTC (7 years ago) by gross
Original Path: trunk/escript
some clarification on lumping

Revision 3378 - Directory Listing
Modified Tue Nov 23 05:09:25 2010 UTC (7 years ago) by caltinay
Original Path: trunk/escript
Pass dictionary of data objects to EscriptDataset as kwargs in DataManager.


Revision 3375 - Directory Listing
Modified Tue Nov 23 00:37:23 2010 UTC (7 years ago) by jfenwick
Original Path: trunk/escript
Fix to unit tests


Revision 3369 - Directory Listing
Modified Fri Nov 19 06:26:11 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/escript
matrix balance introduced in paso

Revision 3368 - Directory Listing
Modified Fri Nov 19 05:59:46 2010 UTC (7 years, 1 month ago) by jfenwick
Original Path: trunk/escript
3d interpolateTable support.
New more generic interface for table interpolation.
tests and doco updated

Revision 3360 - Directory Listing
Modified Thu Nov 18 00:20:21 2010 UTC (7 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Fix some epydoc errors
Fixed issue 564
removed minimize.py since it hasn't worked in who knows how long

Revision 3358 - Directory Listing
Modified Wed Nov 17 08:02:32 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/escript
a more flexiblae version of safeDiv

Revision 3352 - Directory Listing
Modified Tue Nov 16 03:58:09 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/escript
exposure of AMG options

Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/escript
escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.


Revision 3344 - Directory Listing
Modified Thu Nov 11 23:26:52 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/escript
Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK



Revision 3317 - Directory Listing
Modified Thu Oct 28 00:50:41 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/escript
Removed bogus mpi.h includes, replaced others by our esysUtils wrapper
and rearranged so that the wrapper always comes before netcdf which fixes
linking problems when disabling mpi on systems with netCDF 4.x.


Revision 3313 - Directory Listing
Modified Tue Oct 26 22:00:09 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/escript
some print statements removed

Revision 3283 - Directory Listing
Modified Mon Oct 18 22:39:28 2010 UTC (7 years, 2 months ago) by gross
Original Path: trunk/escript
AMG reengineered, BUG is Smoother fixed.



Revision 3269 - Directory Listing
Modified Wed Oct 13 03:21:50 2010 UTC (7 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Fixed some intel compiler warnings.
Put linearPDEs back the way it was and present a common interface for dudley and finley (as per Lutz)


Revision 3267 - Directory Listing
Modified Wed Oct 13 02:12:06 2010 UTC (7 years, 2 months ago) by caltinay
Original Path: trunk/escript
Renamed restarts.py to datamanager.py, added a method to explicitly set the
domain without adding data. Calling export() without domain/data will now
output a warning. Some additional cleanup.


Revision 3260 - Directory Listing
Modified Mon Oct 11 03:41:35 2010 UTC (7 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Removing dead files


Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (7 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Merging dudley and scons updates from branches


Revision 3201 - Directory Listing
Modified Thu Sep 23 06:54:18 2010 UTC (7 years, 2 months ago) by gross
Original Path: trunk/escript
bug in meanValue fixed.

Revision 3192 - Directory Listing
Modified Fri Sep 17 04:02:57 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
- weipa's saveVTK will now save multiple files if the data objects to write are
  not on the same mesh.
- the save* methods now also add the appropriate file extension if not already
  supplied


Revision 3188 - Directory Listing
Modified Thu Sep 16 04:36:38 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Fixed deletion of old restart directories with a checkpoint freq>1.


Revision 3186 - Directory Listing
Modified Thu Sep 16 01:23:53 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Added checkpoint frequency setting to DataManager so that visualisation files
can be created independent of restart files. Also removed the overhead of
creating an EscriptDataset instance for the restart-only case.



Revision 3160 - Directory Listing
Modified Mon Sep 6 09:17:28 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/escript
bug fixed in RILU and test modified.

Revision 3158 - Directory Listing
Modified Mon Sep 6 06:09:11 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/escript
GS and Jacobi are now used through the same interface.

Revision 3147 - Directory Listing
Modified Fri Sep 3 02:03:05 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Don't clear domain on error. Moved adding Metadata-tags to the C++ level.


Revision 3139 - Directory Listing
Modified Thu Sep 2 06:37:43 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Fixed a typo.


Revision 3133 - Directory Listing
Modified Thu Sep 2 02:04:29 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Added methods to set mesh labels and units to DataManager.


Revision 3132 - Directory Listing
Modified Thu Sep 2 01:48:31 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Removed unused variable.


Revision 3131 - Directory Listing
Modified Thu Sep 2 01:40:47 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
DataManager now uses Python magic to figure out how to load the domain without
hardcoding anything finley-specific.


Revision 3128 - Directory Listing
Modified Wed Sep 1 03:54:09 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
-Added mesh axis label/unit and variable unit support to weipa's Silo writer
-Created EscriptDataset python wrapper
-Some code cleanup and a ghost zone fix for the VisIt interface


Revision 3111 - Directory Listing
Modified Thu Aug 26 06:49:42 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/escript
some diagnostics for time step backtracing added

Revision 3110 - Directory Listing
Modified Thu Aug 26 05:42:18 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Fixed a typo.


Revision 3109 - Directory Listing
Modified Thu Aug 26 04:33:18 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Added accessor for the simulation cycle and log which directory was used to
restart.


Revision 3106 - Directory Listing
Modified Wed Aug 25 08:15:38 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Fixed export when 'work_dir' is set to sth other than the current dir.


Revision 3103 - Directory Listing
Modified Tue Aug 24 07:01:33 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/escript
test fix

Revision 3102 - Directory Listing
Modified Tue Aug 24 06:14:21 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
Inject the DataManager class to the escript namespace.


Revision 3101 - Directory Listing
Modified Tue Aug 24 06:08:12 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/escript
weipa's saveVTK now stores metadata schema & string as expected.


Revision 3100 - Directory Listing
Modified Mon Aug 23 09:31:09 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/escript
bug in ILU0 fixed.

Revision 3096 - Directory Listing
Modified Thu Aug 19 01:40:52 2010 UTC (7 years, 4 months ago) by caltinay
Original Path: trunk/escript
-New VisIt simulation control interface in weipa (uses VisIt's simv2)
-Rewrote restarts.py to be a more generic data manager for restarts and exports
-Removed weipa python file since the functionality is now handled by restarts.py


Revision 3094 - Directory Listing
Modified Fri Aug 13 08:38:06 2010 UTC (7 years, 4 months ago) by gross
Original Path: trunk/escript
The MPI and sequational GAUSS_SEIDEL have been merged.
The couring and main diagonal pointer is now manged by the patternm which means that they are calculated once only even if the preconditioner is deleted.




Revision 3084 - Directory Listing
Modified Wed Aug 4 03:26:50 2010 UTC (7 years, 4 months ago) by gross
Original Path: trunk/escript
small bug fixed.

Revision 3081 - Directory Listing
Modified Tue Aug 3 05:36:42 2010 UTC (7 years, 4 months ago) by gross
Original Path: trunk/escript
a light restart manager added.

Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (7 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Switched the build_dir keyword param to variant_dir.
Should fix issue 525.



Revision 3074 - Directory Listing
Modified Tue Jul 27 01:47:45 2010 UTC (7 years, 4 months ago) by gross
Original Path: trunk/escript
tolerance for PCG relaxed.

Revision 3071 - Directory Listing
Modified Wed Jul 21 05:37:30 2010 UTC (7 years, 5 months ago) by gross
Original Path: trunk/escript
new darcy flux

Revision 3059 - Directory Listing
Modified Tue Jul 6 03:31:48 2010 UTC (7 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Fix error message in launcher. Allow non-data objects to be passed to condEval

Revision 3051 - Directory Listing
Modified Tue Jun 29 00:45:49 2010 UTC (7 years, 5 months ago) by lgao
Original Path: trunk/escript
Hybrid MPI/OpenMP versioned Gauss_Seidel preconditioner is added. 
To use it, use "SolverOptions.GAUSS_SEIDEL_MPI" in python script. 



Revision 3035 - Directory Listing
Modified Thu Jun 10 01:48:41 2010 UTC (7 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Lazy node support for conditional evaluation.
It should be a complete operation now.


Revision 3034 - Directory Listing
Modified Wed Jun 9 03:24:23 2010 UTC (7 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Adding unit tests for condEval


Revision 3032 - Directory Listing
Modified Mon May 31 02:58:15 2010 UTC (7 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Add work around for windows not liking chained X::Y::Z.
TestDomain now supports tags and getX.
This is to allow testing for some features without invoking finley


Revision 3031 - Directory Listing
Modified Thu May 27 04:04:33 2010 UTC (7 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Adding condEval function to Data.
Unit tests and a different name to follow.

Revision 3018 - Directory Listing
Modified Thu Apr 29 21:35:24 2010 UTC (7 years, 7 months ago) by gross
Original Path: trunk/escript
some stupid lines removed

Revision 2996 - Directory Listing
Modified Tue Mar 23 06:24:09 2010 UTC (7 years, 8 months ago) by artak
Original Path: trunk/escript
Tests are added for GAUSS_SEIDEL

Revision 2995 - Directory Listing
Modified Tue Mar 23 06:14:26 2010 UTC (7 years, 8 months ago) by artak
Original Path: trunk/escript
AMG levels maximum set 5

Revision 2994 - Directory Listing
Modified Tue Mar 23 06:13:14 2010 UTC (7 years, 8 months ago) by artak
Original Path: trunk/escript
AMG levels maximum set 5

Revision 2988 - Directory Listing
Modified Tue Mar 16 06:14:30 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/escript
C-level lumping switched on

Revision 2987 - Directory Listing
Modified Tue Mar 16 01:32:43 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/escript
FCT solver rewritten

Revision 2962 - Directory Listing
Modified Wed Mar 3 01:03:56 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/escript
bar as unit added

Revision 2960 - Directory Listing
Modified Tue Mar 2 07:54:11 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/escript
new DarcyFlux solver

Revision 2954 - Directory Listing
Modified Fri Feb 26 06:09:47 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/escript
bug introduced by a smart programmer to the Locator has been fixed?


Revision 2948 - Directory Listing
Modified Thu Feb 25 04:54:30 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/escript
a new almost completed version of the cookbook

Revision 2941 - Directory Listing
Modified Mon Feb 22 05:17:43 2010 UTC (7 years, 9 months ago) by caltinay
Original Path: trunk/escript
saveESD now doesn't store the absolute path to the files in the ESD file so
the whole dataset can be moved easily.


Revision 2940 - Directory Listing
Modified Fri Feb 19 00:38:45 2010 UTC (7 years, 10 months ago) by caltinay
Original Path: trunk/escript
Minor potential optimization: prefer empty() over size()==0.


Revision 2938 - Directory Listing
Modified Thu Feb 18 00:24:35 2010 UTC (7 years, 10 months ago) by caltinay
Original Path: trunk/escript
saveESD: Add a warning about the experimental status of ESD.
Save the ESD file within the data directory.


Revision 2926 - Directory Listing
Modified Thu Feb 4 23:13:53 2010 UTC (7 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Attempting to fix a problem with windows linking in the ironically named INKNOWWHATIMDOING section


Revision 2923 - Directory Listing
Modified Thu Feb 4 04:05:36 2010 UTC (7 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Bringing non-release specific things from stage3.1 r2922 back to trunk


Revision 2912 - Directory Listing
Modified Wed Feb 3 03:31:24 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/escript
some missing functions

Revision 2905 - Directory Listing
Modified Tue Feb 2 04:26:42 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/escript
some missing files.

Revision 2891 - Directory Listing
Modified Fri Jan 29 00:26:07 2010 UTC (7 years, 10 months ago) by caltinay
Original Path: trunk/escript
Fix for ambiguous call to sqrt...


Revision 2884 - Directory Listing
Modified Thu Jan 28 05:00:59 2010 UTC (7 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Updated various nan checks to consider the windows _isnan

The default compiler flags have changed as well.
+ intel will now take -std=c99 instead of -ansi
+ gcc has -ansi removed which means it defaults to gnu99

We could have set gcc to -std=c99 as well but that gives a 
warning on g++ which gets converted into an error by our
pedantic warning.

Rationale:
We need something more than ansi to get proper nan handling.
- We currently don't have any code which does not comply with ansi
  but the nan checks don't work.

Impact:
If we want our code to still be able to compile on older compilers
(at reduced functionality) we need to be careful not to introduce other
c99-isms.
If we don't care, then it's time for some celebratory // comments.



Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (7 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Don't panic.
Updating copyright stamps


Revision 2867 - Directory Listing
Modified Fri Jan 22 06:28:02 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/escript
now option -i is used if no script is given

Revision 2863 - Directory Listing
Modified Thu Jan 21 07:18:37 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/escript
fix for mantis 454

Revision 2862 - Directory Listing
Modified Thu Jan 21 04:45:39 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/escript
more review in the cookbook

Revision 2860 - Directory Listing
Modified Tue Jan 19 05:25:39 2010 UTC (7 years, 11 months ago) by gross
Original Path: trunk/escript
prints removed.

Revision 2858 - Directory Listing
Modified Tue Jan 19 01:07:52 2010 UTC (7 years, 11 months ago) by gross
Original Path: trunk/escript
small fixes with the reduced solution for the transport problem

Revision 2857 - Directory Listing
Modified Mon Jan 18 07:44:42 2010 UTC (7 years, 11 months ago) by gross
Original Path: trunk/escript
test for ApproximationOrder added and Transport type problem now choose reduced when necessary only.

Revision 2856 - Directory Listing
Modified Mon Jan 18 04:14:37 2010 UTC (7 years, 11 months ago) by gross
Original Path: trunk/escript
FunctionSpaces provide now some information about their approximation order.

Revision 2855 - Directory Listing
Modified Mon Jan 18 03:39:29 2010 UTC (7 years, 11 months ago) by jfenwick
Original Path: trunk/escript
Fixed


Revision 2852 - Directory Listing
Modified Mon Jan 18 00:22:23 2010 UTC (7 years, 11 months ago) by jfenwick
Original Path: trunk/escript
Fix MPI issue in toString.
Fixes unit tet failure in myfistrscript.py


Revision 2850 - Directory Listing
Modified Fri Jan 15 07:14:25 2010 UTC (7 years, 11 months ago) by gross
Original Path: trunk/escript
the powerlaw is working again. tests are switched on again.

Revision 2843 - Directory Listing
Modified Thu Jan 14 05:51:28 2010 UTC (7 years, 11 months ago) by gross
Original Path: trunk/escript
new compressible solver

Revision 2841 - Directory Listing
Modified Thu Jan 14 01:02:56 2010 UTC (7 years, 11 months ago) by jfenwick
Original Path: trunk/escript
Unit tests for 2838 and adding setTags variant which takes a string instead of a tag num.



Revision 2838 - Directory Listing
Modified Wed Jan 13 06:01:03 2010 UTC (7 years, 11 months ago) by jfenwick
Original Path: trunk/escript
Vector, Tensor, Tensor3, Tensor4 can now take a (nested) sequence for 
their initial value.



Revision 2835 - Directory Listing
Modified Mon Jan 11 01:23:52 2010 UTC (7 years, 11 months ago) by artak
Original Path: trunk/escript
Default smoother set to Gauss-Seidel. This one more robust than jacobi, but jacobi is faster.

Revision 2828 - Directory Listing
Modified Tue Dec 22 01:24:40 2009 UTC (7 years, 11 months ago) by artak
Original Path: trunk/escript
Smoother for AMG now can be selected from python. Now only Jacobi and Gauss-Seidel are available as smoothers.

Revision 2827 - Directory Listing
Modified Fri Dec 18 03:41:09 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
There is now a mechanism to pass a C function into escript and invoke it on each datapoint with:

applyBinaryCFunction

Warning in order to use this function your escript must be compiled with 
scons ...  iknowwhatimdoing=yes

---------------------
Because this code relies on casts that the C standard does not allow some code has been moved into Dodgy{.h .cpp}

Scons files have been modified to treat these files specially [Warnings are not errors for these files.]

Revision 2825 - Directory Listing
Modified Thu Dec 17 00:10:06 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
More fixes to resolveGroup


Revision 2824 - Directory Listing
Modified Wed Dec 16 01:22:56 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
ResolveGroup fixed so it actually resolves groups.
Children, when you iterate backwards remember its i>=0 not i>0


Revision 2817 - Directory Listing
Modified Thu Dec 10 02:12:33 2009 UTC (8 years ago) by artak
Original Path: trunk/escript
test is added for selecting standard coarsening.

Revision 2816 - Directory Listing
Modified Thu Dec 10 02:09:43 2009 UTC (8 years ago) by artak
Original Path: trunk/escript
Standard coarsening is added to options list.

Revision 2809 - Directory Listing
Modified Mon Dec 7 03:39:37 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
TestDomain now divides the total number of samples between ranks rather 
than putting all samples on all ranks.


Revision 2799 - Directory Listing
Modified Thu Dec 3 01:35:08 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
resolveGroup function added to python.
Unit tests for resolveGroup, resolve and delay.

Revision 2795 - Directory Listing
Modified Wed Dec 2 02:39:23 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Removed node limit on lazy expressions.
The parameter LAZY_STR_FMT {0,1,2}  controls how lazy expressions are printed.
0 gives default output
1 gives a tree form.
2 just prints depth

Revision 2793 - Directory Listing
Modified Tue Dec 1 06:10:10 2009 UTC (8 years ago) by gross
Original Path: trunk/escript
some new util functions

Revision 2792 - Directory Listing
Modified Tue Dec 1 05:02:18 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Oops.
matrixInverse now checks MPI to see if any other ranks raised exceptions.

Revision 2791 - Directory Listing
Modified Tue Dec 1 03:36:36 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Added expression depth to toString for LazyData.


Revision 2789 - Directory Listing
Modified Fri Nov 27 05:40:25 2009 UTC (8 years ago) by caltinay
Original Path: trunk/escript
Removed unused variable from OpenMP block.
Fixes compilation error with gcc 4.3.


Revision 2787 - Directory Listing
Modified Fri Nov 27 05:03:09 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Worked around icc11 problem in table interpolate.
Best guess is that a stackframe was getting mauled somehow.



Revision 2785 - Directory Listing
Modified Thu Nov 26 05:17:40 2009 UTC (8 years ago) by lgao
Original Path: trunk/escript
Minor fix for unused variables



Revision 2783 - Directory Listing
Modified Thu Nov 26 05:07:33 2009 UTC (8 years ago) by lgao
Original Path: trunk/escript
process C_TensorBinaryOperation at the level of a whole sample rather than 
each datapoint when an Expanded data is operating with a Constant data. This
could improve the efficiency of the non-lazy version escipt. 



Revision 2782 - Directory Listing
Modified Thu Nov 26 04:42:29 2009 UTC (8 years ago) by caltinay
Original Path: trunk/escript
Added missing var declaration.


Revision 2779 - Directory Listing
Modified Thu Nov 26 03:51:15 2009 UTC (8 years ago) by caltinay
Original Path: trunk/escript
Fixed more instances of garbage=cstring+integer errors (d'oh!)


Revision 2777 - Directory Listing
Modified Thu Nov 26 01:06:00 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Added the LAZY_STACK_PROF #define for Lazy.
If enabled lazy will print the (roughly) maximum stack used by any openmp 
thread over the course of this session.


Revision 2774 - Directory Listing
Modified Wed Nov 25 04:24:03 2009 UTC (8 years ago) by artak
Original Path: trunk/escript
#ifndef changed to #ifdef in makeNaN

Revision 2773 - Directory Listing
Modified Wed Nov 25 04:02:01 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Hadn't realised isnan was a macro.
Checking for it rather than FP_NAN


Revision 2771 - Directory Listing
Modified Wed Nov 25 01:38:49 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Fix


Revision 2770 - Directory Listing
Modified Wed Nov 25 01:24:51 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Removed buffer implementation of Lazy.
Removed supporting Alloc/Free Sample buffer calls.

Revision 2769 - Directory Listing
Modified Tue Nov 24 00:36:22 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Unit tests for NaN handling

Revision 2768 - Directory Listing
Modified Mon Nov 23 23:56:14 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
Dodge problem in NoPDE class


Revision 2766 - Directory Listing
Modified Mon Nov 23 05:10:53 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/escript
inf, sup and Lsup now correctly handle +-infinity.
They also will return NaN if any part of their input is NaN.

This will break unit tests since it exposes the hidden bug (#447 in mantis)

This code relies on the ability to test for NaNs.
To do this it makes use of macros and functions from C99.
If you do not have a C99 compiler, then you will probably get the old behaviour.
That is, you won't know when you have NaNs.


Also did minor tweak to saveDataCSV doco.

Revision 2763 - Directory Listing
Modified Thu Nov 19 06:28:03 2009 UTC (8 years, 1 month ago) by lgao
Original Path: trunk/escript
Minor fix to my previous commit.




Revision 2762 - Directory Listing
Modified Thu Nov 19 06:24:44 2009 UTC (8 years, 1 month ago) by lgao
Original Path: trunk/escript
fix the compilation problem I introduced for Non-MPI build due
to my last commit for Data::toString().



Revision 2760 - Directory Listing
Modified Thu Nov 19 05:22:45 2009 UTC (8 years, 1 month ago) by artak
Original Path: trunk/escript
The first version of the new AMG preconditioner. It need a lot of polishing for efficiency. Old AMG now called AMLI preconditioner.

Revision 2757 - Directory Listing
Modified Thu Nov 19 01:04:57 2009 UTC (8 years, 1 month ago) by lgao
Original Path: trunk/escript
Solve the print statement problem for MPI program (matis issue 465). 



Revision 2753 - Directory Listing
Modified Wed Nov 18 06:06:50 2009 UTC (8 years, 1 month ago) by lgao
Original Path: trunk/escript
fix bugs in minGlobalDataPoint() and maxGlobalDataPoint()



Revision 2748 - Directory Listing
Modified Tue Nov 17 07:32:59 2009 UTC (8 years, 1 month ago) by gross
Original Path: trunk/escript
Macro elements are implemented now. VTK writer for macro elements still needs testing.

Revision 2747 - Directory Listing
Modified Tue Nov 17 05:19:59 2009 UTC (8 years, 1 month ago) by lgao
Original Path: trunk/escript
Minor rivision to minGlobalDataPoint()



Revision 2746 - Directory Listing
Modified Tue Nov 17 05:13:51 2009 UTC (8 years, 1 month ago) by lgao
Original Path: trunk/escript
Fix the error in minGlobalDataPoint() and maxGlobalDataPoint() due to 
the fact that the number of samples on one MPI rank could be 0. Therefore,
not every MPI rank has valid min/max data point. 



Revision 2745 - Directory Listing
Modified Tue Nov 17 04:23:02 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Added getInfLocator and getSupLocator to pdetools.
This means if you want to use them, you will need to import them.
These methods return a locator to a point with the smallest/largest value.

Added resolve() and delay() to utils.
Now you can do things like:

d=delay(v)
..
..
z=resolve(d+1)



Revision 2742 - Directory Listing
Modified Thu Nov 12 06:03:37 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Merging changes from the lapack branch.

The inverse() operation has been moved into c++. [No lazy support for this operation yet.]
Optional Lapack support has been added for matrices larger than 3x3. 
service0 is set to use mkl_lapack.




Revision 2738 - Directory Listing
Modified Fri Nov 6 05:33:13 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Taipan and DataVector use size_type (currently long) internally to talk 
about sizes.
[A lot more work needs to be done on this].
Exceptions now give nicer messages and output the problematic numbers.

Some minor doco errors fixed.

escript.util.mkDir
Now checks to see if the pathname already exists as a non-directory.
On suggestion from slanger it now calls makedirs.




Revision 2737 - Directory Listing
Modified Tue Nov 3 00:44:00 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/escript
icc will now record compiler options in libraries.
escriptParams now has a pretty printer option for lazy expressions.

Revision 2735 - Directory Listing
Modified Mon Nov 2 02:03:24 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Fixed bug where calling minval() reintroduced laziness after it had been removed.


Revision 2734 - Directory Listing
Modified Fri Oct 30 05:39:48 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Fixed bug in lazy maxval and minval


Revision 2725 - Directory Listing
Modified Wed Oct 21 23:44:06 2009 UTC (8 years, 1 month ago) by artak
Original Path: trunk/escript
AMG unit tests are disabled for 2-nd order elements.

Revision 2724 - Directory Listing
Modified Sun Oct 18 23:50:18 2009 UTC (8 years, 2 months ago) by jfenwick
Original Path: trunk/escript
And again


Revision 2723 - Directory Listing
Modified Sun Oct 18 23:44:37 2009 UTC (8 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Use correct types for MPI op parameters


Revision 2721 - Directory Listing
Modified Fri Oct 16 05:40:12 2009 UTC (8 years, 2 months ago) by jfenwick
Original Path: trunk/escript
minval and maxval are now lazy operations (they weren't before).
Whether or not Lsup, sup and inf resolve their arguments before computing answers is controlled by the escriptParam 'RESOLVE_COLLECTIVE'.
Note: integrate() still forces a resolve.

Added some unit tests for operations which weren't tested before.
Added deepcopy implementations for lazy operations which got missed somehow.

Revision 2719 - Directory Listing
Modified Wed Oct 14 06:38:03 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/escript
a new Stokes solver added

Revision 2716 - Directory Listing
Modified Tue Oct 13 04:58:08 2009 UTC (8 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Small mod - process C_Tensor??Operation on ExpandedData as a whole 
sample rather than a datapoint at a time.
This is just to bring Non-Lazy into line with Lazy.


Revision 2713 - Directory Listing
Modified Wed Oct 7 00:35:06 2009 UTC (8 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Fixes for windows.
Copied from Thomas Poulet


Revision 2710 - Directory Listing
Modified Mon Oct 5 23:15:04 2009 UTC (8 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Change to error output requested by Thomas Poulet


Revision 2693 - Directory Listing
Modified Tue Sep 29 05:47:45 2009 UTC (8 years, 2 months ago) by artak
Original Path: trunk/escript
sorry python Indentation Error, fixed 

Revision 2692 - Directory Listing
Modified Tue Sep 29 05:35:31 2009 UTC (8 years, 2 months ago) by artak
Original Path: trunk/escript
minor typo

Revision 2691 - Directory Listing
Modified Tue Sep 29 05:30:27 2009 UTC (8 years, 2 months ago) by artak
Original Path: trunk/escript
Projector class had getSolverOptions(), but was returning null, so changed to return correct solver options.

Revision 2689 - Directory Listing
Modified Tue Sep 29 05:22:51 2009 UTC (8 years, 2 months ago) by artak
Original Path: trunk/escript
getSolverOptionsDiv was returning Pressure options instead of Div equation options

Revision 2688 - Directory Listing
Modified Tue Sep 29 05:19:43 2009 UTC (8 years, 2 months ago) by artak
Original Path: trunk/escript
changes to default threshold values

Revision 2683 - Directory Listing
Modified Tue Sep 29 02:20:22 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/escript
documentation for pycad added.

Revision 2678 - Directory Listing
Modified Wed Sep 23 23:54:16 2009 UTC (8 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Some fixes for compile errors for gcc_testing_version


Revision 2677 - Directory Listing
Modified Tue Sep 22 00:48:00 2009 UTC (8 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Removed stuff in user guide about needing to make table larger to allow
boundary points.
The table interpolation is now OMP parallel.



Revision 2676 - Directory Listing
Modified Mon Sep 21 08:06:37 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/escript
FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value

Revision 2675 - Directory Listing
Modified Mon Sep 21 02:32:17 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/escript
getMinValue added to the fault system.

Revision 2673 - Directory Listing
Modified Fri Sep 18 05:33:10 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Some fixes to interpolation


Revision 2671 - Directory Listing
Modified Thu Sep 17 06:37:22 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/escript
missing offset added in interpolation table

Revision 2669 - Directory Listing
Modified Thu Sep 17 06:01:30 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Added a bunch of valgrind supressions. Hopefully this will make it more useful.

Asking for an offset on a DataConstant containing no samples no longer fails under debug builds.
I've disabled the sample and dataPoint bounds checks since they don't make sense on DataConstant.

Revision 2668 - Directory Listing
Modified Thu Sep 17 04:04:09 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/escript
some clarification in the table interpolation

Revision 2665 - Directory Listing
Modified Wed Sep 16 02:56:02 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/escript
clarification in the fault depth vector

Revision 2663 - Directory Listing
Modified Tue Sep 15 06:04:44 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/escript
finally there is a 3D version for the fault system class

Revision 2661 - Directory Listing
Modified Fri Sep 11 00:59:59 2009 UTC (8 years, 3 months ago) by artak
Original Path: trunk/escript
Finially unit tests for AMG preconditioner for single equations as well as for systems. Minor bug in AMG is also fixed

Revision 2654 - Directory Listing
Modified Tue Sep 8 07:11:12 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/escript
2D fault systems are now working. 3D still needs work.

Revision 2653 - Directory Listing
Modified Tue Sep 8 04:26:30 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Fix bug in maxGlobalDataPoint and minGlobalDataPoint.
They now give the correct answers and the datapoint ids returned are globally
correct.

Removed some #defines from before COW
Removed hasNoSamples() - I don't trust myself to use that properly let alone anybody else.



Revision 2650 - Directory Listing
Modified Mon Sep 7 03:38:50 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Reducing the concentration of stupid.


Revision 2649 - Directory Listing
Modified Mon Sep 7 03:33:55 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/escript
Some small fixes in FaultSystem

Revision 2647 - Directory Listing
Modified Fri Sep 4 05:25:25 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/escript
fault system add. There is still an example for the usage missing.

Revision 2646 - Directory Listing
Modified Fri Sep 4 00:13:00 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Unit tests and user doco for interpolation and saveCSV

Revision 2644 - Directory Listing
Modified Wed Sep 2 04:14:03 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Add unit tests for saveDataCSV which should be ready for use now.
Keyword args are now output in sorted order.

Removed some unneeded functions.

Revision 2642 - Directory Listing
Modified Tue Sep 1 04:15:50 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
pre cleanup

Revision 2641 - Directory Listing
Modified Mon Aug 31 07:41:49 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Fixed some of my stupids related to MPI compile errors.


Revision 2640 - Directory Listing
Modified Mon Aug 31 06:22:10 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Adding getMPIComm


Revision 2637 - Directory Listing
Modified Fri Aug 28 04:12:24 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
saveDataCSV looks good but does not do MPI yet.
Also not unit tested.


Revision 2635 - Directory Listing
Modified Thu Aug 27 04:54:41 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
A bunch of changes related to saveDataCSV.
[Not completed or unit tested yet]

Added saveDataCSV to util.py
AbstractDomain (and MeshAdapter) have a commonFunctionSpace method to 
take a group of FunctionSpaces and return something they can all be interpolated to.

Added pointToStream() in DataTypes to help print points.

added actsConstant() to data - required because DataConstant doesn't store samples the same way other Data do.

Revision 2628 - Directory Listing
Modified Tue Aug 25 03:50:00 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Fixed linkage on getTestDomainFunctionSpace.

added Data.interpolateTable to perform 2D interpolation.
It needs better unit tests though.

Revision 2627 - Directory Listing
Modified Mon Aug 24 01:57:34 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/escript
some bugs in pycad fixed.


Revision 2626 - Directory Listing
Modified Mon Aug 24 00:48:31 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Making arg0 and arg params in C_GeneralTensorProduct non-optional.
[The using the default args caused an exception.]


Revision 2625 - Directory Listing
Modified Fri Aug 21 06:30:25 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

Revision 2620 - Directory Listing
Modified Thu Aug 20 06:24:00 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/escript
some small additions to pycad to make life a bit easier.

Revision 2607 - Directory Listing
Modified Tue Aug 18 01:02:56 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Added getMPIWorldSum function to the esys.escript module.
This function takes an integer from each member of the MPIWorld.
This will hopefully address mantis issue 359

Added unit tests for most of the c++ free functions in the module.




Revision 2602 - Directory Listing
Modified Tue Aug 11 00:38:42 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Merging changes made for release3.0 back to trunk.

Revision 2599 - Directory Listing
Modified Fri Aug 7 00:16:02 2009 UTC (8 years, 4 months ago) by caltinay
Original Path: trunk/escript
saveESD: added option to save mesh at each timestep if required.


Revision 2596 - Directory Listing
Modified Thu Aug 6 03:09:03 2009 UTC (8 years, 4 months ago) by lgao
Original Path: trunk/escript
Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)



Revision 2594 - Directory Listing
Modified Thu Aug 6 00:47:48 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/escript
change to the default value for toListOfTuples

Revision 2592 - Directory Listing
Modified Thu Aug 6 00:43:19 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/escript
additional tests for the Locator

Revision 2564 - Directory Listing
Modified Tue Jul 28 04:46:38 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/escript
reduced PDE solutions added to topography

Revision 2563 - Directory Listing
Modified Tue Jul 28 03:50:45 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/escript
reengineered version of the mountain class so it becomes easier to use for the convection code

Revision 2551 - Directory Listing
Modified Thu Jul 23 09:19:15 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/escript
a problem with the sparse matrix unrolling fixed.

Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Remainder of copyright date fixes

Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Updating copyright notices

Revision 2535 - Directory Listing
Modified Thu Jul 16 23:39:58 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
LinearPDE is now updating stiffness matrix and right hand side even only geometry is modified. fix for 333

Revision 2534 - Directory Listing
Modified Thu Jul 16 06:49:19 2009 UTC (8 years, 5 months ago) by caltinay
Original Path: trunk/escript
Changed examples, tests and tutorials to save VTK files as .vtu instead .xml.
Visit doesn't know what to do with xml's and vtu is the proper extension
anyway.


Revision 2533 - Directory Listing
Modified Wed Jul 15 05:57:01 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
finley delivers now a status identifier of the mesh.

Revision 2526 - Directory Listing
Modified Wed Jul 8 05:52:06 2009 UTC (8 years, 5 months ago) by caltinay
Original Path: trunk/escript
util: Updated saveESD to allow saving of time series. Combined with an update
of the visit plugin this fixes issue 325.


Revision 2524 - Directory Listing
Modified Wed Jul 8 00:39:26 2009 UTC (8 years, 5 months ago) by artak
Original Path: trunk/escript
Minimum size of the coarsest level matrix option added to solver options

Revision 2523 - Directory Listing
Modified Wed Jul 8 00:07:36 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Fixed bug in MPI form of mkDir


Revision 2522 - Directory Listing
Modified Tue Jul 7 06:17:47 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Split test_util_spatial_functions.py into three python files (it had three classes in it).
This reduces memory required to compile down to about 600Mb each as opposed to >1Gb.

This should not affect the tests performed.

Revision 2521 - Directory Listing
Modified Tue Jul 7 00:08:58 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Modified Lazy so that resolving a single sample uses the node cache method.
Fixed some doxygen problems.

Revision 2519 - Directory Listing
Modified Mon Jul 6 00:43:08 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Correcting some doxygen errors

Revision 2517 - Directory Listing
Modified Fri Jul 3 05:27:45 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Fixed bug in Locator


Revision 2514 - Directory Listing
Modified Fri Jul 3 00:57:45 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Fixed compile warning on Mac



Revision 2513 - Directory Listing
Modified Thu Jul 2 08:42:11 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
some fixes in wave.py example

Revision 2502 - Directory Listing
Modified Tue Jun 30 05:49:22 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
tests for examples added. utest is not working yet.

Revision 2501 - Directory Listing
Modified Tue Jun 30 04:43:01 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Caching now works.
Number of levels and nodes permitted in a lazy expression has increased to 70 and 15000.

Revision 2500 - Directory Listing
Modified Tue Jun 30 00:42:38 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Experimental per node cache for lazy evaluation is now available via the 
LAZY_NODE_STORAGE #define 
It's a bit slower and larger for small problems but a bit faster and 
smaller for large (drucker prager) problems.


Revision 2499 - Directory Listing
Modified Mon Jun 29 04:31:00 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
new stand

Revision 2498 - Directory Listing
Modified Mon Jun 29 04:25:23 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
new function MaskFromTag

Revision 2497 - Directory Listing
Modified Mon Jun 29 00:04:45 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Calling resolve now replaces resolved expression with an identity node.


Revision 2496 - Directory Listing
Modified Fri Jun 26 06:09:47 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Added lazy version of swapaxes operation.

Revision 2493 - Directory Listing
Modified Thu Jun 25 02:58:52 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Taipan now prints an error message if new[] throws.
Note, the exception is rethrown after the message is printed.


Revision 2492 - Directory Listing
Modified Wed Jun 24 01:28:57 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
MPI_DOUBLE changed to MPI_INT as lowProc is int

Revision 2487 - Directory Listing
Modified Tue Jun 23 04:26:07 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Fixed const-ness on some return values.
Null-Domain now reports tag one as being in use.

Revision 2486 - Directory Listing
Modified Tue Jun 23 03:38:54 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
a bit more info are printed for the DarcyFlux now.

Revision 2485 - Directory Listing
Modified Mon Jun 22 07:27:31 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
Added unit test file.


Revision 2484 - Directory Listing
Modified Mon Jun 22 04:22:19 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/escript
numarray removed from docu; Locator revised.

Revision 2483 - Directory Listing
Modified Mon Jun 22 03:33:43 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/escript
And Joel closes the barn door.


Revision 2482 - Directory Listing
Modified Fri Jun 19 05:56:20 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Added run_data_access.py to unit tests - tests things like toListOfTuples.
Corrected some doco comments.
Added TestDomain class to escript.
This should allow more testing without resorting to finley.

Revision 2481 - Directory Listing
Modified Fri Jun 19 04:29:06 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Corrected a comment and fixed more bugs in the bulk copyFromArrayToOffset method.

Revision 2480 - Directory Listing
Modified Fri Jun 19 03:35:14 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
test fixed.

Revision 2479 - Directory Listing
Modified Thu Jun 18 06:50:37 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
paso returns now some diagnostics. SCSL has been removed.


Revision 2478 - Directory Listing
Modified Thu Jun 18 06:20:57 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Fixed bug when creating scalar expanded data.
Fixed some comments and moved a variable into anonymous namespace

Revision 2476 - Directory Listing
Modified Wed Jun 17 04:42:13 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Added maxGlobalDataPoint.
Not currently unit tested.

Revision 2474 - Directory Listing
Modified Tue Jun 16 06:32:15 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
linearPDEs has is now using the SolverOptions class to talk to PASO

Revision 2473 - Directory Listing
Modified Mon Jun 15 02:21:07 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Change logging functions so I don't get confused about what they do.
Added parameter to name the log file if called directly.

Revision 2472 - Directory Listing
Modified Thu Jun 11 23:33:47 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Added new params to control auto resolving for lazy data

Revision 2471 - Directory Listing
Modified Thu Jun 11 23:33:06 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Fixed extract of ndarray from xml to properly return booleans.
Modified some strings which had numarray:: in them

Revision 2470 - Directory Listing
Modified Thu Jun 11 08:32:32 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
SolverOption class added. It is not linked with anything.

Revision 2468 - Directory Listing
Modified Thu Jun 11 02:55:51 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
some more work toward numpy

Revision 2465 - Directory Listing
Modified Tue Jun 9 05:01:36 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Changed the default behaviour of Data::toListOfTuples() so that scalars are returned in tuples.
This is to match the behaviour of getTupleForDataPoint.

Revision 2461 - Directory Listing
Modified Fri Jun 5 05:06:31 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Trying to presize a list to reduce runtime of toListOfTuples


Revision 2459 - Directory Listing
Modified Thu Jun 4 06:17:54 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Removed some commented out code.
Added toListOfTuples to the DataObject.

Revision 2458 - Directory Listing
Modified Wed Jun 3 06:18:21 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Various numarray erasures


Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
Merging changes from numpy branch.


Revision 2448 - Directory Listing
Modified Fri May 29 04:47:48 2009 UTC (8 years, 6 months ago) by ahallam
Original Path: trunk/escript
Week 9: implemented cosine taper for wave function, need to work on direct method without lumping, wave propagation velocity is still not correct

Revision 2446 - Directory Listing
Modified Fri May 29 04:24:01 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
same adjustment of nameing

Revision 2445 - Directory Listing
Modified Fri May 29 03:23:25 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
some improvement on convection which ios now working again

Revision 2440 - Directory Listing
Modified Wed May 27 08:45:55 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
convection works now again.

Revision 2438 - Directory Listing
Modified Tue May 26 02:26:52 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/escript
new version of power law (blame Hans)

Revision 2436 - Directory Listing
Modified Mon May 25 05:05:00 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/escript
A fix for escript not compiling on boost 1.39.


Revision 2432 - Directory Listing
Modified Wed May 20 06:06:20 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
power law and incompressible flow is running now

Revision 2431 - Directory Listing
Modified Wed May 20 03:39:57 2009 UTC (8 years, 7 months ago) by jfenwick
Original Path: trunk/escript
Added at the request of Dian.


Revision 2428 - Directory Listing
Modified Tue May 19 04:04:11 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
problem for python2.4 fixed: IOError has no attribute message.

Revision 2425 - Directory Listing
Modified Thu May 14 09:06:35 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
bug in getListOfTags fixed and some tested added

Revision 2422 - Directory Listing
Modified Thu May 14 03:17:28 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
bug in testing saveVTK fixed

Revision 2421 - Directory Listing
Modified Thu May 14 02:29:06 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
vtk writer supports now meta data and meta data schema

Revision 2417 - Directory Listing
Modified Wed May 13 08:18:47 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
some remarks on load and dump added to the users guide.

Revision 2415 - Directory Listing
Modified Wed May 13 02:48:39 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
FileWriter added: this class takes care of writing data which are global in MPI to a file. It is recommended to use this class rather then the build in open as it takes care of the case of many processors.

Revision 2403 - Directory Listing
Modified Wed Apr 29 06:08:18 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
units support Celsius, Farenheit and kelvin now

Revision 2399 - Directory Listing
Modified Tue Apr 28 12:04:34 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
some improvements on units

Revision 2398 - Directory Listing
Modified Tue Apr 28 04:41:53 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/escript
first version of units in escript




Revision 2386 - Directory Listing
Modified Wed Apr 15 03:54:25 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/escript
some minor fixes

Revision 2384 - Directory Listing
Modified Wed Apr 15 00:17:20 2009 UTC (8 years, 8 months ago) by jfenwick
Original Path: trunk/escript
Added getDataRW to DataC

Revision 2370 - Directory Listing
Modified Mon Apr 6 06:41:49 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/escript
some modifications to docu for MPI

Revision 2354 - Directory Listing
Modified Wed Apr 1 04:01:58 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/escript
some modifications to the Darcy flux solver to make it faster and more robust.

Revision 2351 - Directory Listing
Modified Tue Mar 31 08:26:41 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/escript
some fixes in the transport solver

Revision 2349 - Directory Listing
Modified Mon Mar 30 08:14:23 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/escript
first version of escript command: no MPI support yet.

Revision 2348 - Directory Listing
Modified Mon Mar 30 06:27:14 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/escript
obsolet

Revision 2344 - Directory Listing
Modified Mon Mar 30 02:13:58 2009 UTC (8 years, 8 months ago) by jfenwick
Original Path: trunk/escript
Change __url__ to launchpad site


Revision 2337 - Directory Listing
Modified Thu Mar 26 07:07:42 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/escript
Transport class uses now useBackwardEuler rather than the mysterious theta.

Revision 2325 - Directory Listing
Modified Thu Mar 19 05:32:13 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
tests for Lame equation added.

Revision 2323 - Directory Listing
Modified Thu Mar 19 04:23:32 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
test for Helmholtz added

Revision 2313 - Directory Listing
Modified Tue Mar 17 03:41:17 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
pyvisi is now rejecting to work under MPI with more than 1 processor. Tests for this configuration are dropped now.




Revision 2308 - Directory Listing
Modified Mon Mar 16 01:20:56 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
size_t may be 64 bits which is incompatible to MPI_INT. This problem is fixed by inserting a cast in Mesh_read.c. 
Moreover a fix has been added making sure that gmsh and triangle are executed on one processor only.




Revision 2305 - Directory Listing
Modified Mon Mar 16 00:19:41 2009 UTC (8 years, 9 months ago) by artak
Original Path: trunk/escript
verbose option is added

Revision 2304 - Directory Listing
Modified Fri Mar 13 03:17:24 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
a more robust way of doing whereZero and whereNotZero.

Revision 2303 - Directory Listing
Modified Fri Mar 13 01:34:36 2009 UTC (8 years, 9 months ago) by artak
Original Path: trunk/escript
This was the troublemaker for test failures on both MAC and Debian. I think numarry has a bug in memory managment. So we removed some numarray.array related lines in _givapp function and tests pass again.

Revision 2301 - Directory Listing
Modified Thu Mar 12 01:35:26 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
test for power law added

Revision 2300 - Directory Listing
Modified Wed Mar 11 08:17:57 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
a power law model. tests still need to be added and needs to be linked with an incompressible solver.

Revision 2288 - Directory Listing
Modified Tue Feb 24 06:11:48 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
a new idea for the sacling factor

Revision 2285 - Directory Listing
Modified Fri Feb 20 06:02:30 2009 UTC (8 years, 9 months ago) by jfenwick
Original Path: trunk/escript
Modified the escript python module.
If the escriptExitProfiling environment variable is set, then the 
contents of the status file from /proc will be copied to memescript.pid

This means we can log fun things like peak memory usage.

This only works on linux systems recent enough to have the status file.



Revision 2284 - Directory Listing
Modified Fri Feb 20 02:10:59 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/escript
soem small fixes.

Revision 2283 - Directory Listing
Modified Fri Feb 20 01:08:21 2009 UTC (8 years, 9 months ago) by jfenwick
Original Path: trunk/escript
doxygen doco now correctly reports global project revsion number.
link to epydoc is now via a relative URL (avoids the problem of nightly doxygen pointing at out of date release epydoc).

Revision 2282 - Directory Listing
Modified Thu Feb 19 06:30:19 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
setTaggedValueByName now throws if the tag name does not exist.
The documentation says this is what happens - now the code matches the doco.
This resolves issue 238

Revision 2279 - Directory Listing
Modified Tue Feb 17 10:51:12 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
mofification of the weighting factor

Revision 2278 - Directory Listing
Modified Tue Feb 17 07:39:16 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
for some reason my gcc version requires NL at the end of the source files.

Revision 2277 - Directory Listing
Modified Tue Feb 17 07:38:07 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
type fixed

Revision 2273 - Directory Listing
Modified Tue Feb 17 01:22:48 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Added compile flags to turn autolazy on and off.
These are for testing purposes only.


Revision 2272 - Directory Listing
Modified Mon Feb 16 23:40:03 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Stop icpc on savanna warning about ignoring namespaces.


Revision 2271 - Directory Listing
Modified Mon Feb 16 05:08:29 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Merging version 2269 to trunk


Revision 2267 - Directory Listing
Modified Thu Feb 12 06:18:45 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
weighting factor introduced.

Revision 2265 - Directory Listing
Modified Wed Feb 11 07:46:07 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
somehow the fix of the test did not make it into the repository.

Revision 2264 - Directory Listing
Modified Wed Feb 11 06:48:28 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
a new darcy flux solver.

Revision 2261 - Directory Listing
Modified Tue Feb 10 08:38:53 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
GMRES supports prconditioning from the right now.

Revision 2260 - Directory Listing
Modified Tue Feb 10 04:50:10 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
That should be the last of the copyWithMask related errors.



Revision 2259 - Directory Listing
Modified Tue Feb 10 01:49:44 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Fixes errors due to feeding scalars and vectors into the same call to maximum.


Revision 2256 - Directory Listing
Modified Mon Feb 9 06:20:32 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Throw an exception if AbstractDomain::MPIBarrier is called (This shouldn't happen).
Added Barrier to saveVTK.
Replaced some misused keywords.


Revision 2255 - Directory Listing
Modified Mon Feb 9 06:10:13 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
problem in maximum fixed.

Revision 2251 - Directory Listing
Modified Fri Feb 6 06:50:39 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
new compressible flow solver

Revision 2249 - Directory Listing
Modified Fri Feb 6 00:11:51 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Fixed some pathing issues.


Revision 2246 - Directory Listing
Modified Thu Feb 5 06:04:55 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Made some changes to the way copyWithMask works.


Revision 2245 - Directory Listing
Modified Wed Feb 4 06:27:59 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
renaming to make _GMRESm visibale

Revision 2242 - Directory Listing
Modified Wed Feb 4 05:04:20 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Development continues on unit test framework


Revision 2239 - Directory Listing
Modified Wed Feb 4 00:42:46 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Added pyvisi and c++ unit tests to build of utest.sh

Revision 2237 - Directory Listing
Modified Tue Feb 3 06:14:19 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/escript
better method to du clipping

Revision 2235 - Directory Listing
Modified Tue Feb 3 01:47:47 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Added support for generating non-scons test scripts

Revision 2231 - Directory Listing
Modified Fri Jan 30 05:16:05 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/escript
Modified scons files to compile c++ unit tests with the same options used to compile the libraries.


Revision 2210 - Directory Listing
Modified Tue Jan 13 03:49:47 2009 UTC (8 years, 11 months ago) by artak
Original Path: trunk/escript
First version of the mountains class.

Revision 2208 - Directory Listing
Modified Mon Jan 12 06:37:07 2009 UTC (8 years, 11 months ago) by gross
Original Path: trunk/escript
more work on the dary solver 



Revision 2204 - Directory Listing
Modified Fri Jan 9 01:33:39 2009 UTC (8 years, 11 months ago) by caltinay
Original Path: trunk/escript
Fixed a little doxygen typo in the hyperlink.


Revision 2200 - Directory Listing
Modified Thu Jan 8 23:55:40 2009 UTC (8 years, 11 months ago) by jfenwick
Original Path: trunk/escript
Fixed python string substitution in error messages for trace and transpose.
Added tests for invalid axis offsets for trace on the c++ side.

Revision 2199 - Directory Listing
Modified Thu Jan 8 06:10:52 2009 UTC (8 years, 11 months ago) by jfenwick
Original Path: trunk/escript
Misc fixes:
Added some svn:ignore properties for output files that were cluttering things up.

Lazy fixes:
Fixed shape calculations for TRACE and TRANSPOSE for rank>2.
Adjusted unit test accordingly.

As a Temporary change to DataC.cpp to test for lazy data in DataC's expanded check.
This is wrong but would only affect people using lazy data.
The proper fix will come when the numarray removal code moves over from the branch.

Made tensor product AUTOLAZY capable.
Fixed some bugs resolving tensor products (incorrect offsets in buffers).
Macro'd some stray couts.

- It appears that AUTOLAZY now passes all unit tests.
- It will not be _really_ safe for general use until I can add COW. 
- (Everything's better with COW)

Revision 2197 - Directory Listing
Modified Thu Jan 8 05:49:16 2009 UTC (8 years, 11 months ago) by gross
Original Path: trunk/escript
modifications to the way cosntraints are handeled in the Transport problem



Revision 2195 - Directory Listing
Modified Wed Jan 7 04:13:52 2009 UTC (8 years, 11 months ago) by jfenwick
Original Path: trunk/escript
Fixed a bug in lazy evaluation of Tensor Products.
Added / to end of boost path


Revision 2188 - Directory Listing
Modified Tue Dec 23 04:24:03 2008 UTC (8 years, 11 months ago) by caltinay
Original Path: trunk/escript
Implemented new utility function saveESD() which takes care of dumping the
given data objects with their domain and creates an ESD file containing the
required information. This obsoletes the necessity to use esdcreate for single
timestep datasets.


Revision 2182 - Directory Listing
Modified Thu Dec 18 03:30:17 2008 UTC (9 years ago) by caltinay
Original Path: trunk/escript
Fixed some more typos


Revision 2179 - Directory Listing
Modified Thu Dec 18 00:23:55 2008 UTC (9 years ago) by caltinay
Original Path: trunk/escript
Fixed compilation with boost 1.37 (namespace clash).


Revision 2177 - Directory Listing
Modified Wed Dec 17 23:51:23 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
used unused variable.
Added support for limiting the size of lazy expression trees.
500,000 seems a bit high

Revision 2171 - Directory Listing
Modified Wed Dec 17 08:21:29 2008 UTC (9 years ago) by phornby
Original Path: trunk/escript
Unitary minus applied to unsigned returns unsigned error fixed
lines 1124 & 1142. Probably not what was intended......

Revision 2170 - Directory Listing
Modified Wed Dec 17 06:16:43 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Another unit test fix


Revision 2169 - Directory Listing
Modified Wed Dec 17 03:08:58 2008 UTC (9 years ago) by caltinay
Original Path: trunk/escript
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 2).
All epydoc warnings for these files have been fixed.
This commit should be a no-op.


Revision 2167 - Directory Listing
Modified Tue Dec 16 23:31:05 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Adjust tests for changes to number of buffers required.
Prevent cpp unit test from failing.

Revision 2166 - Directory Listing
Modified Tue Dec 16 06:08:02 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Fixed a bug related to lazy trace

Revision 2158 - Directory Listing
Modified Mon Dec 15 07:17:47 2008 UTC (9 years ago) by caltinay
Original Path: trunk/escript
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 1).
This commit should be a no-op.


Revision 2157 - Directory Listing
Modified Mon Dec 15 06:05:58 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Some lazy fixes to the symmetric operation.

Revision 2156 - Directory Listing
Modified Mon Dec 15 05:09:02 2008 UTC (9 years ago) by gross
Original Path: trunk/escript
some modifications to the iterative solver to make them easier to use. 
There are also improved versions of the Darcy flux solver and the incompressible solver.



Revision 2154 - Directory Listing
Modified Mon Dec 15 01:50:56 2008 UTC (9 years ago) by trankine
Original Path: trunk/escript
* added include based on Joel's advice. Build now working on win32. unit tests not run yet...

Revision 2153 - Directory Listing
Modified Fri Dec 12 00:18:18 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Fixed a bug related to lazy tensor product.

Revision 2152 - Directory Listing
Modified Thu Dec 11 04:26:42 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Fixed some errors related to lazy processing of scalars.
AutoLazy passes more unit tests before failing.

Revision 2147 - Directory Listing
Modified Wed Dec 10 04:41:26 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Made some changes to c++ unit tests to accomodate AUTOLAZY.
whereZero and whereNonZero can now work with lazy data.
There are some double frees if AUTOLAZY is turned on so don't use it yet.

Revision 2146 - Directory Listing
Modified Wed Dec 10 02:59:46 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Replaced duplicate code in Data with macro calls.
Added AUTOLAZY parameter (defaults to off for now.)

Revision 2142 - Directory Listing
Modified Tue Dec 9 06:22:57 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Added showEscriptParams to output a list of available params.


Revision 2125 - Directory Listing
Modified Wed Dec 3 09:13:10 2008 UTC (9 years ago) by phornby
Original Path: trunk/escript
Just the usual signed/unsigned mismatch corrections. Should be harmless.
this checkin is to propagate the changes to other platforms for testing.

Revision 2123 - Directory Listing
Modified Wed Dec 3 03:26:02 2008 UTC (9 years ago) by gross
Original Path: trunk/escript
typo fixed

Revision 2108 - Directory Listing
Modified Fri Nov 28 05:09:23 2008 UTC (9 years ago) by gross
Original Path: trunk/escript
some minor changes to PCG and some extra suspicious characters.

Revision 2105 - Directory Listing
Modified Fri Nov 28 01:52:12 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Data::copySelf() now returns an object instead of a pointer.
Fixed a bug in copyFromArray relating to expanded data.

Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (9 years ago) by gross
Original Path: trunk/escript
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.




Revision 2098 - Directory Listing
Modified Tue Nov 25 12:04:36 2008 UTC (9 years ago) by phornby
Original Path: trunk/escript
Fix unsigned/signed comparison.

Revision 2097 - Directory Listing
Modified Tue Nov 25 12:03:29 2008 UTC (9 years ago) by phornby
Original Path: trunk/escript
moved the code

#ifndef __const
# if (defined __STDC__ && __STDC__) || defined __cplusplus
#  define __const	const
# else
#  define __const
# endif
#endif

from escript/src/system_dep.h to esysUtils/src/system_dep.h, just for blocktimer's sake.


Revision 2092 - Directory Listing
Modified Tue Nov 25 04:18:17 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Added macro to disable debug output from Lazy Data.

Revision 2089 - Directory Listing
Modified Mon Nov 24 06:07:29 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Resolve mantis issue 216.

Removed the asAbstractContinuousDomain(X) member which did not take cast 
failure into account.
Rewrote the few places where it was used.




Revision 2087 - Directory Listing
Modified Mon Nov 24 04:51:30 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Addressing mantis issue #221.
Interpolation.. and probeInterpolation.. now "work" for the NullDomain.
Work means throw a descriptive exception if you try to move into or out 
of the NullDomain.
The bad_cast exception related to this has been fixed.



Revision 2086 - Directory Listing
Modified Mon Nov 24 02:38:50 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Added checks in C_GeneralTensorProduct (Data:: and Delayed forms) as 
well as the DataAbstract Constructor to prevent Objects with Rank>4 
being created.

Moved the relevant #define into systemdep.

Removed some comments.


Revision 2085 - Directory Listing
Modified Mon Nov 24 00:45:48 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Added c++ unit tests for new operations.
Added resolve to some operations in Data


Revision 2084 - Directory Listing
Modified Fri Nov 21 05:20:42 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/escript
Fixed a warning in cpp unit tests under dodebug
Pointed the url for python doco at shake200 rather than iservo.
Added support for trace and transpose to LazyData.
Fixed bug in trace to initialise running totals.

Revision 2082 - Directory Listing
Modified Fri Nov 21 01:46:05 2008 UTC (9 years ago) by caltinay
Original Path: trunk/escript
Removed unused variable.


Revision 2081 - Directory Listing
Modified Fri Nov 21 01:28:31 2008 UTC (9 years ago) by caltinay
Original Path: trunk/escript
escript/Data: Another fix for parallel var initialization. Also, the (error) return value of MPI_Gather was not used. I applied the same 'hack' as in other places in the file, namely declaring the variable beforehand but still ignoring the return value :-/


Revision 2078 - Directory Listing
Modified Thu Nov 20 16:10:10 2008 UTC (9 years ago) by phornby
Original Path: trunk/escript
Two changes.

1. Move blocktimer from escript to esysUtils.
2. Make it possible to link to paso as a DLL or .so.

Should have no effect on 'nix's

In respect of 1., blocktimer had begun to spring up everywhere, so
for the moment I thought it best to move it to the only other library that
pops up all over the place.

In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast
option, which does aggressive multi-file optimisations. Even in its current form, it either
vectorises or parallelises  hundreds more loops in the esys system than appear in the pragmas.

In achieving 2. I have not been too delicate in adding

PASO_DLL_API

declarations to the .h files in paso/src. Only toward the end of the process of
the conversion, when the number of linker errors dropped below 20, say, did I choosy about what
functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines
declared as external functions symbols that are in fact internal to the paso DLL. 
Why is this an issue?  It prevents the intelc compiler from getting aggressive on the paso module.
With pain there is sometimes gain. At least all the DLL rules in windows give good
(non-microsoft) compiler writers a chance to really shine.

So, if you should see a PASO_DLL_API on a function in a paso header file,
and think to yourself, "that function is only called in paso, why export it?", then feel free to
delete the PASO_DLL_API export declaration.

Here's hoping for no breakage.....

Revision 2076 - Directory Listing
Modified Thu Nov 20 12:34:17 2008 UTC (9 years ago) by phornby
Original Path: trunk/escript

I may get into trouble for this.
boost-python 1.34 does have a docstring_options class,
but does not have a 3 argument constructor for
it. So the test has been modified to 


#if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)

If you wish to make things more delicate, one can define a 2 argument construction
of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly.

Hope that this has not broken anything for anyone else. The SVN logs suggest this is a
little fragile.....

Also, please be aware that much of our chemistry interface code, that we wish to use with
escript, makes extensive use of boost python.
Having two different boost versions mucking with the python interpreter sounds
like a really bad idea, I'm sure you'll agree.
The problem is that it is not a simple task for us to build new versions of boost-python
on all our platforms. Consequently, it would be nice to be informed when you guys
intend to upgrade a support library of this nature so that we can plan and allocate
resources to keep up.

Cheers.



Revision 2066 - Directory Listing
Modified Thu Nov 20 05:31:33 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Fixed Data::toString to look at the amount of data actually stored rather than the number of points in the domain.

Added support for GeneralTensorProduct to LazyData

Revision 2064 - Directory Listing
Modified Thu Nov 20 04:06:34 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
docstring_options was added in boost 1.34 - macro'd it out if you are 
compiling earlier than that.


Revision 2063 - Directory Listing
Modified Wed Nov 19 04:59:43 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
- Removed some deprecated directories.
- Removed the pythfilter script for converting python doco into c++ stubs. The license was unspecified and we don't use it.
- Suppressed long long warnings on gcc (the Mac complained).
- svn:ignored Mac library suffixes in lib directory

Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

Revision 2053 - Directory Listing
Modified Mon Nov 17 11:24:40 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Fix the test for erf() under intelc on windows to something more informative.

Revision 2051 - Directory Listing
Modified Mon Nov 17 09:24:02 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Now add the erf() test back for windows under the intelc compiler.



Revision 2050 - Directory Listing
Modified Mon Nov 17 08:59:57 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
OK, I have to include this file in the experiment
to use the intelc math library on windows.



Revision 2049 - Directory Listing
Modified Mon Nov 17 08:54:33 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
A little refinement of what to leave out of UnaryFuncs.h
if using the intelc compiler on windows.



Revision 2048 - Directory Listing
Modified Mon Nov 17 08:46:00 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Experimental commit to move the code to a windows box
on the other side of a firewall. Purpose: add support for the
imploved intelc math library on windows.



Revision 2041 - Directory Listing
Modified Sat Nov 15 12:45:15 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
ESYS_STATIC_LIB no longer needs to be defined in SConscript files.

Revision 2037 - Directory Listing
Modified Thu Nov 13 06:17:12 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Fixed some warnings in the unit tests.
Added support for symmetric and nonsymmetric operations on LazyData.

Revision 2032 - Directory Listing
Modified Wed Nov 12 08:11:19 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Missed an extra additional CPPDEFINES for the py_wrapper_local_env.



Revision 2031 - Directory Listing
Modified Wed Nov 12 08:02:33 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Need finer control than INTERFACE_STATIC_LIB could exert. Now there is a
XXX_STATIC_LIB for each lib.



Revision 2030 - Directory Listing
Modified Wed Nov 12 07:34:08 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Fix the undef'fing of _DLL_API in windows case.



Revision 2029 - Directory Listing
Modified Wed Nov 12 07:27:05 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Test a more elegant way of handling XXX_DLL_API macros.



Revision 2027 - Directory Listing
Modified Tue Nov 11 02:52:24 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Ensure ESCRIPT_EXPORTS is defined only while compiling escript on windows.
A similar comment applies to FINLEY_EXPORTS.

SConstruct:
Fixed a comment.
reformatted the Export() call, and added IS_WINDOWS_PLATFORM to the exports.

Revision 2021 - Directory Listing
Modified Mon Nov 10 14:07:49 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Use the NO_ARG trick on the PROC_OP macro expansions.



Revision 2019 - Directory Listing
Modified Mon Nov 10 13:49:00 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Yet another concerted effort to handle missing macro arguments
in a portable way.



Revision 2018 - Directory Listing
Modified Mon Nov 10 13:31:43 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Only import mathimf.h on win32 with intelc. Allow others to use the
standard math.h

change the #ifndef const -> #ifndef __const (oops!!)



Revision 2008 - Directory Listing
Modified Mon Nov 10 08:59:14 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Signed/unsigned comparisons eliminated (just loop variables, easy fix).

Revision 2007 - Directory Listing
Modified Mon Nov 10 06:34:11 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Added a private operator= to Taipan to prevent people from copying trying to copy instances.
Not that we have any of that.... but if someone ever tries, we'll be ready for them.

I have come to the conclusion that -Weffc++ is not usable for us. Its output is too noisy complaining about classes which we do not control.

Revision 2005 - Directory Listing
Modified Mon Nov 10 01:21:39 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Bringing all changes across from schroedinger.
(Note this does not mean development is done, just that it will happen
on the trunk for now).
If anyone notices any problems please contact me.



Revision 1981 - Directory Listing
Modified Thu Nov 6 05:27:33 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
More warning removal.


Revision 1977 - Directory Listing
Modified Thu Nov 6 03:54:35 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
More warning removal.

Revision 1962 - Directory Listing
Modified Tue Nov 4 07:17:31 2008 UTC (9 years, 1 month ago) by gross
Original Path: trunk/escript
there is an offet missing when copy data to a data point.



Revision 1956 - Directory Listing
Modified Mon Nov 3 05:08:42 2008 UTC (9 years, 1 month ago) by gross
Original Path: trunk/escript
bug fixed.

Revision 1953 - Directory Listing
Modified Thu Oct 30 07:01:11 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
removed one signed/unsigned value comparison. The remaining one at line 863 is far more difficult to deal with.

Revision 1952 - Directory Listing
Modified Thu Oct 30 06:16:00 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
Fixed /* in a comment.
The rank of a datapoint is now an unsigned int.


Revision 1946 - Directory Listing
Modified Wed Oct 29 05:48:53 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/escript
A cleanup of some of the problems I found doing a Wall compile.

Removed some commented out lines.
Swapped some member initialisers.
Removed virtual qualifiers from some methods in FunctionSpace.
Fixed some unused or (possibly) uninitialised variables.



Revision 1921 - Directory Listing
Modified Thu Oct 23 11:32:24 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
Jump through hoops to meet the OPENMP 2.5 restrictions on loop variables.
It's all ready for OPENMP 3.0 improvments, and should compile cleanly on other platforms.



Revision 1918 - Directory Listing
Modified Thu Oct 23 09:14:13 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/escript
fix a signed and unsigned integer comparison. As your meshes get larger, this type of error will bite.

Revision 1897 - Directory Listing
Modified Mon Oct 20 00:32:30 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Modified Data::toString() so it doesn't throw on DataEmpty.
Added setEscriptParamInt and getEscriptParamInt as free functions.
At the moment all they do is allow you to set the param TOO_MANY_LINES.
This is used to determine when printing a Data object will show you the 
points and when it will print a summary.

I've set the default value back to 80 lines.
If you need to see more lines use (in python):

setEscriptParamInt("TOO_MANY_LINES",80000)



Revision 1896 - Directory Listing
Modified Sun Oct 19 23:16:21 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
small fixes.

Revision 1887 - Directory Listing
Modified Wed Oct 15 03:26:25 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
Fixed two typos that stopped the test suite from running.

Also, gcc 4.3.2 issued several warnings not seen before:
ignoring the return value of fscanf and using the wrong format
with printf.


Revision 1878 - Directory Listing
Modified Tue Oct 14 03:39:13 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
new version of JacobiFree Newton GMRES + test added.

Revision 1877 - Directory Listing
Modified Tue Oct 14 02:58:39 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.

mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.

Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.

A more general solution might be possible in the future.


Revision 1874 - Directory Listing
Modified Mon Oct 13 05:15:55 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
num_equations -> numEquations


Revision 1873 - Directory Listing
Modified Mon Oct 13 04:32:22 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Fixed a compile error under MPI.
Cleaned up a comment.


Revision 1872 - Directory Listing
Modified Mon Oct 13 00:18:55 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Closing the moreshared branch


Revision 1870 - Directory Listing
Modified Thu Oct 9 08:49:53 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
a bug in the nc test fixed (hopefully.)

Revision 1861 - Directory Listing
Modified Wed Oct 8 04:20:07 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
minres test are switched on

Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
first version of testing for transport solver.

Revision 1857 - Directory Listing
Modified Tue Oct 7 23:58:44 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Updated doco to describe the behaviour of inf, sup and Lsup for cases 
where none of the tags in use in the domain have values.

It confused me when I was testing.



Revision 1856 - Directory Listing
Modified Tue Oct 7 07:10:47 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
The NC dump tests work now with MPI.
In fact the old test did not exactly what it supposed to



Revision 1855 - Directory Listing
Modified Tue Oct 7 05:25:30 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Modified Data::copyWithMask to have a less cryptic implementation.


Revision 1847 - Directory Listing
Modified Fri Oct 3 06:45:34 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/escript
OK, these get the blahcpp.so names correct now.



Revision 1846 - Directory Listing
Modified Fri Oct 3 06:42:35 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
bug fixed.

Revision 1845 - Directory Listing
Modified Fri Oct 3 05:23:47 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
some naming problem for the installation of escriptcpp and finleycpp. Apparently this came is trough some mofifications in windows

Revision 1841 - Directory Listing
Modified Fri Oct 3 03:57:52 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/escript
modification on LinearPDE class and a first version of Transport class

Revision 1840 - Directory Listing
Modified Fri Oct 3 03:16:11 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/escript
These now install the correct .pyd files on windows.

Revision 1838 - Directory Listing
Modified Fri Oct 3 02:05:01 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/escript
add 4 missing  ESCRIPT_DLL_API that prevented linking.

Revision 1837 - Directory Listing
Modified Fri Oct 3 02:03:07 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/escript
Just getting run_tests going. I now recall that windows python will look for a .pyd
and not a .dll. So somehow we must install the python wrapper .dlls as a .pyds
I'll get to that later.

Revision 1835 - Directory Listing
Modified Thu Oct 2 10:18:03 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/escript
There is no unistd.h on windows, as the name would imply.
I assume it is included for gethostname only.

Revision 1834 - Directory Listing
Modified Thu Oct 2 09:48:45 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/escript
Remove a signed/unsigned comparison

Revision 1833 - Directory Listing
Modified Thu Oct 2 09:47:24 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/escript
One cannot give a static function external linkage
(eigenvalues_and_eigenvectors and swapaxes).
I'm not even sure the external linkage is needed for inline functions.

Revision 1827 - Directory Listing
Modified Thu Oct 2 04:28:07 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
MPI parallelized dump/load for Constant and Tagged data.
run_escriptOnFinley.py runs hybrid MPI/OpenMP.


Revision 1819 - Directory Listing
Modified Tue Sep 30 05:58:06 2008 UTC (9 years, 2 months ago) by artak
Original Path: trunk/escript
Firs version of symmetric Gauss-Seidel preconditioner with coloring

Revision 1817 - Directory Listing
Modified Tue Sep 30 04:03:40 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
Install runmodel.py into bin
Remove obsolete script esysXML.py


Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
Copyright updated in all files


Revision 1809 - Directory Listing
Modified Thu Sep 25 06:43:44 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
Copyright updated in all python files


Revision 1808 - Directory Listing
Modified Thu Sep 25 03:14:56 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Removed some commented out lines.
Modified DataExpanded to not throw when creating objects with zero 
samples.
Modified toString() to report "(data contains no samples)" rather than 
printing a blank line.
Modified DataExpanded::dump() and load so that they do not attempt so 
save/load the ids and data fields if the data object contains no 
samples.




Revision 1806 - Directory Listing
Modified Thu Sep 25 00:36:10 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
Cleaned up use of gethostname


Revision 1805 - Directory Listing
Modified Wed Sep 24 23:39:00 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/escript
Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.


Revision 1803 - Directory Listing
Modified Wed Sep 24 06:20:29 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/escript
All about making DataEmpty instances throw.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Exposed getDim from AbstractDomain to python to fix bug.

Added isEmpty member to DataAbstract to allow it to throw is queries are 
made about a DataEmpty instance.


Added exceptions to DataAbstract, DataEmpty and Data to prevent calls 
being made against DataEmpty objects.
The following still work as expected on DataEmpty instances

copy, getDomain, getFunctionSpace, isEmpty, isExpanded, isProtected, 
isTagged, setprotection.

You can also call interpolate, however it should throw if you try to 
change FunctionSpaces.



Revision 1802 - Directory Listing
Modified Tue Sep 23 01:03:29 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/escript
Added canTag methods to FunctionSpace and AbstractDomain (and its 
offspring).
This checks to see if the domain supports tags for the given type of 
function space.

Constructors for DataTagged now throw exceptions if you attempt to make 
a DataTagged with a FunctionSpace which does not support tags.
To allow the default constructor to work, NullDomain has a single 
functioncode which "supports" tagging.

Fixed a bug in DataTagged::toString and DataTypes::pointToString.

Added FunctionSpace::getListOfTagsSTL.

algorithm(DataTagged, BinaryFunction) in DataAlgorithm now only 
processes tags known to be in use.
This fixes mantis issue #0000186.

Added comment to Data.h intro warning about holding references if the 
underlying DataAbstract changes.

_python_ unit tests have been updated to test TaggedData with invalid 
FunctionSpaces and to give the correct answers to Lsup etc.



Revision 1801 - Directory Listing
Modified Fri Sep 19 01:37:09 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/escript
Fixed serialization of I/O for MPI...code didn't compile without MPI


Revision 1800 - Directory Listing
Modified Thu Sep 18 05:28:20 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/escript
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().


Revision 1799 - Directory Listing
Modified Wed Sep 17 06:33:18 2008 UTC (9 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Added Data::copySelf() [Note: this is exposed as copy() in python].
This method returns a pointer to a deep copy of the target.
There are c++ tests but no python tests for this yet.

All DataAbstracts now have a deepCopy() which simplifies the 
implementation of the compy methods.



Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (9 years, 3 months ago) by jfenwick
Original Path: trunk/escript
Merged noarrayview branch onto trunk.



Revision 1788 - Directory Listing
Modified Mon Sep 15 02:20:20 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/escript
levelset in the way laurent did it.

Revision 1787 - Directory Listing
Modified Mon Sep 15 01:36:34 2008 UTC (9 years, 3 months ago) by artak
Original Path: trunk/escript
MINRES solver is added to escript. Additional 16 tests are added to run_simplesolve for MINRES and TFQMR solvers

Revision 1771 - Directory Listing
Modified Mon Sep 8 22:47:55 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/escript
Removed failing test until we fix a bug.
Fixed several compiler warnings.


Revision 1757 - Directory Listing
Modified Mon Sep 8 02:28:38 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/escript
no ifdef _OPENMP required

Revision 1748 - Directory Listing
Modified Wed Sep 3 06:10:39 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/escript
MPI parallelism for Data().dump and load.  Use multiple NetCDF
files, one file per MPI process


Revision 1737 - Directory Listing
Modified Fri Aug 29 03:01:29 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/escript
the MaskFromBoundaryTag function didn't make much sense. The argument function_space is replaced by domain.



Revision 1719 - Directory Listing
Modified Thu Aug 21 06:24:29 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/escript
robust function to normalize data object added

Revision 1718 - Directory Listing
Modified Thu Aug 21 05:50:11 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/escript
method returning reference id added to FunctionSpace class

Revision 1717 - Directory Listing
Modified Thu Aug 21 05:24:35 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/escript
function to calculate value closest to given value added

Revision 1716 - Directory Listing
Modified Thu Aug 21 05:03:49 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/escript
getListOfTags method added to FunctionSpace class

Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/escript
Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.


Revision 1703 - Directory Listing
Modified Thu Aug 14 05:34:25 2008 UTC (9 years, 4 months ago) by artak
Original Path: trunk/escript
TFQMR solver is added to PASO solver. It is not parallelised yet.

Revision 1695 - Directory Listing
Modified Fri Aug 8 04:28:28 2008 UTC (9 years, 4 months ago) by artak
Original Path: trunk/escript
test_NoPDE_vector_variable is changed to avoid 0/0 division

Revision 1693 - Directory Listing
Modified Fri Aug 8 04:22:58 2008 UTC (9 years, 4 months ago) by jfenwick
Original Path: trunk/escript
Modified toString() on Data objects.
str(x) or print x will now print a summary of the data rather than all 
the points if the output would take more than 80 lines.



Revision 1679 - Directory Listing
Modified Wed Jul 30 00:09:12 2008 UTC (9 years, 4 months ago) by artak
Original Path: trunk/escript
now convection works for other solvers as well, besides PCG.

Revision 1673 - Directory Listing
Modified Thu Jul 24 22:28:50 2008 UTC (9 years, 4 months ago) by gross
Original Path: trunk/escript
more algorithms for level set

Revision 1664 - Directory Listing
Modified Tue Jul 22 03:41:38 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/escript
Install() on Mac OS was naming shared libs file.dylib...not OK for our
libraries for python calling C++ (escriptcpp.so and finleycpp.so).
This is because python's dlopen() calls only look for .so files.


Revision 1662 - Directory Listing
Modified Tue Jul 22 01:49:21 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/escript
Ran a simple Escript program on Mac OS Darwin. Still much to do.


Revision 1661 - Directory Listing
Modified Mon Jul 21 22:08:27 2008 UTC (9 years, 4 months ago) by gross
Original Path: trunk/escript
some improvements on level set

Revision 1659 - Directory Listing
Modified Fri Jul 18 02:28:13 2008 UTC (9 years, 5 months ago) by gross
Original Path: trunk/escript
some first version of a robust level set

Revision 1649 - Directory Listing
Modified Tue Jul 15 08:41:02 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/escript
Make operator=() on exception non-virtual. Should silence the Altix compiler.
However, if an exception is cast to another parent type, and
operator=() is called when the exception so cast is an l-value in the assignment,
an "incomplete" assignment will occur, copying only the parent class members of the 
l-value in the assignmnet.

Revision 1644 - Directory Listing
Modified Tue Jul 15 05:25:32 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/escript
tmp_str was unused var on windows.

Revision 1639 - Directory Listing
Modified Mon Jul 14 08:55:25 2008 UTC (9 years, 5 months ago) by gross
Original Path: trunk/escript


Revision 1637 - Directory Listing
Modified Mon Jul 14 05:34:59 2008 UTC (9 years, 5 months ago) by ksteube
Original Path: trunk/escript
Resolved some compiler warnings
Changed blocktimer to not use strdup, intead malloc and strcpy


Revision 1635 - Directory Listing
Modified Sat Jul 12 10:00:50 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/escript
Last commit hung. Trying to recover. Also, remove excessive extern C {} I introduced



Revision 1634 - Directory Listing
Modified Sat Jul 12 09:08:33 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/escript
linux_gcc_eg_options.py:
remove the std99 option, it is no longer needed as the code compiles without
C 1999 extension (need for these extensions elinminated in windows port).
Turn on all warnings except unknown pragmas. Should catch a lot of stuff.

SConstruct:
Impassioned plea

system_dep.h:
Add the standard incantation for dealing with const declarations
in C code called from C and C++

blocktimer:
Get the calling interface right for C code called from C and C++
and use __const as defined in system_dep.h
(Should be re-factored into compiler_dep.h file).

MeshAdapterFactory.cpp:
Since we have (effectively) no control over netCDF policy,
cast const char *'s to char *'s



Revision 1631 - Directory Listing
Modified Sat Jul 12 07:16:39 2008 UTC (9 years, 5 months ago) by trankine
Original Path: trunk/escript
eliminate unused var argument of catch statement.

Revision 1628 - Directory Listing
Modified Fri Jul 11 13:12:46 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/escript

Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.

You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.

Here is a list of the conflicts and their resolution at this
point in time.


=================================================================================
(LLWS == looks like white space).

finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================

This currently passes tests on linux (debian), but is not checked on windows or Altix yet.

This checkin is to make a trunk I can check out for windows to do tests on it.

Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.

May the God of doughnuts have mercy on my soul.



Revision 1625 - Directory Listing
Modified Thu Jul 10 23:55:31 2008 UTC (9 years, 5 months ago) by gross
Original Path: trunk/escript
interpolate accepts now float and numarray as argument

Revision 1620 - Directory Listing
Modified Fri Jun 27 02:30:18 2008 UTC (9 years, 5 months ago) by ksteube
Original Path: trunk/escript
Included more MPI configuration options on Savanna


Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/escript
Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering


Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/escript
scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.


Revision 1562 - Directory Listing
Modified Wed May 21 13:04:40 2008 UTC (9 years, 7 months ago) by gross
Original Path: trunk/escript
The algebraic upwinding with MPI. The case of boundary constraint needs still some attention. 



Revision 1561 - Directory Listing
Modified Wed May 21 06:58:52 2008 UTC (9 years, 7 months ago) by ksteube
Original Path: trunk/escript
Added python method printParallelThreadCounts() to tell how many MPI CPUs and OpenMP threads we are using (for testing hybrid runs)


Revision 1559 - Directory Listing
Modified Wed May 21 04:27:15 2008 UTC (9 years, 7 months ago) by ksteube
Original Path: trunk/escript
Compiles and runs on Savanna (hostname service0)


Revision 1557 - Directory Listing
Modified Mon May 19 04:44:27 2008 UTC (9 years, 7 months ago) by artak
Original Path: trunk/escript
some changes to ArithmenticTuple class

Revision 1554 - Directory Listing
Modified Fri May 9 02:50:49 2008 UTC (9 years, 7 months ago) by artak
Original Path: trunk/escript
minor changes

Revision 1552 - Directory Listing
Modified Thu May 8 08:52:41 2008 UTC (9 years, 7 months ago) by gross
Original Path: trunk/escript
some changes to make the implementatiopn of a upwind MPI version easier

Revision 1551 - Directory Listing
Modified Wed May 7 23:11:44 2008 UTC (9 years, 7 months ago) by artak
Original Path: trunk/escript
RILU canged to ILU0 to fix today's test failure

Revision 1550 - Directory Listing
Modified Wed May 7 02:22:57 2008 UTC (9 years, 7 months ago) by artak
Original Path: trunk/escript
coupled method is added, but it's still not working

Revision 1542 - Directory Listing
Modified Wed Apr 30 03:40:15 2008 UTC (9 years, 7 months ago) by artak
Original Path: trunk/escript
#s and #e replaced by %s and %e 

Revision 1541 - Directory Listing
Modified Wed Apr 30 02:05:29 2008 UTC (9 years, 7 months ago) by ksteube
Original Path: trunk/escript
Changed #s to %s in print


Revision 1527 - Directory Listing
Modified Tue Apr 29 00:52:01 2008 UTC (9 years, 7 months ago) by ksteube
Original Path: trunk/escript
Changed from printing doubles with %s to %e


Revision 1519 - Directory Listing
Modified Tue Apr 22 03:45:36 2008 UTC (9 years, 7 months ago) by artak
Original Path: trunk/escript
Initial version of NewtonGMRES solver. Still to do: 1. The atol and rtol define globally. 2. Decide about N 

Revision 1517 - Directory Listing
Modified Fri Apr 18 02:36:37 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
stopping criteriums are combined for GMRES,MINRES and TFQMR in stoppingcriterium2

Revision 1514 - Directory Listing
Modified Wed Apr 16 00:15:44 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
default input parameter iter_restart for GMRES is set to 20

Revision 1513 - Directory Listing
Modified Tue Apr 15 08:47:57 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/escript
pragma ivdep removed. icc produced wrong code.

Revision 1489 - Directory Listing
Modified Mon Apr 14 04:29:30 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
Initial version of TFQMR method

Revision 1488 - Directory Listing
Modified Fri Apr 11 00:22:31 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
restart parameter is changed in GMRES(m)

Revision 1487 - Directory Listing
Modified Thu Apr 10 05:28:01 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/escript
reordering when reading Netcfd files added.

Revision 1486 - Directory Listing
Modified Thu Apr 10 00:10:50 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
minor

Revision 1484 - Directory Listing
Modified Wed Apr 9 03:25:53 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
minor: PCG set as default solver

Revision 1482 - Directory Listing
Modified Wed Apr 9 02:29:47 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
inital x taken into account in MINRES algorithm

Revision 1481 - Directory Listing
Modified Wed Apr 9 00:45:47 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
initial version of MINRES algorithm

Revision 1476 - Directory Listing
Modified Mon Apr 7 23:38:50 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/escript
Jacobian-free Newton method added to Paso

Revision 1475 - Directory Listing
Modified Mon Apr 7 05:13:21 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript
Initial version of GMRES with restart

Revision 1473 - Directory Listing
Modified Fri Apr 4 07:49:18 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/escript
initial checkin for level set

Revision 1470 - Directory Listing
Modified Thu Apr 3 05:17:54 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/escript
bug in pressure definition fixed

Revision 1469 - Directory Listing
Modified Thu Apr 3 05:16:56 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/escript
additional stopping criterion added

Revision 1468 - Directory Listing
Modified Thu Apr 3 04:14:48 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/escript
test for GMRES added

Revision 1467 - Directory Listing
Modified Wed Apr 2 08:10:37 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/escript
a bit of reengineering.

Revision 1465 - Directory Listing
Modified Wed Apr 2 03:28:25 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/escript


Revision 1455 - Directory Listing
Modified Thu Feb 28 17:19:44 2008 UTC (9 years, 9 months ago) by phornby
Original Path: trunk/escript
Merge of branches/windows_from_1431_trunk.

Revamp of the exception system.
Fix unused vars and signed/unsigned comparisons.
defined a macro THROW(ARG) in the system_dep.h's to
deal with the expectations of declarations on different architectures.

Details in the logs of branches/windows_from_1431_trunk.

pre-merge snapshot of the trunk in tags/trunk_at_1452



Revision 1431 - Directory Listing
Modified Wed Feb 27 09:52:25 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk/escript
This trunk now compiles and links under windows.
It passes the FunctionSpace.__str__() test 50000 times on windows.
It fails scons run_tests and scons_py_tests as it always did, but I have an idea why.

Please remember to add the appropriate dll linkage info to declarations that are to be visible outside a .so or .dll. Terry (BTW, PGH here) spent a lot of hacks clearing out blocktimer from the rest of the code when these 5 or 6 lines would have done the trick.

Revision 1430 - Directory Listing
Modified Wed Feb 27 09:07:19 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk/escript
Get the windows dll linkage right fo C_TensorBinaryOperation

Revision 1429 - Directory Listing
Modified Wed Feb 27 08:53:20 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk/escript
"and" and "or" are not C or C++ boolean operations.

Revision 1428 - Directory Listing
Modified Wed Feb 27 08:07:11 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk/escript
Merge changes from windows port branch to test build on *nix not broken.

Revision 1426 - Directory Listing
Modified Wed Feb 27 06:12:15 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk/escript
Merge the changes to these few files with the windows port branch to test just these changes under linux and altix.

Revision 1423 - Directory Listing
Modified Wed Feb 27 04:28:48 2008 UTC (9 years, 9 months ago) by gross
Original Path: trunk/escript
interpoilation inserted

Revision 1417 - Directory Listing
Modified Mon Feb 25 04:45:48 2008 UTC (9 years, 9 months ago) by gross
Original Path: trunk/escript
some more work on the transport solver.

Revision 1414 - Directory Listing
Modified Thu Feb 14 10:01:43 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/escript
a first verion of a Stokes solver

Revision 1410 - Directory Listing
Modified Thu Feb 7 04:24:00 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/escript
a new version of the algebric upwinding a. flux limiter

Revision 1409 - Directory Listing
Modified Wed Feb 6 22:44:28 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/escript
getTagNumber called the wrong corresponding FunctionSpace method. Results were wrong for number of data points per sample >1.

Revision 1407 - Directory Listing
Modified Mon Feb 4 06:45:48 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/escript
new upwinding algorithm (still fails)

Revision 1400 - Directory Listing
Modified Thu Jan 24 06:04:31 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/escript
better test example for upwinding added

Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (9 years, 11 months ago) by trankine
Original Path: trunk/escript
And get the *(&(*&(* name right

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (9 years, 11 months ago) by trankine
Original Path: temp/escript
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (9 years, 11 months ago) by phornby
Original Path: temp_trunk_copy/escript
Make a temp copy of the trunk before checking in the windows changes



Revision 1376 - Directory Listing
Modified Wed Jan 9 01:38:18 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/escript
inserted sys.exit(1) into the tests so scons can detect the failure of the test. 
A similar statement has been removed from an earlier as it produces problems on 64bit Linux. Previously exit(0) was called in case of success but now this is not done in order to avoid a fatal end of the program. in the case of an error in the test there could be a fatal error so but I guess that this not really a problem.

PS: the fact that signal 0 was returned even for the case of an error lead to the illusion that all tests have been completed successfully.



Revision 1374 - Directory Listing
Modified Tue Jan 8 09:37:55 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/escript
some changes to get things going on the cognac.ivec.org.

Revision 1370 - Directory Listing
Modified Wed Jan 2 09:21:43 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/escript
explicit upwinding scheme added.

Revision 1367 - Directory Listing
Modified Wed Dec 19 02:45:07 2007 UTC (10 years ago) by gross
Original Path: trunk/escript
finley can now assemble a transport problem.

Revision 1364 - Directory Listing
Modified Mon Dec 17 07:22:45 2007 UTC (10 years ago) by gross
Original Path: trunk/escript
finley interface to paso's transport solver added.

Revision 1361 - Directory Listing
Modified Fri Dec 14 09:26:51 2007 UTC (10 years ago) by gross
Original Path: trunk/escript
first steps towards a flux controlled transport solver.

Revision 1358 - Directory Listing
Modified Wed Dec 5 03:41:06 2007 UTC (10 years ago) by gross
Original Path: trunk/escript
setTaggedValue works now for expanded data.

Revision 1357 - Directory Listing
Modified Thu Nov 29 08:39:32 2007 UTC (10 years ago) by gross
Original Path: trunk/escript
interplote function returns now argument if it has requested function space

Revision 1355 - Directory Listing
Modified Thu Nov 29 00:53:31 2007 UTC (10 years ago) by ksteube
Original Path: trunk/escript
Test didn't compile on Windows due to lack of cast to double


Revision 1353 - Directory Listing
Modified Thu Nov 22 06:05:35 2007 UTC (10 years ago) by matt
Original Path: trunk/escript
Reversed the removal of blocktimer code. This needs to be fixed properly for
the Windows stuff to work.



Revision 1351 - Directory Listing
Modified Thu Nov 22 01:54:26 2007 UTC (10 years ago) by matt
Original Path: trunk/escript
Removed blocktimer code from gradOn().


Revision 1350 - Directory Listing
Modified Thu Nov 22 01:17:20 2007 UTC (10 years ago) by matt
Original Path: trunk/escript
Disambiguation of more template argument parameters so that it compiles under Windows.


Revision 1349 - Directory Listing
Modified Wed Nov 21 06:38:08 2007 UTC (10 years ago) by matt
Original Path: trunk/escript
Disambiguation of several template argument parameters so that it compiles under Windows.


Revision 1347 - Directory Listing
Modified Fri Nov 16 05:37:07 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk/escript
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.


Revision 1334 - Directory Listing
Modified Thu Oct 25 05:08:54 2007 UTC (10 years, 1 month ago) by matt
Original Path: trunk/escript
Initial rewrite of escript unary operations. The rewritten operations are now single-pass.


Revision 1332 - Directory Listing
Modified Tue Oct 23 03:28:51 2007 UTC (10 years, 1 month ago) by matt
Original Path: trunk/escript
Pow now uses the new binary function interface of C_TensorBinaryOperation.


Revision 1331 - Directory Listing
Modified Tue Oct 23 00:42:15 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk/escript
ArithmeticTuple added. It is useful for certain applications of PCG

Revision 1330 - Directory Listing
Modified Mon Oct 22 04:54:49 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk/escript
more flexible stopping criterium for the PCG

Revision 1328 - Directory Listing
Modified Mon Oct 15 03:23:15 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk/escript
Fixed bug in power operation.


Revision 1327 - Directory Listing
Modified Fri Oct 12 07:10:40 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk/escript
Initial rewrite of binary escript operations.



Revision 1325 - Directory Listing
Modified Mon Oct 1 06:28:24 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk/escript
DataArray has been removed as it is no longer used. Unit tests have been
updated accordingly with substitute constructs. Any files pertaining to
DataArray have been removed.



Revision 1323 - Directory Listing
Modified Thu Sep 27 06:20:29 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk/escript
Minor inconsistency.


Revision 1319 - Directory Listing
Modified Thu Sep 27 00:27:51 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk/escript
DataArray is no longer needed. However, the unit tests still require it.


Revision 1314 - Directory Listing
Modified Tue Sep 25 01:46:27 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/escript
Copied a couple more files from MPI branch to trunk


Revision 1313 - Directory Listing
Modified Tue Sep 25 01:44:26 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/escript
Copied a handful of files from trunk-mpi-branch into trunk


Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/escript
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.


Revision 1310 - Directory Listing
Modified Mon Sep 24 04:00:47 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/escript
A few additions to make trunk match trunk-mpi-branch


Revision 1250 - Directory Listing
Modified Thu Aug 16 02:54:42 2007 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk/escript
Minor repairs to scons files


Revision 1247 - Directory Listing
Modified Tue Aug 14 01:29:20 2007 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk/escript
New python method getVersion() which returns the Subversion revision
from which escript was compiled


Revision 1246 - Directory Listing
Modified Mon Aug 13 22:09:00 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/escript
Add the esys and lib directories to the repository.
Remove the IS_WINDOWS_PLATFORM from the SConscripts, and
do the logic once in SConstruct.
SConstruct now includes example options files if the hostname_options file is not present. 
This needs some more work for the altix.
The tests now depend upon the build target. This is important it seems, as there appears to be the
possibility of calling linking different libraries
against incompatible versions of sub-libraries. 
This addressed most of the exceptions we were getting on windows.
All the useNetCDF logic is now done by SConstruct.
Made the init_target part of the build alias so that __ini__.py is created on a fresh checkout.

py_tests mostly pass on windows, only need to track down the exception in run_tests.

Revision 1235 - Directory Listing
Modified Mon Aug 13 00:25:29 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/escript
Started the removal of IS_WINDOWS_PLATFORM, and now insis that the windows options file be kept up to date, and be complete.

boost_libs -> boost_lib.

Revision 1204 - Directory Listing
Modified Sat Jun 23 11:43:12 2007 UTC (10 years, 5 months ago) by gross
Original Path: trunk/escript
a frame for an improved lumping procedure added.

Revision 1174 - Directory Listing
Modified Tue May 29 07:05:59 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/escript
more modifications to the test rquired by the new intergartion schemes

Revision 1171 - Directory Listing
Modified Fri May 25 06:55:05 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/escript
some modifications to the tests to consider the new integration schemes for tri and tet

Revision 1149 - Directory Listing
Modified Thu May 17 00:30:15 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript
some fixes from the windows version

Revision 1141 - Directory Listing
Modified Tue May 15 04:24:51 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript
Some changes to make things run on windows. There is still a problem with netcdf an long file names on windows but there is the suspicion that this is a bigger problem related to boost (compiler options). In fact runs with large numbers of iteration/time steps tend to create seg faults. 

Revision 1139 - Directory Listing
Modified Mon May 14 05:12:53 2007 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk/escript
Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.


Revision 1137 - Directory Listing
Modified Thu May 10 08:11:31 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript
This version passes the tests on windows except for 

   * vtk
   * netCDF

The version needs to be tested on altix and linux

Revision 1131 - Directory Listing
Modified Tue May 8 05:52:21 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript
netcdf c++ interface removed

Revision 1130 - Directory Listing
Modified Tue May 8 04:23:51 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript


Revision 1129 - Directory Listing
Modified Tue May 8 04:23:25 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript


Revision 1128 - Directory Listing
Modified Tue May 8 04:22:53 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript


Revision 1127 - Directory Listing
Modified Tue May 8 03:23:12 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript


Revision 1125 - Directory Listing
Modified Thu May 3 05:40:30 2007 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk/escript
Print more convergence info in the verbose output


Revision 1122 - Directory Listing
Modified Tue May 1 03:21:04 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript
As the LinearPDE uses coefficients as reduced even if they are handed
over as full the projector runs into a problem when reduced and full
arguments are used in the same projector. Now the projector resets the
coefficients befor starting the projection.



Revision 1118 - Directory Listing
Modified Tue Apr 24 08:55:04 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/escript
problem with reset of faulty PDE rhs fixed.

Revision 1107 - Directory Listing
Modified Thu Apr 19 02:14:18 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.



Revision 1106 - Directory Listing
Modified Thu Apr 19 01:54:57 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
I take it all back! Ignore the last check in.



Revision 1105 - Directory Listing
Modified Thu Apr 19 01:10:49 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
The modification fixes a problem with the garbage collection in python. 
The problem seems that a default value of a method argument is seen as
being dependend on the the instance of the class. This produces a
circular dependence and can stop the garbage collection to delete the
object. The situation becomes in particulary bad if the class provides a
__del__ method as it is not clear where to break the circle.

We need to revisit all python classes in escript & Co to remove this
possible problem. 



Revision 1092 - Directory Listing
Modified Fri Apr 13 03:39:49 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
the useless profilinf for data.cpp removed (doDebug=yes should work again)
and a small bug in the gmsh reader fixed.


Revision 1072 - Directory Listing
Modified Thu Mar 29 06:44:30 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
PDE assemblage for reduced integration order + tests added.



Revision 1064 - Directory Listing
Modified Tue Mar 27 06:21:02 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
test for reduced integration order for grad, interpolate and integrate added.
Bug shown by the tests have been fixed.



Revision 1063 - Directory Listing
Modified Mon Mar 26 08:29:18 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
test for creation of reduced function spaces added.
tests for dumping data on reduced function spaces added.
This showed a small bug with compilation setting for compilation with netCDF which is fixed



Revision 1062 - Directory Listing
Modified Mon Mar 26 06:17:53 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.

Revision 1059 - Directory Listing
Modified Fri Mar 23 11:01:53 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/escript
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.

Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/escript
clear name tagging is supported now.

Revision 1042 - Directory Listing
Modified Mon Mar 19 03:50:34 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/escript
a small fix which deals with the case that a Model class
does not take the argument debug.




Revision 1034 - Directory Listing
Modified Wed Mar 14 23:49:20 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/escript
In VC++ boost has problems with numarray arguments from python. This
fixes that problem by taking python::object arguments from the python
level and converting it into python::numeric::array on the C++ level.
This hasn't been tested with VC++ yet.

Moreover the two Data methods dealing with big numarrays as argument and
return value have been removed.



Revision 1032 - Directory Listing
Modified Wed Mar 14 06:32:09 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/escript
Implement inverse hyp. functions.



Revision 1031 - Directory Listing
Modified Wed Mar 14 06:03:21 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/escript
Finer control of the inverse hyp. functions.



Revision 1030 - Directory Listing
Modified Wed Mar 14 05:14:44 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/escript
Assemble_CopyElementData.c - resolve with my local edits.
Mesh_saveVTK.c - remove debug print.
DataArrayView.h - remove dllim/export declarations on template functions.



Revision 1028 - Directory Listing
Modified Wed Mar 14 00:15:24 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/escript
modifications to be compliant with _WIN32. The substitutes for asinh, acosh, atanh are still missing (erf will through an exception)

Revision 1026 - Directory Listing
Modified Tue Mar 13 08:25:00 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/escript
Data.cpp - indefed out the erf & inv. hyperbolics on windows.
DataAlgorithmAdapterTestCase & DataTestCase - Fix the ifndef on _WIN32 & _INTEL_COMPILER
SConstruct - chamges to the PATH so windows can find DLLs.



Revision 1023 - Directory Listing
Modified Tue Mar 13 05:43:36 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/escript
netCDF can now be switched off at compilation. Consequently load and dump of data objects is not available then.

Revision 1022 - Directory Listing
Modified Tue Mar 13 02:25:53 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/escript
Now define the destructors for all the Exceptions (sorry guys & gals).



Revision 1020 - Directory Listing
Modified Mon Mar 12 10:12:36 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/escript
Added explicit destructors to all Exception classes.

Fixed an ifdef in TestCase.cpp

Made the conditional definition of M_PI in LocalOps.h
depend only on M_PI being undefined.

Replace dynamically dimensioned arrays in DataFactory & DataTagged with malloc.

sort() method of list does not take a named argument
(despite the manual's claims to the contary).



Revision 990 - Directory Listing
Modified Wed Feb 21 04:27:52 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk/escript
Cleaned up the python in-line doc to make epydoc work better

Configured for shake71 to find NetCDF libraries


Revision 985 - Directory Listing
Modified Tue Feb 20 04:02:10 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
 small bug for openmp fixed.

Revision 984 - Directory Listing
Modified Tue Feb 20 03:33:45 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
warning in dump and load at altix fixed.

Revision 983 - Directory Listing
Modified Tue Feb 20 02:49:08 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
full Data object dump and load now available. Tests added.

Revision 982 - Directory Listing
Modified Mon Feb 19 23:55:52 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
data object load checks for sample  ordering now.

Revision 980 - Directory Listing
Modified Mon Feb 19 05:12:38 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
bug in Simulation fixed.

Revision 975 - Directory Listing
Modified Thu Feb 15 10:18:18 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
first steps towards restart in modelframe

Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk/escript
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.



Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk/escript
Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.



Revision 967 - Directory Listing
Modified Tue Feb 13 09:40:12 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
dump and load of expanded data via netCDF added. some test are still missing.

Revision 966 - Directory Listing
Modified Tue Feb 13 05:45:18 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
ops! escript/src/DataExpanded.cpp should not be in there

Revision 965 - Directory Listing
Modified Tue Feb 13 05:38:45 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
johns local setting removed.

Revision 964 - Directory Listing
Modified Tue Feb 13 05:10:26 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI).
Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will
profit form this at this stage but it will allow a faster dump of data objects.



Revision 957 - Directory Listing
Modified Tue Feb 13 00:33:00 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
some test about lists added.

Revision 956 - Directory Listing
Modified Tue Feb 13 00:03:40 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
Older versions of numarray dont have the "all" function. The test has been modified to run for these order versions. too.



Revision 954 - Directory Listing
Modified Fri Feb 9 08:56:14 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
testing for completness if simulations improved.

Revision 952 - Directory Listing
Modified Wed Feb 7 23:53:24 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
testing of simulation completness improved.

Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed. 



Revision 944 - Directory Listing
Modified Tue Jan 30 08:57:37 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
PropertySet added

Revision 939 - Directory Listing
Modified Thu Jan 25 04:23:38 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
bug in finley mesh reader fixed

Revision 938 - Directory Listing
Modified Thu Jan 25 03:40:54 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/escript
the FinleyReade accepts now gmsh files (use format="gmsh")
and
Simulations are accepting Models only. Moreover, there is a test now
if a all Models targeted by a model in the simulation or a subsimulation
are included in  simulation or a subsimulation. 



Revision 926 - Directory Listing
Modified Fri Jan 12 06:31:37 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk/escript
modelframe support dictonaries with fixed type of key and value. only writing implemented yet

Revision 924 - Directory Listing
Modified Wed Jan 10 03:39:27 2007 UTC (10 years, 11 months ago) by trankine
Original Path: trunk/escript
Win32 port modifications
"or" is not a valid modifier under win intel compiler

* Data.cpp - incorrect "or"s
* DataExpanded.cpp - incorrect "or"s



Revision 922 - Directory Listing
Modified Fri Jan 5 04:23:05 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk/escript
setValueOfDataPoint accepts double value as argument now

Revision 921 - Directory Listing
Modified Fri Jan 5 00:54:37 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk/escript
I have done some clarification on functions that allow to access individual data point values in a Data object. 
The term "data point number" is always local on a MPI process and referes to the value (data_point_in_sample, sample)
as a single identifyer (data_point_in_sample + sample * number_data_points_per_sample). a "global data point number"
referes to a tuple of a processour id and local data point number.

The function convertToNumArrayFromSampleNo has been removed now and convertToNumArrayFromDPNo renamed to getValueOfDataPoint.
There are two new functions:

   getNumberOfDataPoints
   setValueOfDataPoint

This allows you to do things like:

  in=Data(..)
  out=Data(..)
   for i in xrange(in.getNumberOfDataPoints())
       in_loc=in.getValueOfDataPoint(i)
       out_loc=< some operations on in_loc>
       out.setValueOfDataPoint(i,out_loc)


Also mindp  is renamed to  minGlobalDataPoint and there is a new function getValueOfGlobalDataPoint. While in MPI the functions getNumberOfDataPoints and getValueOfDataPoint are working locally on each process (so the code above is executed in parallel).
the latter allows getting a single value across all processors. 



Revision 920 - Directory Listing
Modified Thu Jan 4 00:00:40 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk/escript
small fix on DataSource.fromDom

Revision 918 - Directory Listing
Modified Wed Jan 3 06:30:00 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk/escript
fixes on ESySXML to get runmodel going.

    * object ids are now local for read and write of XML
    * ParameterSets are now written with class name
    * ParameterSets linked by other ParameterSets (previously only Models) are written now 
    * list are now lists of str (rather than bools), lists with bool, int or float are mapped to numarray
    * numarray are writen with generic types Bool, Int, Float (portability!)



Revision 917 - Directory Listing
Modified Tue Jan 2 02:46:53 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk/escript
some EsysXML input files. rebuild still fails for these files

Revision 914 - Directory Listing
Modified Thu Dec 14 04:38:18 2006 UTC (11 years ago) by gross
Original Path: trunk/escript
access to the number of samples added

Revision 912 - Directory Listing
Modified Wed Dec 6 03:29:49 2006 UTC (11 years ago) by gross
Original Path: trunk/escript
modellib.WriteVTK has been rewritten. Instead of only three data objects scalar,
vector, tensor it takes now up to 20 data objects data0 ... data19 and writes it into a 
single VTK file. There is also the possibilty to define individiual name tags name0,..., name19.
If no name is given the corresponding attribute name of the Link target is used. 
This simplifies the usage and increases efficiency.




Revision 908 - Directory Listing
Modified Thu Nov 23 06:39:39 2006 UTC (11 years ago) by gross
Original Path: trunk/escript
some fixes

Revision 906 - Directory Listing
Modified Tue Nov 21 05:34:15 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/escript
some minor fixes

Revision 893 - Directory Listing
Modified Wed Nov 8 08:20:19 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/escript
small bug fixed

Revision 885 - Directory Listing
Modified Wed Nov 1 09:05:51 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/escript
DataSource for modelib added

Revision 881 - Directory Listing
Modified Thu Oct 26 02:54:47 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/escript
some small canges to clip function to allow unbounded upper or lower values

Revision 880 - Directory Listing
Modified Wed Oct 25 23:58:16 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/escript
Locator accepts list of locations now

Revision 877 - Directory Listing
Modified Wed Oct 25 03:06:58 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/escript
backtraking in the saddlepoint problem (not perfect yet)

Revision 876 - Directory Listing
Modified Thu Oct 19 03:50:23 2006 UTC (11 years, 2 months ago) by ksteube
Original Path: trunk/escript
Added erf (error function) implementation


Revision 875 - Directory Listing
Modified Tue Oct 17 12:42:47 2006 UTC (11 years, 2 months ago) by elspeth
Original Path: trunk/escript
DataSources added to modelframe/EsysXML, and tests to run_xml.py. Currently does not actually handle data 
sources, 
just references. Functionality is in progress. 

EsysXML format (URI can be a local file reference, or a remote reference such as an ftp site, fileformat 
is currently any string descriptor, such as finleyMesh or gmtdata):
 <Parameter type="DataSource">
                        <Name>
                                uritest
                        </Name>
                        <Value>
                                <DataSource>
                                        <URI>
                                                somelocalfile.txt
                                        </URI>
                                        <FileFormat>
                                                text
                                        </FileFormat>
                                </DataSource>
                        </Value>
                </Parameter>



Revision 874 - Directory Listing
Modified Tue Oct 17 12:06:11 2006 UTC (11 years, 2 months ago) by elspeth
Original Path: trunk/escript
Changed numarray xml structure slightly, to fit better with the rest of 
the XML. 
Added lists of booleans as a data type in modelframe.
Fixed bug with bools in modelframe.


Revision 873 - Directory Listing
Modified Mon Oct 16 04:07:33 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/escript
uszawa scheme runs with variable viscosity

Revision 871 - Directory Listing
Modified Sat Oct 14 08:25:54 2006 UTC (11 years, 2 months ago) by elspeth
Original Path: trunk/escript
Numarray support added to modelframe and tests for numarray added to run_xml.
Numarrays will look like this in ESysXML:

A 2 x 3 numarray will look like this:

<Parameter type="NumArray">
                        <Name>
                                numtest
                        </Name>
                        <Value>
                                <ArrayType>
                                        Float64
                                </ArrayType>
                                <Shape>
                                        2 3
                                </Shape>
                                <Data>
                                        1.0 2.0 3.0 3.0 4.0 5.0
                                </Data>
                        </Value>
                </Parameter>

A numarray vector will look like this:

<Parameter type="NumArray">
                        <Name>
                                numtest
                        </Name>
                        <Value>
                                <ArrayType>
                                        Float64
                                </ArrayType>
                                <Shape>
                                        3
                                </Shape>
                                <Data>
                                        3.0 4.0 5.0
                                </Data>
                        </Value>
                </Parameter>




Revision 867 - Directory Listing
Modified Mon Oct 9 06:50:09 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/escript
a class to solving sattle point problems using uszawa scheme (not functional yet)

Revision 865 - Directory Listing
Modified Fri Oct 6 10:02:18 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/escript
some functions for minimizing a function added. there is still some work required but successfully applied in an aplication

Revision 856 - Directory Listing
Modified Tue Sep 26 01:00:36 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/escript
data print shows now the element reference number

Revision 855 - Directory Listing
Modified Fri Sep 22 09:30:06 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/escript
some tests for triangle meshes added

Revision 854 - Directory Listing
Modified Thu Sep 21 05:29:42 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/escript
Some modifications to the binary operations +,-,*/, pow. 
The code is a bit simpler now and more efficient has there is
no reseising required now. the resizing method has been removed as
it is very, very inefficient. Even serial code should be faster now.
It is now forbidden to do an inplace update of scalar data object with an object 
of rank >0 as this is very slow (and does not make much sense). 



Revision 838 - Directory Listing
Modified Tue Sep 5 22:45:55 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/escript
drucker prager works now but there is still some work on the stepsize control needed.

Revision 836 - Directory Listing
Modified Mon Sep 4 22:37:25 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/escript
new implementation of the tangential operator and a restriction of time step size change added

Revision 829 - Directory Listing
Modified Thu Aug 31 01:31:15 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/escript
some changes on the drucker-prager (it does not work yet)

Revision 826 - Directory Listing
Modified Tue Aug 29 09:12:33 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/escript
ken and I did not have a good afternoon. our checkin was very buggy. fixed

Revision 824 - Directory Listing
Modified Tue Aug 29 05:22:50 2006 UTC (11 years, 3 months ago) by ksteube
Original Path: trunk/escript
C_GeneralTensorProduct was modifying the function space of the
first arg.  Now creating a shallow copy and using the copy to
avoid this.


Revision 814 - Directory Listing
Modified Wed Aug 23 09:31:10 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/escript
small bug in general tensor propduct fixed

Revision 813 - Directory Listing
Modified Mon Aug 21 02:08:47 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/escript
Tensor products for Data objects are now computed by a C++ method
C_GeneralTensorProduct, which calls C function matrix_matrix_product
to do the actual calculation.

Can perform product with either input transposed in place, meaning
without first computing the transpose in a separate step.


Revision 804 - Directory Listing
Modified Thu Aug 10 01:12:16 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk/escript
the new function swap_axes + tests added. (It replaces swap).



Revision 801 - Directory Listing
Modified Wed Aug 9 00:49:56 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/escript
Removed outdated tests that use trace()



Revision 800 - Directory Listing
Modified Tue Aug 8 11:23:18 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk/escript
new function _swap. Python wrapper + testing is still missing.



Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk/escript
Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.



Revision 797 - Directory Listing
Modified Thu Aug 3 02:03:18 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk/escript
function added to manually free unused memory in the memory manager

Revision 795 - Directory Listing
Modified Mon Jul 31 01:23:58 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/escript
Fixed typo in method name


Revision 791 - Directory Listing
Modified Thu Jul 27 00:37:57 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk/escript
updated calls to matrixmult to the new version matrix_mult


Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk/escript
changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.  



Revision 789 - Directory Listing
Modified Wed Jul 26 05:41:11 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk/escript
Inserted PASO_MPI macro in Data.h to match source file

Revision 785 - Directory Listing
Modified Tue Jul 25 03:48:10 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk/escript
some new functions around tensor product added.

Revision 783 - Directory Listing
Modified Tue Jul 18 01:32:50 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/escript
coordinates, element size and normals returned by corresponding
FunctionSpace mesthods are now protected against updates. So 
+=, -=, *=, /=, setTaggedValue, fillFromNumArray will through an
excpetion.

The FunctionSpace class does nut buffer the oordinates, element size and
normals yet.



Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/escript
Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.  


Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/escript
+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows



Revision 777 - Directory Listing
Modified Wed Jul 12 08:54:45 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/escript
integration with persistent jacobeans is running now

Revision 775 - Directory Listing
Modified Mon Jul 10 04:00:08 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk/escript
Modified the following python methods in escript/py_src/util.py to
call faster C++ methods:
	escript_trace
	escript_transpose
	escript_symmetric
	escript_nonsymmetric


Revision 773 - Directory Listing
Modified Fri Jul 7 10:10:00 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/escript
assemblage tests added

Revision 772 - Directory Listing
Modified Fri Jul 7 05:47:28 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/escript
the check for inhomogenous constraint has been modified so ot does nor
require a tolerance which is a bit risky.


Revision 767 - Directory Listing
Modified Fri Jun 30 07:29:08 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/escript
new FunctionSpace method setTags added

Revision 765 - Directory Listing
Modified Fri Jun 30 06:37:11 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/escript
The test for the contact normal has been modified to take in cosideration the fact that the normal is unique up to the factor +/-1. 
Now the test checks the kllength of the normal for 1 and the angle to the reference normal.



Revision 758 - Directory Listing
Modified Mon Jun 26 13:52:42 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/escript
+ Added PASO_MPI conditional compilation guard to prevent inclusion of mpi.h when not using mpi.
Trunk now compiles and runs on both win32 and linux.

Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/escript
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)


Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/escript
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.


Revision 728 - Directory Listing
Modified Mon May 15 02:01:18 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/escript
modelframe test examples work now

Revision 727 - Directory Listing
Modified Fri May 12 06:31:06 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/escript
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.



Revision 720 - Directory Listing
Modified Thu Apr 27 10:16:05 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/escript
formatting errors in epydoc tags fixed

Revision 713 - Directory Listing
Modified Thu Apr 27 05:03:44 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/escript
relative error tests have been introduced into a few more of the unit test.

Revision 711 - Directory Listing
Modified Wed Apr 26 22:39:51 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/escript
tests pass now on gcc: some tests did not take round-off errors into consideration

Revision 710 - Directory Listing
Modified Wed Apr 26 22:22:16 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/escript
"scons dodebug=no all_tests" runs now. 

Some of the tests could only pass under dodebug=yes as they checked for
exceptions from asserts. The tests are switched off now if DOASSERT is
not set.



Revision 709 - Directory Listing
Modified Wed Apr 26 06:35:36 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/escript
fixes to get scons py_tests going: mainly fixes in the pathes

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
latex build documentation is working now

Revision 706 - Directory Listing
Modified Sat Apr 8 16:13:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
python tests compile and run but there is still a problem with dependencies'


Revision 705 - Directory Listing
Modified Fri Apr 7 17:57:37 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
python tests are allmost working

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.



Revision 699 - Directory Listing
Modified Fri Mar 31 06:27:56 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
now float**Data is running

Revision 698 - Directory Listing
Modified Fri Mar 31 04:52:55 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
test with tagged data pass now

Revision 697 - Directory Listing
Modified Fri Mar 31 04:48:56 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
bug with tagged data fixed

Revision 695 - Directory Listing
Modified Thu Mar 30 12:44:11 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
obsolet tests removed

Revision 693 - Directory Listing
Modified Thu Mar 30 08:34:08 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
DataVariable removed. it is not used.

Revision 690 - Directory Listing
Modified Tue Mar 28 07:18:51 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk/escript
+ Added basic_py_tests target which will run the basic set of python tests. The list of python tests was taken from autoscons


Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk/escript
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 657 - Directory Listing
Modified Fri Mar 24 08:28:15 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
some typos fixed

Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk/escript
More copyright info added.


Revision 637 - Directory Listing
Modified Thu Mar 23 10:55:31 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/escript
more copyright statements added

Revision 629 - Directory Listing
Modified Thu Mar 23 02:41:25 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk/escript
Copyright information added.


Revision 621 - Directory Listing
Modified Wed Mar 22 07:44:18 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
bugs in test fixed

Revision 615 - Directory Listing
Modified Wed Mar 22 02:12:00 2006 UTC (11 years, 9 months ago) by elspeth
Original Path: trunk/escript
More copyright information.


Revision 614 - Directory Listing
Modified Wed Mar 22 01:37:07 2006 UTC (11 years, 9 months ago) by elspeth
Original Path: trunk/escript
Corrected spelling of 'license' in url so that the link actually points to the license.


Revision 613 - Directory Listing
Modified Wed Mar 22 01:12:32 2006 UTC (11 years, 9 months ago) by elspeth
Original Path: trunk/escript
More copyright information inserted.


Revision 612 - Directory Listing
Modified Tue Mar 21 23:54:39 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
strange problem with import numarray.linear_algebra fixed

Revision 609 - Directory Listing
Modified Tue Mar 21 09:46:39 2006 UTC (11 years, 9 months ago) by elspeth
Original Path: trunk/escript
Updated copyright and licence notices.


Revision 608 - Directory Listing
Modified Tue Mar 21 09:46:06 2006 UTC (11 years, 9 months ago) by elspeth
Original Path: trunk/escript
moved "import numarray.linear_algebra" to function that uses it, in case it is not installed


Revision 602 - Directory Listing
Modified Fri Mar 17 06:57:46 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
more work on pyvisi integration

Revision 596 - Directory Listing
Modified Wed Mar 15 22:41:23 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
some work on AdvectivePDE for the scalar case

Revision 595 - Directory Listing
Modified Tue Mar 14 23:52:45 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
test_utilOnFinley fixed (did run the tests that still fail)

Revision 594 - Directory Listing
Modified Tue Mar 14 23:36:08 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
print message removed

Revision 588 - Directory Listing
Modified Fri Mar 10 04:45:04 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
1D and 3D tests for eigenvalues_and_eigenvector added.

Revision 587 - Directory Listing
Modified Fri Mar 10 02:26:50 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
eigenvalues_and_eigenvector fucntion added. test for 2D problem is added and is passed.

Revision 585 - Directory Listing
Modified Thu Mar 9 23:47:42 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
problem with eigenvalue of zero matrix fixed (thanks Dr Hale)

Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
eigenvalues: compiles and passes tests on altix now

Revision 583 - Directory Listing
Modified Wed Mar 8 08:15:34 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
_eigenvalues_and_eigenvector method added of data object. the algorithm has been tested on floats in python but not on data objects.

Revision 580 - Directory Listing
Modified Wed Mar 8 05:45:51 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
faster version of the local eigenvalue calculation

Revision 577 - Directory Listing
Modified Fri Mar 3 08:32:16 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
installation of new inc file

Revision 576 - Directory Listing
Modified Fri Mar 3 08:28:42 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
some steps towards eigenvalue and eigenvector calculation

Revision 574 - Directory Listing
Modified Thu Mar 2 06:31:24 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
some modifications on eigenvalues to make it a bit more robust.

Revision 571 - Directory Listing
Modified Tue Feb 28 06:53:17 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
modify whereZero etc methods to also accept a tolerance parameter

Revision 570 - Directory Listing
Modified Tue Feb 28 06:51:25 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
extend these tests to test DataTagged objecrs also

Revision 564 - Directory Listing
Modified Thu Feb 23 05:22:31 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
extend testing to include DataTagged objects with no
tags, only default values


Revision 563 - Directory Listing
Modified Thu Feb 23 05:09:47 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
extend operator tests to include DataTagged and DataExpanded


Revision 562 - Directory Listing
Modified Thu Feb 23 05:03:16 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
further fix for DataTAgged::dp_algorithm, was not working for DataTagged objects with 0 tags

Revision 561 - Directory Listing
Modified Thu Feb 23 03:49:50 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
minor reformatting


Revision 560 - Directory Listing
Modified Thu Feb 23 01:58:35 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
reinstate testing of DataTagged object unary ops


Revision 559 - Directory Listing
Modified Thu Feb 23 01:43:44 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
reimplement dp_algorithm for DataTagged, existing
implementation was complete rubbish
(ich bin so beschämt!)


Revision 557 - Directory Listing
Modified Wed Feb 22 05:11:56 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
add test case for case where binaryOp combines a DataTagged and a scalar

Revision 556 - Directory Listing
Modified Wed Feb 22 04:45:15 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
reinstate testing using DataTagged objects


Revision 555 - Directory Listing
Modified Wed Feb 22 04:44:10 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
fixed binaryOp for combination of DataTagged and scalar values.
calculation of default value where RHS was a scalar was not yet
implemented


Revision 554 - Directory Listing
Modified Wed Feb 22 04:02:54 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
tests for tagged data fixed. test failing on maxval with segmenation fault (peinlich, peinlich)

Revision 550 - Directory Listing
Modified Wed Feb 22 02:14:38 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
more tests on slicing

Revision 549 - Directory Listing
Modified Wed Feb 22 00:45:48 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
extend testing of DataTagged setSlice to include case where
source and target have mismatched tag sets


Revision 548 - Directory Listing
Modified Tue Feb 21 23:52:41 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
modify tests for binary operations and setSlice to ensure situations where two DataTaggeds with mismatched tag sets are tested correctly

Revision 547 - Directory Listing
Modified Tue Feb 21 06:10:54 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/escript
solution and reduced solution can have reference numbers now!

Revision 546 - Directory Listing
Modified Tue Feb 21 01:59:07 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
reinstate testing of DataTagged objects


Revision 545 - Directory Listing
Modified Tue Feb 21 01:24:05 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
reinstate testing using DataTagged values


Revision 544 - Directory Listing
Modified Tue Feb 21 01:23:23 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
minor comment fixes


Revision 543 - Directory Listing
Modified Tue Feb 21 01:18:38 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk/escript
fix BinaryOp for DataTagged values - existing implementation was adding
tags from RHS to LHS using RHS's default value - should have been using
LHS's default value! fixed now


Revision 542 - Directory Listing
Modified Mon Feb 20 06:53:12 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
reinstate sliceSetting testing of DataTagged


Revision 541 - Directory Listing
Modified Mon Feb 20 06:50:39 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
ensure src and dest objects have matching tag sets in setSlice
by adding tags present in src but not in dest to dest using
dest's default value before doing actual slicing


Revision 540 - Directory Listing
Modified Mon Feb 20 06:05:32 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
reinstate sliceGetting testing for DataTagged objects


Revision 539 - Directory Listing
Modified Mon Feb 20 04:12:51 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add a test case for tag() method


Revision 538 - Directory Listing
Modified Mon Feb 20 03:43:25 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
minor formatting changes


Revision 537 - Directory Listing
Modified Mon Feb 20 02:00:18 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
refine/extend tests for slicing, particularly those for DataTagged


Revision 536 - Directory Listing
Modified Fri Feb 17 03:20:53 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
symmetric and nonsymmetric part functions added

Revision 535 - Directory Listing
Modified Fri Feb 17 02:27:06 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
minor comment changes


Revision 534 - Directory Listing
Modified Fri Feb 17 01:03:53 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
finish testing of DataTagged::setSlice


Revision 533 - Directory Listing
Modified Thu Feb 16 06:49:59 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
testing setSlice with rank1 and rank 3 values and multiple tags


Revision 531 - Directory Listing
Modified Wed Feb 15 08:11:10 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
a new version of lumping implemented (does not need a stiffness matrix)

Revision 530 - Directory Listing
Modified Wed Feb 15 07:11:00 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
eigenvalues is working now

Revision 529 - Directory Listing
Modified Wed Feb 15 03:58:50 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
small bugs in eigenvalues function fixed. 3x3 on data still given wrong results

Revision 528 - Directory Listing
Modified Wed Feb 15 02:20:33 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
local eigenvalues added (not tested yet)

Revision 527 - Directory Listing
Modified Wed Feb 15 01:25:57 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
extend setSlice testing to include DataTagged with default values


Revision 525 - Directory Listing
Modified Tue Feb 14 06:56:13 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
rob's strange NoPDE class added

Revision 524 - Directory Listing
Modified Tue Feb 14 05:55:46 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
more testing of setSlice


Revision 520 - Directory Listing
Modified Tue Feb 14 05:45:11 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
obsolet

Revision 519 - Directory Listing
Modified Tue Feb 14 05:30:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
fix comments for setSlice - were totally misleading!


Revision 518 - Directory Listing
Modified Tue Feb 14 05:18:09 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add some basic testing for DataTagged::setSlice


Revision 517 - Directory Listing
Modified Tue Feb 14 02:25:02 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
tests for __getitem__ added

Revision 516 - Directory Listing
Modified Tue Feb 14 01:53:58 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
comprehensive testing of DataTagged::getSlice completed


Revision 515 - Directory Listing
Modified Mon Feb 13 05:59:51 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
split slicing testing into getSlice and setSlice tests
add testing for DataTagged objects with one tagged value


Revision 514 - Directory Listing
Modified Mon Feb 13 04:47:47 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add testing of slicing methods


Revision 513 - Directory Listing
Modified Mon Feb 13 04:46:51 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
comment and formatting changes


Revision 511 - Directory Listing
Modified Fri Feb 10 05:39:18 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
extend basic testing of Data objects containing DataTagged objects

Revision 510 - Directory Listing
Modified Fri Feb 10 04:00:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add tests for getSampleData

Revision 509 - Directory Listing
Modified Fri Feb 10 03:24:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
minor comment changes


Revision 508 - Directory Listing
Modified Fri Feb 10 01:41:55 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
comprehensive testing of reshapeDataPoint method

Revision 507 - Directory Listing
Modified Thu Feb 9 06:13:07 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
minor comment changes


Revision 506 - Directory Listing
Modified Thu Feb 9 06:06:02 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
extend testing for binary and unary operations
and add comprehensive testing for method getSampleDataByTag


Revision 504 - Directory Listing
Modified Wed Feb 8 05:51:27 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
initial testing of operations involving DataTagged objects


Revision 503 - Directory Listing
Modified Wed Feb 8 04:25:40 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add test for copy constructors


Revision 502 - Directory Listing
Modified Wed Feb 8 03:57:20 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add test for setTaggedValue


Revision 501 - Directory Listing
Modified Wed Feb 8 03:37:20 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add extensive testing of addTaggedValue

Revision 500 - Directory Listing
Modified Tue Feb 7 05:19:07 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
fix a reference indicator


Revision 499 - Directory Listing
Modified Tue Feb 7 04:40:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add comprehensive testing for DataTagged with (1) default value only, (2) one tag value and (3) three tag values

Revision 497 - Directory Listing
Modified Tue Feb 7 01:28:01 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
extend testing of default DataTagged object


Revision 496 - Directory Listing
Modified Tue Feb 7 01:27:14 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
minor fix to DataTagged::getTagNumber
changes to comments and formatting
inline two methods


Revision 493 - Directory Listing
Modified Fri Feb 3 02:18:45 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
transpose added (just for me)

Revision 492 - Directory Listing
Modified Fri Feb 3 02:07:24 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
transpose function added

Revision 484 - Directory Listing
Modified Thu Feb 2 02:12:08 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add remainder of includes to SConscript includes install

Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)


Revision 480 - Directory Listing
Modified Wed Feb 1 05:15:12 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
rationalise #includes and forward declarations


Revision 478 - Directory Listing
Modified Tue Jan 31 02:21:49 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
rationalise #includes


Revision 477 - Directory Listing
Modified Mon Jan 30 07:20:20 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
rationalise #includes


Revision 474 - Directory Listing
Modified Mon Jan 30 04:23:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly


Revision 468 - Directory Listing
Modified Wed Jan 25 06:50:39 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
reorganised esysUtils to remove inc directory

Revision 462 - Directory Listing
Modified Wed Jan 25 00:02:03 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
traceback added

Revision 458 - Directory Listing
Modified Tue Jan 24 06:20:50 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
None options are excepted now. makes life a bit easier

Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
fix installation to directories specified by pyinstall and libinstall


Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
minor comment and formatting changes


Revision 451 - Directory Listing
Modified Mon Jan 23 23:45:43 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/escript
failing rin is catched now.

Revision 450 - Directory Listing
Modified Mon Jan 23 05:04:45 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/escript
remove old make based build system


Revision 443 - Directory Listing
Modified Fri Jan 20 06:22:38 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
L2 function added

Revision 442 - Directory Listing
Modified Fri Jan 20 04:39:43 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
kronecker (and relatives) take now a FunctionSpace as argument and return a Data object in tthis functionspace

Revision 441 - Directory Listing
Modified Fri Jan 20 03:40:39 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
and finally test for the divergence operator added. div() has been modified to take Symbol arguments

Revision 440 - Directory Listing
Modified Fri Jan 20 02:15:48 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
tests for normals at boundary and contact region added

Revision 439 - Directory Listing
Modified Fri Jan 20 01:46:22 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
tests for interpolation added

Revision 438 - Directory Listing
Modified Fri Jan 20 00:39:00 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
test for the grad fucntion added

Revision 437 - Directory Listing
Modified Fri Jan 20 00:16:58 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
comprehensive testing for integrate function added. tests for grad will be added in the next check in. GradTest is obsolete now.

Revision 436 - Directory Listing
Modified Thu Jan 19 22:36:36 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
bug fixed in integrate method. don;t use a[i,j]=.. to set a value in the numeric::array a but 
a[make_tuple(i,j)].



Revision 435 - Directory Listing
Modified Thu Jan 19 03:57:30 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
minor change

Revision 434 - Directory Listing
Modified Thu Jan 19 01:53:16 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
prints out the benchmark been started

Revision 433 - Directory Listing
Modified Tue Jan 17 23:54:38 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
new function inverse and tests added

Revision 431 - Directory Listing
Modified Fri Jan 13 05:07:10 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
new implementation of ILU0

Revision 430 - Directory Listing
Modified Wed Jan 11 06:40:50 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.

Revision 429 - Directory Listing
Modified Wed Jan 11 05:53:40 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
new implementation and testing for trace function

Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings. 




Revision 414 - Directory Listing
Modified Wed Jan 4 05:29:05 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
bug in CPP substitute fixed.

Revision 413 - Directory Listing
Modified Tue Jan 3 08:27:19 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
inner returns right functionspace now

Revision 410 - Directory Listing
Modified Fri Dec 23 01:27:38 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
bug fixed

Revision 409 - Directory Listing
Modified Fri Dec 23 01:13:41 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
bug fixed

Revision 400 - Directory Listing
Modified Wed Dec 21 23:13:39 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/escript
Some chnages required for oder numarray versions. mai problem is that
operations on array objects with rank 0 sometimes return float rather
than arrays. This problem seems to be fixed in newer releases.



Revision 397 - Directory Listing
Modified Wed Dec 21 05:11:31 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
typo fixed

Revision 396 - Directory Listing
Modified Wed Dec 21 05:08:25 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
tests for clip, maximum, minimum added

Revision 395 - Directory Listing
Modified Wed Dec 21 02:41:59 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
test is splitted to reduce memory demand during compilation

Revision 393 - Directory Listing
Modified Tue Dec 20 05:40:43 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
set number of threads works now

Revision 392 - Directory Listing
Modified Tue Dec 20 05:39:30 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
Utils added for compilation

Revision 391 - Directory Listing
Modified Tue Dec 20 05:36:50 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
intreface for setting the number of threads from python

Revision 390 - Directory Listing
Modified Tue Dec 20 03:39:24 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
os.loginname does not work under pbs. the exception is caught now

Revision 387 - Directory Listing
Modified Tue Dec 20 00:37:20 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
scale allows now to switch on and off certain problems

Revision 386 - Directory Listing
Modified Tue Dec 20 00:31:52 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
the number of problems to run is now the less or equal then len(scale) and less or equal number of problems. This allows easier control

Revision 385 - Directory Listing
Modified Mon Dec 19 06:12:14 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
filerrs added

Revision 379 - Directory Listing
Modified Mon Dec 19 01:10:34 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
a filetr added

Revision 378 - Directory Listing
Modified Fri Dec 16 09:02:28 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
clip added

Revision 376 - Directory Listing
Modified Fri Dec 16 01:49:18 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
removed redundant test

Revision 375 - Directory Listing
Modified Fri Dec 16 01:44:11 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
fix method names to match new scheme

Revision 374 - Directory Listing
Modified Fri Dec 16 01:35:07 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
fix names of log/ln functions to match new scheme


Revision 373 - Directory Listing
Modified Fri Dec 16 01:31:06 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
modified number of data points in mesh to allow
testing with Bruce Function objects


Revision 364 - Directory Listing
Modified Thu Dec 15 04:38:28 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
a simple environment to run benchmarks (mainly for testing solvers)

Revision 362 - Directory Listing
Modified Thu Dec 15 02:07:55 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
removed unit-test runner scripts as unit-tests now run from scons

Revision 360 - Directory Listing
Modified Thu Dec 15 01:52:16 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
add target to run all unit tests, the build will fail
for this target if any unit test fails


Revision 358 - Directory Listing
Modified Wed Dec 14 07:55:19 2005 UTC (12 years ago) by cochrane
Original Path: trunk/escript
Updated link to epydoc generated documentation on the web site.


Revision 355 - Directory Listing
Modified Wed Dec 14 05:05:31 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
add explicit target for building of unit tests


Revision 353 - Directory Listing
Modified Wed Dec 14 04:13:59 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
bug fixed (thanks to Estelle)

Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!


Revision 351 - Directory Listing
Modified Tue Dec 13 09:12:15 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
time integration manger added

Revision 350 - Directory Listing
Modified Tue Dec 13 09:11:52 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
test for time integration manger added

Revision 349 - Directory Listing
Modified Tue Dec 13 07:35:31 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
bug fixed

Revision 348 - Directory Listing
Modified Tue Dec 13 07:33:10 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
advection diffusion class added

Revision 345 - Directory Listing
Modified Tue Dec 13 05:23:45 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
advection diffusion class added

Revision 342 - Directory Listing
Modified Tue Dec 13 01:50:42 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
minor formatting fix


Revision 341 - Directory Listing
Modified Mon Dec 12 05:26:10 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
some fixes to make the test to run for older numarray versions

Revision 340 - Directory Listing
Modified Mon Dec 12 05:10:45 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
pass in pyinstall value from top-level scons script and add
correct suffix in module level scons scipr


Revision 329 - Directory Listing
Modified Wed Dec 7 04:42:43 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
fixing the problem that older versions of numarray don't have a sign method

Revision 328 - Directory Listing
Modified Wed Dec 7 04:41:53 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
start to remove slicing opertions

Revision 325 - Directory Listing
Modified Wed Dec 7 02:08:17 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
now determine hostname via socket.gethostname() as HOSTNAME
environment variable is apparently not set on all platforms


Revision 324 - Directory Listing
Modified Wed Dec 7 01:10:36 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
add symlinks to include files - previously added by hand as cvs couldn't
handle them


Revision 322 - Directory Listing
Modified Tue Dec 6 04:53:30 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
add modelframe.py to list of python modules to install


Revision 320 - Directory Listing
Modified Tue Dec 6 04:35:27 2005 UTC (12 years ago) by svn
Original Path: trunk/escript
unit tests now run ok

Revision 319 - Directory Listing
Modified Tue Dec 6 04:25:37 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
temporary unit tests scripts

Revision 316 - Directory Listing
Modified Tue Dec 6 01:16:05 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
fix this test


Revision 315 - Directory Listing
Modified Tue Dec 6 01:13:57 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
change method calls to match new names for Data methods


Revision 314 - Directory Listing
Modified Tue Dec 6 00:55:22 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
rename method calls to match new Data boost interface names


Revision 313 - Directory Listing
Modified Mon Dec 5 07:01:36 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
and a bit more tests

Revision 312 - Directory Listing
Modified Mon Dec 5 07:01:00 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
reimplementation of maxval,minval and length. small bug in generalTensorProduct fixed

Revision 311 - Directory Listing
Modified Mon Dec 5 02:59:54 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
remove references to ln and length methods which have been removed
from class Data


Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
now load default options - by default!


Revision 304 - Directory Listing
Modified Fri Dec 2 06:04:06 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
changes in util.py worked in

Revision 293 - Directory Listing
Modified Fri Dec 2 03:46:39 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
updated

Revision 292 - Directory Listing
Modified Fri Dec 2 03:11:04 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
complete test set for generalTensorProduct and friends added.

Revision 291 - Directory Listing
Modified Fri Dec 2 03:10:06 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
just my private test generator

Revision 290 - Directory Listing
Modified Fri Dec 2 03:09:32 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
some minor bugs in util.py fixed.

Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
now automatically build unit tests as required based on dependencies
between unit tests and libraries


Revision 287 - Directory Listing
Modified Thu Dec 1 06:40:51 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
more tests added

Revision 286 - Directory Listing
Modified Thu Dec 1 06:40:20 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
length method is removed as it is too slow. use length in util.py instead

Revision 285 - Directory Listing
Modified Thu Dec 1 06:40:04 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
length method is removed as it is too slow. use length in util.py instead

Revision 283 - Directory Listing
Modified Wed Nov 30 23:35:29 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
some stuff

Revision 282 - Directory Listing
Modified Wed Nov 30 09:18:38 2005 UTC (12 years ago) by elspeth
Original Path: trunk/escript
Fixed XML duplication in output bug.


Revision 277 - Directory Listing
Modified Wed Nov 30 04:52:39 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
explicitly define dependencies between modules


Revision 269 - Directory Listing
Modified Wed Nov 30 01:59:55 2005 UTC (12 years ago) by elspeth
Original Path: trunk/escript
Fixed typos and import problems


Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
setup scons configuration to make and install python code


Revision 266 - Directory Listing
Modified Wed Nov 30 00:21:51 2005 UTC (12 years ago) by elspeth
Original Path: trunk/escript
Added handling for NoneType


Revision 265 - Directory Listing
Modified Tue Nov 29 22:56:08 2005 UTC (12 years ago) by elspeth
Original Path: trunk/escript
Minor bugfix - should now actually run simulations


Revision 261 - Directory Listing
Modified Tue Nov 29 07:34:35 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
runmodel added

Revision 260 - Directory Listing
Modified Tue Nov 29 07:34:06 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
small fix

Revision 252 - Directory Listing
Modified Tue Nov 29 05:58:03 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
pass in platform specific libraries via options files now


Revision 250 - Directory Listing
Modified Tue Nov 29 05:32:57 2005 UTC (12 years ago) by gross
Original Path: trunk/escript
initial checkin

Revision 248 - Directory Listing
Modified Tue Nov 29 04:58:23 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
add top level scons config files to allow building
of all unit tests for each module at once


Revision 246 - Directory Listing
Modified Tue Nov 29 04:27:00 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
allow compile options to be loaded from a config
file specified on the command line to scons


Revision 244 - Directory Listing
Modified Tue Nov 29 00:27:10 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
fixed an accidental commit which broke this script


Revision 241 - Directory Listing
Modified Mon Nov 28 06:14:47 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
if usegcc=1 is set on command line, load compiler options
fropm scons/gcc_options.py


Revision 239 - Directory Listing
Modified Mon Nov 28 05:49:32 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
read names of python and boost libraries from config file now


Revision 235 - Directory Listing
Modified Mon Nov 28 04:36:16 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
change scons config files for escript unit tests to read
compiler options from option file now


Revision 224 - Directory Listing
Modified Fri Nov 25 00:33:27 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
implement switching of debug compiler options based on command line flag 'debug'

Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
pass in cc/cxx settings from config file

Revision 217 - Directory Listing
Modified Thu Nov 24 06:48:50 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
import sys

Revision 216 - Directory Listing
Modified Thu Nov 24 06:35:14 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
first pass at importing compile options from an external file'


Revision 214 - Directory Listing
Modified Thu Nov 24 05:15:26 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
collect all information needed to determine build
configuration (ie: debug/nodebug, host, platform etc)


Revision 196 - Directory Listing
Modified Tue Nov 22 01:48:33 2005 UTC (12 years ago) by jgs
Original Path: trunk/escript
first draft scons construct files for remaining escript unit tests


Revision 192 - Directory Listing
Modified Mon Nov 21 04:52:14 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/escript
pass in top level install directory for finley/escript/bruce/paso
libraries when building via top level scons script


Revision 191 - Directory Listing
Modified Mon Nov 21 04:10:12 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/escript
push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files

Revision 190 - Directory Listing
Modified Mon Nov 21 03:27:42 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/escript
pass in value for esysroot and use this to determine include file locations

Revision 188 - Directory Listing
Modified Mon Nov 21 01:20:26 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/escript
explicitly add -fpic option to all compiler options lists
to ensure relocatable code is generated


Revision 184 - Directory Listing
Modified Fri Nov 18 06:14:18 2005 UTC (12 years, 1 month ago) by phornby
Original Path: trunk/escript
Remove unnecessary unary +'s from the numarray.array's because this is broken in some
versions of numarray.



Revision 181 - Directory Listing
Modified Fri Nov 18 04:28:47 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/escript
first draft of config/construct scripts for escript library


Revision 160 - Directory Listing
Modified Thu Nov 10 05:09:25 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/escript
fixed a broken constructor - simply didn't work


Revision 159 - Directory Listing
Modified Thu Nov 10 04:01:43 2005 UTC (12 years, 1 month ago) by matt
Original Path: trunk/escript
Added a more comprehensive data equivalence test based on X coordinates.



Revision 158 - Directory Listing
Modified Thu Nov 10 03:51:03 2005 UTC (12 years, 1 month ago) by matt
Original Path: trunk/escript
Added finley and bruce rectangle and brick Data archive tests.



Revision 157 - Directory Listing
Modified Wed Nov 9 10:01:06 2005 UTC (12 years, 1 month ago) by gross
Original Path: trunk/escript
initial checkin

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/escript
Copied from: trunk/esys2/escript revision 154
move all directories from trunk/esys2 into trunk and remove esys2


Revision 154 - Directory Listing
Modified Mon Nov 7 05:51:17 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-11-07


Revision 153 - Directory Listing
Modified Tue Oct 25 01:51:20 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-10-25


Revision 152 - Directory Listing
Modified Fri Oct 21 08:32:21 2005 UTC (12 years, 2 months ago) by phornby
Original Path: trunk/esys2/escript
DataConstantTestCase.cpp, DataExpandedTestCase.cpp:

Replace

DataExpanded testData1(FunctionSpace(),....)

with

FunctionSpace tmp_fns;
DataExpanded testData1(tmp_fns,shape,data);

for GCC's sake.




Added some profiling to PoissonSolverTest.py.


Revision 151 - Directory Listing
Modified Thu Sep 22 01:55:00 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-09-22


Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-09-15


Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-09-01


Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch dev-02 back to main trunk on 2005-08-23


Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript
erge of development branch dev-02 back to main trunk on 2005-08-12


Revision 146 - Directory Listing
Modified Fri Jul 29 01:44:29 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript
First merge of development branch dev-02 back to main trunk on 2005-07-29


Revision 143 - Directory Listing
Modified Mon Jul 25 05:39:50 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript
moved these files to modellib directory


Revision 142 - Directory Listing
Modified Mon Jul 25 05:28:20 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-07-25


Revision 141 - Directory Listing
Modified Mon Jul 25 05:15:41 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript
fixed to work with new python source/install directory structure


Revision 137 - Directory Listing
Modified Fri Jul 22 07:07:20 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript
removed all references to modellib module


Revision 133 - Directory Listing
Modified Fri Jul 22 06:26:05 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript
removing escript/lib/py_src/modellib


Revision 129 - Directory Listing
Modified Fri Jul 22 05:17:51 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript
removed references to modellib


Revision 128 - Directory Listing
Modified Fri Jul 22 05:13:08 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript
removed modellib code from escript source directory


Revision 126 - Directory Listing
Modified Fri Jul 22 03:53:08 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-07-22


Revision 124 - Directory Listing
Modified Wed Jul 20 06:14:58 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript
added ln(data) style wrapper for data.ln() - also added corresponding
implementation of Ln_Symbol class (not sure if this is right though)


Revision 123 - Directory Listing
Modified Fri Jul 8 04:08:13 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-07-08


Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (12 years, 6 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-06-09


Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-05-06


Revision 119 - Directory Listing
Modified Tue Apr 12 04:45:05 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 118 - Directory Listing
Modified Tue Apr 12 04:44:55 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-04-12


Revision 117 - Directory Listing
Modified Fri Apr 1 05:48:57 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 115 - Directory Listing
Modified Fri Mar 4 07:12:47 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 114 - Directory Listing
Modified Fri Mar 4 07:12:37 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/escript
Merge of development branch back to main trunk on 2005-03-04


Revision 113 - Directory Listing
Modified Mon Feb 28 07:06:33 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 106 - Directory Listing
Modified Thu Dec 23 07:20:12 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 105 - Directory Listing
Modified Thu Dec 23 07:20:07 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk/esys2/escript
commit of dev-01 branch back to main trunk on 2004-12-23


Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (13 years ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (13 years ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (13 years ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (13 years ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 95 - Directory Listing
Modified Wed Oct 27 00:53:16 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
disabled testSubtraction test for now - requires setTaggedValue interface
which takes Data object as argument


Revision 94 - Directory Listing
Modified Wed Oct 27 00:45:54 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 93 - Directory Listing
Modified Wed Oct 27 00:42:03 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
trying to fix cvs permissions wierdness


Revision 92 - Directory Listing
Modified Wed Oct 27 00:36:38 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
readded these


Revision 91 - Directory Listing
Modified Wed Oct 27 00:34:08 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
still trying to fix cvs issue


Revision 90 - Directory Listing
Modified Wed Oct 27 00:31:36 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
removed non-boost version of setTaggedValue - breaks escript.cpp


Revision 89 - Directory Listing
Modified Wed Oct 27 00:30:36 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
fixing cvs issue


Revision 88 - Directory Listing
Modified Wed Oct 27 00:23:36 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
fixed minor syntax error


Revision 84 - Directory Listing
Modified Tue Oct 26 23:51:56 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
*** empty log message ***


Revision 83 - Directory Listing
Modified Tue Oct 26 23:51:50 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
added dummy file to ensure CVS keeps this directory in the repository


Revision 82 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/escript
Initial revision


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