[escript] Log of /trunk/finley/src

Revision 855 - Directory Listing
Modified Fri Sep 22 09:30:06 2006 UTC (16 years, 6 months ago) by gross

some tests for triangle meshes added

Revision 853 - Directory Listing
Modified Wed Sep 20 05:56:36 2006 UTC (16 years, 6 months ago) by gross

some performance problems wit openmp fixed.

Revision 850 - Directory Listing
Modified Sun Sep 17 23:27:00 2006 UTC (16 years, 6 months ago) by gross

some problems with vtk writer fixed

Revision 818 - Directory Listing
Modified Sun Aug 27 11:10:34 2006 UTC (16 years, 6 months ago) by dhawcroft

saveVTK fixes

Revision 817 - Directory Listing
Modified Sat Aug 26 03:08:52 2006 UTC (16 years, 6 months ago) by ksteube

Can now compile and run with MPI on shake71

Revision 812 - Directory Listing
Modified Thu Aug 17 05:49:59 2006 UTC (16 years, 7 months ago) by dhawcroft

Revision 808 - Directory Listing
Modified Fri Aug 11 01:25:16 2006 UTC (16 years, 7 months ago) by ksteube

Can now build escript and use doxygen on shake71

Revision 806 - Directory Listing
Modified Thu Aug 10 11:58:52 2006 UTC (16 years, 7 months ago) by gross

Interface to the direct solver library UMLPACK is no implemented.

Revision 799 - Directory Listing
Modified Mon Aug 7 23:30:53 2006 UTC (16 years, 7 months ago) by ksteube

Moved a #pragma to modify the appropriate line

Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (16 years, 7 months ago) by gross

Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.

Revision 796 - Directory Listing
Modified Mon Jul 31 06:16:17 2006 UTC (16 years, 7 months ago) by dhawcroft

much faster parallel saveVTK
needs testers, don't be shy

Revision 794 - Directory Listing
Modified Sun Jul 30 03:45:01 2006 UTC (16 years, 7 months ago) by dhawcroft

Revision 793 - Directory Listing
Modified Sat Jul 29 19:40:22 2006 UTC (16 years, 7 months ago) by dhawcroft

Preliminary MPI version of saveVTK. Needs testers. Works for point data and should work for cell centered data.

Revision 788 - Directory Listing
Modified Wed Jul 26 05:12:15 2006 UTC (16 years, 7 months ago) by bcumming

small corrections to code in previous commit, and some header files that
should have been included in the last commit.

Revision 787 - Directory Listing
Modified Wed Jul 26 01:46:45 2006 UTC (16 years, 7 months ago) by bcumming

MPI update
Each element (normal elements, faceElements, ContactElements and points)
are now assigned a unique global id to streamline per-element
calculations and file IO of element data.

Revision 783 - Directory Listing
Modified Tue Jul 18 01:32:50 2006 UTC (16 years, 8 months ago) by gross

coordinates, element size and normals returned by corresponding
FunctionSpace mesthods are now protected against updates. So 
+=, -=, *=, /=, setTaggedValue, fillFromNumArray will through an
excpetion.

The FunctionSpace class does nut buffer the oordinates, element size and
normals yet.

Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (16 years, 8 months ago) by bcumming

Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.

Revision 781 - Directory Listing
Modified Fri Jul 14 08:47:38 2006 UTC (16 years, 8 months ago) by gross

grad functions linked into the persistent jacobean scheme

Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (16 years, 8 months ago) by woo409

+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows

Revision 777 - Directory Listing
Modified Wed Jul 12 08:54:45 2006 UTC (16 years, 8 months ago) by gross

integration with persistent jacobeans is running now

Revision 776 - Directory Listing
Modified Wed Jul 12 00:07:31 2006 UTC (16 years, 8 months ago) by gross

basic code for persistence of jacobeans added. routines are not called yet

Revision 767 - Directory Listing
Modified Fri Jun 30 07:29:08 2006 UTC (16 years, 8 months ago) by gross

new FunctionSpace method setTags added

Revision 765 - Directory Listing
Modified Fri Jun 30 06:37:11 2006 UTC (16 years, 8 months ago) by gross

The test for the contact normal has been modified to take in cosideration the fact that the normal is unique up to the factor +/-1. 
Now the test checks the kllength of the normal for 1 and the angle to the reference normal.

Revision 763 - Directory Listing
Modified Fri Jun 30 05:52:31 2006 UTC (16 years, 8 months ago) by gross

some modification in the element reordering which should solve some problems 
caused by the fact that qsort may handels == items differently on different platform.

Revision 759 - Directory Listing
Modified Thu Jun 29 01:53:23 2006 UTC (16 years, 8 months ago) by bcumming

- added directory pythonMPI to the source tree. this directory contains
  the c++ wrapper that is used to run python scripts in parallel for the
  MPI version of escript/finley
- updated the SConstruct and ./scons/ess_options.py for conditional MPI
  compilation. To compile the MPI version on ESS uncomment the #define
  PASO_MPI in ./paso/src/Paso.h and add the command line option
  useMPI=yes when running scons.
- fixed a compile time error in the MPI build in  
  finley/src/CPPAdapter/MeshAdapterFactory.cpp

Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (16 years, 8 months ago) by woo409

+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)

Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (16 years, 8 months ago) by bcumming

Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.

Revision 731 - Directory Listing
Modified Mon May 15 04:09:52 2006 UTC (16 years, 10 months ago) by bcumming

Revision 730 - Directory Listing
Modified Mon May 15 04:03:49 2006 UTC (16 years, 10 months ago) by bcumming

Revision 727 - Directory Listing
Modified Fri May 12 06:31:06 2006 UTC (16 years, 10 months ago) by gross

In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (16 years, 11 months ago) by gross

latex build documentation is working now

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (16 years, 11 months ago) by gross

A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.

Revision 687 - Directory Listing
Modified Mon Mar 27 22:17:32 2006 UTC (16 years, 11 months ago) by gross

small fixes

Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (16 years, 11 months ago) by robwdcock

+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3

Revision 626 - Directory Listing
Modified Thu Mar 23 02:16:36 2006 UTC (17 years ago) by elspeth

Copyright information inserted

Revision 618 - Directory Listing
Modified Wed Mar 22 04:02:38 2006 UTC (17 years ago) by gross

mmio moced to paso

Revision 616 - Directory Listing
Modified Wed Mar 22 02:46:56 2006 UTC (17 years ago) by elspeth

Copyright added to more source files.

Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (17 years ago) by gross

eigenvalues: compiles and passes tests on altix now

Revision 552 - Directory Listing
Modified Wed Feb 22 03:18:07 2006 UTC (17 years, 1 month ago) by gross

and more work on saving the element jacobians (please don;t look at the code)

Revision 547 - Directory Listing
Modified Tue Feb 21 06:10:54 2006 UTC (17 years, 1 month ago) by gross

solution and reduced solution can have reference numbers now!

Revision 532 - Directory Listing
Modified Wed Feb 15 09:45:53 2006 UTC (17 years, 1 month ago) by gross

first steps towards the reuse of the element jacobians

Revision 484 - Directory Listing
Modified Thu Feb 2 02:12:08 2006 UTC (17 years, 1 month ago) by jgs

add remainder of includes to SConscript includes install

Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (17 years, 1 month ago) by jgs

add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)

Revision 480 - Directory Listing
Modified Wed Feb 1 05:15:12 2006 UTC (17 years, 1 month ago) by jgs

rationalise #includes and forward declarations

Revision 474 - Directory Listing
Modified Mon Jan 30 04:23:44 2006 UTC (17 years, 1 month ago) by jgs

restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly

Revision 472 - Directory Listing
Modified Fri Jan 27 01:50:59 2006 UTC (17 years, 1 month ago) by jgs

rationalise all #includes

Revision 471 - Directory Listing
Modified Fri Jan 27 01:33:02 2006 UTC (17 years, 1 month ago) by jgs

reorganise finley src tree to remove inc dir and src/finley directory

Revision 468 - Directory Listing
Modified Wed Jan 25 06:50:39 2006 UTC (17 years, 1 month ago) by jgs

reorganised esysUtils to remove inc directory

Revision 467 - Directory Listing
Modified Wed Jan 25 05:43:46 2006 UTC (17 years, 1 month ago) by jgs

adjustments to includes to allow for new paso src tree structure

Revision 449 - Directory Listing
Modified Mon Jan 23 03:48:51 2006 UTC (17 years, 2 months ago) by jgs

finley source directories now merged into one directory: src/finley

Revision 430 - Directory Listing
Modified Wed Jan 11 06:40:50 2006 UTC (17 years, 2 months ago) by gross

ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.

Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (17 years, 2 months ago) by gross

The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings.

Revision 416 - Directory Listing
Modified Wed Jan 4 05:38:35 2006 UTC (17 years, 2 months ago) by gross

changes in Paso have been worked in

Revision 402 - Directory Listing
Modified Thu Dec 22 22:46:54 2005 UTC (17 years, 3 months ago) by gross

cut of for small values

Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (17 years, 3 months ago) by jgs

turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!

Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (17 years, 3 months ago) by jgs

now automatically build unit tests as required based on dependencies
between unit tests and libraries

Revision 277 - Directory Listing
Modified Wed Nov 30 04:52:39 2005 UTC (17 years, 3 months ago) by jgs

explicitly define dependencies between modules

Revision 273 - Directory Listing
Modified Wed Nov 30 03:30:40 2005 UTC (17 years, 3 months ago) by gross

cast to float added. this avoids problems with very small values

Revision 272 - Directory Listing
Modified Wed Nov 30 03:30:30 2005 UTC (17 years, 3 months ago) by gross

cast to float added. this avoids problems with very small coodinates.

Revision 271 - Directory Listing
Modified Wed Nov 30 03:27:30 2005 UTC (17 years, 3 months ago) by gross

cast to float added. this avoids problems with very small values

Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (17 years, 3 months ago) by jgs

pass in cc/cxx settings from config file

Revision 204 - Directory Listing
Modified Wed Nov 23 04:43:51 2005 UTC (17 years, 4 months ago) by jgs

revised scons files to account for new finley source tree structure

Revision 203 - Directory Listing
Modified Wed Nov 23 04:36:15 2005 UTC (17 years, 4 months ago) by jgs

adjust include file names to allow for new finley source tree structure

Revision 202 - Directory Listing
Modified Wed Nov 23 04:18:39 2005 UTC (17 years, 4 months ago) by jgs

scons builds will now take place in parallel "finley" src dir

Revision 201 - Directory Listing
Modified Wed Nov 23 04:10:21 2005 UTC (17 years, 4 months ago) by jgs

copy finleyC and CPPAdapter to finley and finley/CPPAdapter to
facilitate scons builds

Revision 192 - Directory Listing
Modified Mon Nov 21 04:52:14 2005 UTC (17 years, 4 months ago) by jgs

pass in top level install directory for finley/escript/bruce/paso
libraries when building via top level scons script

Revision 191 - Directory Listing
Modified Mon Nov 21 04:10:12 2005 UTC (17 years, 4 months ago) by jgs

push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files

Revision 190 - Directory Listing
Modified Mon Nov 21 03:27:42 2005 UTC (17 years, 4 months ago) by jgs

pass in value for esysroot and use this to determine include file locations

Revision 188 - Directory Listing
Modified Mon Nov 21 01:20:26 2005 UTC (17 years, 4 months ago) by jgs

explicitly add -fpic option to all compiler options lists
to ensure relocatable code is generated

Revision 182 - Directory Listing
Modified Fri Nov 18 05:07:36 2005 UTC (17 years, 4 months ago) by jgs

first draft of config/construct files for finleyC/finleycpp libraries

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (17 years, 4 months ago) by jgs

move all directories from trunk/esys2 into trunk and remove esys2

Revision 153 - Directory Listing
Modified Tue Oct 25 01:51:20 2005 UTC (17 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley/src

Merge of development branch dev-02 back to main trunk on 2005-10-25

Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (17 years, 6 months ago) by jgs
Original Path: trunk/esys2/finley/src

Merge of development branch dev-02 back to main trunk on 2005-09-15

Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (17 years, 6 months ago) by jgs
Original Path: trunk/esys2/finley/src

Merge of development branch dev-02 back to main trunk on 2005-09-01

Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (17 years, 7 months ago) by jgs
Original Path: trunk/esys2/finley/src

Merge of development branch dev-02 back to main trunk on 2005-08-23

Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (17 years, 7 months ago) by jgs
Original Path: trunk/esys2/finley/src

erge of development branch dev-02 back to main trunk on 2005-08-12

Revision 126 - Directory Listing
Modified Fri Jul 22 03:53:08 2005 UTC (17 years, 8 months ago) by jgs
Original Path: trunk/esys2/finley/src

Merge of development branch back to main trunk on 2005-07-22

Revision 123 - Directory Listing
Modified Fri Jul 8 04:08:13 2005 UTC (17 years, 8 months ago) by jgs
Original Path: trunk/esys2/finley/src

Merge of development branch back to main trunk on 2005-07-08

Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (17 years, 9 months ago) by jgs
Original Path: trunk/esys2/finley/src

Merge of development branch back to main trunk on 2005-06-09

Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (17 years, 10 months ago) by jgs
Original Path: trunk/esys2/finley/src

Merge of development branch back to main trunk on 2005-05-06

Revision 117 - Directory Listing
Modified Fri Apr 1 05:48:57 2005 UTC (17 years, 11 months ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 115 - Directory Listing
Modified Fri Mar 4 07:12:47 2005 UTC (18 years ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 113 - Directory Listing
Modified Mon Feb 28 07:06:33 2005 UTC (18 years ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (18 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (18 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (18 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (18 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (18 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (18 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src

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Revision 82 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (18 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley/src

Initial revision

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