/[escript]/trunk/finley/src/CPPAdapter
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Revision 1375 - Directory Listing
Modified Wed Jan 9 00:15:05 2008 UTC (11 years, 11 months ago) by gross 
bug in interpolation at reduced face elements fixed.
Revision 1370 - Directory Listing
Modified Wed Jan 2 09:21:43 2008 UTC (11 years, 11 months ago) by gross 
explicit upwinding scheme added.
Revision 1367 - Directory Listing
Modified Wed Dec 19 02:45:07 2007 UTC (11 years, 11 months ago) by gross 
finley can now assemble a transport problem.
Revision 1366 - Directory Listing
Modified Tue Dec 18 05:49:17 2007 UTC (11 years, 11 months ago) by gross 
finley can create a TransportProblem now
Revision 1365 - Directory Listing
Modified Mon Dec 17 07:28:23 2007 UTC (11 years, 11 months ago) by gross 
some cosmetics.
Revision 1364 - Directory Listing
Modified Mon Dec 17 07:22:45 2007 UTC (11 years, 11 months ago) by gross 
finley interface to paso's transport solver added.
Revision 1361 - Directory Listing
Modified Fri Dec 14 09:26:51 2007 UTC (11 years, 11 months ago) by gross 
first steps towards a flux controlled transport solver.
Revision 1360 - Directory Listing
Modified Thu Dec 13 05:05:00 2007 UTC (11 years, 11 months ago) by ksteube 
Partial implementation of ReadMeshMPI.
Will eventually replace ReadMesh but for now has a different name.
Revision 1347 - Directory Listing
Modified Fri Nov 16 05:37:07 2007 UTC (12 years ago) by ksteube 
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.
Revision 1346 - Directory Listing
Modified Wed Nov 14 22:48:12 2007 UTC (12 years ago) by ksteube 
dump/LoadMesh methods work except for TagMap, Point elements probably OK but are untested.
Revision 1345 - Directory Listing
Modified Wed Nov 14 07:53:34 2007 UTC (12 years ago) by ksteube 
Created LoadMesh to read a mesh from a distributed NetCDF file.
Can read nodes but not elements yet.
Revision 1344 - Directory Listing
Modified Wed Nov 14 04:28:25 2007 UTC (12 years ago) by ksteube 
Now using TMPMEMFREE but still thrashes memory for very large mesh.
Future solution will be to use NetCDF subsetting and less temp memory.
Revision 1343 - Directory Listing
Modified Wed Nov 14 02:48:02 2007 UTC (12 years ago) by ksteube 
First cut implementation of mesh.dump() using NetCDF.  TagMap not
saved yet.  The code for Points probably works but has not been tested.
Revision 1339 - Directory Listing
Modified Wed Nov 7 01:53:12 2007 UTC (12 years, 1 month ago) by ksteube 
Modified scons target release_src to include lib/ and include/ since
their presence is required for a build.  Modified
mydomain.print_mesh_info(True) to include more useful info about a
distributed domain.  Added mypde.getOperator().print_matrix_info(True)
to tell about a distributed matrix.
Revision 1326 - Directory Listing
Modified Mon Oct 1 08:10:41 2007 UTC (12 years, 2 months ago) by ksteube 
Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes.
Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.
Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (12 years, 2 months ago) by ksteube 
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.
Revision 1204 - Directory Listing
Modified Sat Jun 23 11:43:12 2007 UTC (12 years, 5 months ago) by gross 
a frame for an improved lumping procedure added.
Revision 1141 - Directory Listing
Modified Tue May 15 04:24:51 2007 UTC (12 years, 6 months ago) by gross 
Some changes to make things run on windows. There is still a problem with netcdf an long file names on windows but there is the suspicion that this is a bigger problem related to boost (compiler options). In fact runs with large numbers of iteration/time steps tend to create seg faults.
Revision 1137 - Directory Listing
Modified Thu May 10 08:11:31 2007 UTC (12 years, 7 months ago) by gross 
This version passes the tests on windows except for 

   * vtk
   * netCDF

The version needs to be tested on altix and linux
Revision 1116 - Directory Listing
Modified Mon Apr 23 03:36:34 2007 UTC (12 years, 7 months ago) by gross 
Interporpolation from full to reduced integration order added.
Revision 1107 - Directory Listing
Modified Thu Apr 19 02:14:18 2007 UTC (12 years, 7 months ago) by gross 
Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.
Revision 1080 - Directory Listing
Modified Wed Apr 11 06:07:30 2007 UTC (12 years, 8 months ago) by gross 
small typo fixed.
Revision 1064 - Directory Listing
Modified Tue Mar 27 06:21:02 2007 UTC (12 years, 8 months ago) by gross 
test for reduced integration order for grad, interpolate and integrate added.
Bug shown by the tests have been fixed.
Revision 1062 - Directory Listing
Modified Mon Mar 26 06:17:53 2007 UTC (12 years, 8 months ago) by gross 
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.
Revision 1059 - Directory Listing
Modified Fri Mar 23 11:01:53 2007 UTC (12 years, 8 months ago) by gross 
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.
Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (12 years, 8 months ago) by gross 
clear name tagging is supported now.
Revision 1022 - Directory Listing
Modified Tue Mar 13 02:25:53 2007 UTC (12 years, 8 months ago) by phornby 
Now define the destructors for all the Exceptions (sorry guys & gals).
Revision 1020 - Directory Listing
Modified Mon Mar 12 10:12:36 2007 UTC (12 years, 8 months ago) by phornby 
Added explicit destructors to all Exception classes.

Fixed an ifdef in TestCase.cpp

Made the conditional definition of M_PI in LocalOps.h
depend only on M_PI being undefined.

Replace dynamically dimensioned arrays in DataFactory & DataTagged with malloc.

sort() method of list does not take a named argument
(despite the manual's claims to the contary).
Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (12 years, 9 months ago) by ksteube 
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.
Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (12 years, 9 months ago) by ksteube 
Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.
Revision 967 - Directory Listing
Modified Tue Feb 13 09:40:12 2007 UTC (12 years, 9 months ago) by gross 
dump and load of expanded data via netCDF added. some test are still missing.
Revision 964 - Directory Listing
Modified Tue Feb 13 05:10:26 2007 UTC (12 years, 9 months ago) by gross 
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI).
Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will
profit form this at this stage but it will allow a faster dump of data objects.
Revision 934 - Directory Listing
Modified Tue Jan 23 09:52:45 2007 UTC (12 years, 10 months ago) by gross 
gmsh file reader for finley
Revision 888 - Directory Listing
Modified Tue Nov 7 08:31:26 2006 UTC (13 years, 1 month ago) by gross 
Problem in Mesh_findMatchingFaces.c fixed:
default tolerance in python interface was set too tight.
Revision 817 - Directory Listing
Modified Sat Aug 26 03:08:52 2006 UTC (13 years, 3 months ago) by ksteube 
Can now compile and run with MPI on shake71
Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (13 years, 4 months ago) by gross 
Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.
Revision 793 - Directory Listing
Modified Sat Jul 29 19:40:22 2006 UTC (13 years, 4 months ago) by dhawcroft 
Preliminary MPI version of saveVTK. Needs testers. Works for point data and should work for cell centered data.
Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (13 years, 4 months ago) by bcumming 
Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.
Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (13 years, 4 months ago) by woo409 
+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows
Revision 767 - Directory Listing
Modified Fri Jun 30 07:29:08 2006 UTC (13 years, 5 months ago) by gross 
new FunctionSpace method setTags added
Revision 759 - Directory Listing
Modified Thu Jun 29 01:53:23 2006 UTC (13 years, 5 months ago) by bcumming 
- added directory pythonMPI to the source tree. this directory contains
  the c++ wrapper that is used to run python scripts in parallel for the
  MPI version of escript/finley
- updated the SConstruct and ./scons/ess_options.py for conditional MPI
  compilation. To compile the MPI version on ESS uncomment the #define
  PASO_MPI in ./paso/src/Paso.h and add the command line option
  useMPI=yes when running scons.
- fixed a compile time error in the MPI build in  
  finley/src/CPPAdapter/MeshAdapterFactory.cpp
Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (13 years, 5 months ago) by woo409 
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)
Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (13 years, 5 months ago) by bcumming 
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.
Revision 727 - Directory Listing
Modified Fri May 12 06:31:06 2006 UTC (13 years, 6 months ago) by gross 
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.
Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (13 years, 8 months ago) by robwdcock 
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3
Revision 626 - Directory Listing
Modified Thu Mar 23 02:16:36 2006 UTC (13 years, 8 months ago) by elspeth 
Copyright information inserted
Revision 547 - Directory Listing
Modified Tue Feb 21 06:10:54 2006 UTC (13 years, 9 months ago) by gross 
solution and reduced solution can have reference numbers now!
Revision 532 - Directory Listing
Modified Wed Feb 15 09:45:53 2006 UTC (13 years, 9 months ago) by gross 
first steps towards the reuse of the element jacobians
Revision 480 - Directory Listing
Modified Wed Feb 1 05:15:12 2006 UTC (13 years, 10 months ago) by jgs 
rationalise #includes and forward declarations
Revision 474 - Directory Listing
Modified Mon Jan 30 04:23:44 2006 UTC (13 years, 10 months ago) by jgs 
restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly
Revision 472 - Directory Listing
Modified Fri Jan 27 01:50:59 2006 UTC (13 years, 10 months ago) by jgs 
rationalise all #includes
Revision 471 - Directory Listing
Modified Fri Jan 27 01:33:02 2006 UTC (13 years, 10 months ago) by jgs
Copied from: trunk/finley/src/finley/CPPAdapter revision 469 
reorganise finley src tree to remove inc dir and src/finley directory
Revision 468 - Directory Listing
Modified Wed Jan 25 06:50:39 2006 UTC (13 years, 10 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter 
reorganised esysUtils to remove inc directory
Revision 467 - Directory Listing
Modified Wed Jan 25 05:43:46 2006 UTC (13 years, 10 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter 
adjustments to includes to allow for new paso src tree structure
Revision 430 - Directory Listing
Modified Wed Jan 11 06:40:50 2006 UTC (13 years, 10 months ago) by gross
Original Path: trunk/finley/src/finley/CPPAdapter 
ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.
Revision 203 - Directory Listing
Modified Wed Nov 23 04:36:15 2005 UTC (14 years ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter 
adjust include file names to allow for new finley source tree structure
Revision 201 - Directory Listing
Modified Wed Nov 23 04:10:21 2005 UTC (14 years ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter
Copied from: trunk/finley/src/CPPAdapter revision 175 
copy finleyC and CPPAdapter to finley and finley/CPPAdapter to
facilitate scons builds
Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (14 years, 1 month ago) by jgs 
move all directories from trunk/esys2 into trunk and remove esys2
Revision 153 - Directory Listing
Modified Tue Oct 25 01:51:20 2005 UTC (14 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
Merge of development branch dev-02 back to main trunk on 2005-10-25
Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (14 years, 2 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
Merge of development branch dev-02 back to main trunk on 2005-09-15
Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
Merge of development branch dev-02 back to main trunk on 2005-09-01
Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
Merge of development branch dev-02 back to main trunk on 2005-08-23
Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
erge of development branch dev-02 back to main trunk on 2005-08-12
Revision 123 - Directory Listing
Modified Fri Jul 8 04:08:13 2005 UTC (14 years, 5 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
Merge of development branch back to main trunk on 2005-07-08
Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (14 years, 7 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
Merge of development branch back to main trunk on 2005-05-06
Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (14 years, 9 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
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Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (14 years, 10 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
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Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (14 years, 11 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
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Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (14 years, 11 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
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Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (14 years, 11 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
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Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (14 years, 11 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
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Revision 82 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter 
Initial revision
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