/[escript]/trunk/finley/src/CPPAdapter/MeshAdapter.cpp
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Annotation of /trunk/finley/src/CPPAdapter/MeshAdapter.cpp

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Revision 1347 - (hide annotations)
Fri Nov 16 05:37:07 2007 UTC (11 years, 6 months ago) by ksteube
File size: 82429 byte(s)
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.

1 jgs 472
2 ksteube 1312 /* $Id$ */
3    
4     /*******************************************************
5     *
6     * Copyright 2003-2007 by ACceSS MNRF
7     * Copyright 2007 by University of Queensland
8     *
9     * http://esscc.uq.edu.au
10     * Primary Business: Queensland, Australia
11     * Licensed under the Open Software License version 3.0
12     * http://www.opensource.org/licenses/osl-3.0.php
13     *
14     *******************************************************/
15    
16 jgs 203 #include "MeshAdapter.h"
17 robwdcock 682 #include "escript/Data.h"
18     #include "escript/DataFactory.h"
19 ksteube 1343 #ifdef USE_NETCDF
20     #include <netcdfcpp.h>
21     #endif
22 ksteube 1312 extern "C" {
23     #include "escript/blocktimer.h"
24     }
25     #include <vector>
26 jgs 480
27 jgs 82 using namespace std;
28     using namespace escript;
29    
30     namespace finley {
31 jgs 149
32 jgs 82 //
33 jgs 149 // define the static constants
34 jgs 82 MeshAdapter::FunctionSpaceNamesMapType MeshAdapter::m_functionSpaceTypeNames;
35     const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM;
36     const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM;
37     const int MeshAdapter::Nodes=FINLEY_NODES;
38 gross 1062 const int MeshAdapter::ReducedNodes=FINLEY_REDUCED_NODES;
39 jgs 82 const int MeshAdapter::Elements=FINLEY_ELEMENTS;
40 gross 1059 const int MeshAdapter::ReducedElements=FINLEY_REDUCED_ELEMENTS;
41 jgs 82 const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS;
42 gross 1059 const int MeshAdapter::ReducedFaceElements=FINLEY_REDUCED_FACE_ELEMENTS;
43 jgs 82 const int MeshAdapter::Points=FINLEY_POINTS;
44     const int MeshAdapter::ContactElementsZero=FINLEY_CONTACT_ELEMENTS_1;
45 gross 1059 const int MeshAdapter::ReducedContactElementsZero=FINLEY_REDUCED_CONTACT_ELEMENTS_1;
46 jgs 82 const int MeshAdapter::ContactElementsOne=FINLEY_CONTACT_ELEMENTS_2;
47 gross 1059 const int MeshAdapter::ReducedContactElementsOne=FINLEY_REDUCED_CONTACT_ELEMENTS_2;
48 jgs 82
49     MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh)
50     {
51     setFunctionSpaceTypeNames();
52     //
53 ksteube 1312 // need to use a null_deleter as Finley_Mesh_free deletes the pointer
54 jgs 82 // for us.
55     m_finleyMesh.reset(finleyMesh,null_deleter());
56     }
57 jgs 149
58 jgs 82 //
59     // The copy constructor should just increment the use count
60     MeshAdapter::MeshAdapter(const MeshAdapter& in):
61     m_finleyMesh(in.m_finleyMesh)
62     {
63     setFunctionSpaceTypeNames();
64     }
65    
66     MeshAdapter::~MeshAdapter()
67     {
68     //
69     // I hope the case for the pointer being zero has been taken care of.
70     // cout << "In MeshAdapter destructor." << endl;
71     if (m_finleyMesh.unique()) {
72 ksteube 1312 Finley_Mesh_free(m_finleyMesh.get());
73 jgs 82 }
74     }
75    
76 ksteube 1312 int MeshAdapter::getMPISize() const
77     {
78     return m_finleyMesh.get()->MPIInfo->size;
79     }
80     int MeshAdapter::getMPIRank() const
81     {
82     return m_finleyMesh.get()->MPIInfo->rank;
83     }
84    
85    
86 jgs 82 Finley_Mesh* MeshAdapter::getFinley_Mesh() const {
87     return m_finleyMesh.get();
88     }
89    
90     void MeshAdapter::write(const std::string& fileName) const
91     {
92 woo409 757 char *fName = (fileName.size()+1>0) ? TMPMEMALLOC(fileName.size()+1,char) : (char*)NULL;
93 jgs 82 strcpy(fName,fileName.c_str());
94     Finley_Mesh_write(m_finleyMesh.get(),fName);
95     checkFinleyError();
96 woo409 757 TMPMEMFREE(fName);
97 jgs 82 }
98    
99 ksteube 1339 void MeshAdapter::Print_Mesh_Info(const bool full=false) const
100 ksteube 1326 {
101 ksteube 1339 Finley_PrintMesh_Info(m_finleyMesh.get(), full);
102 ksteube 1326 }
103    
104 ksteube 1312 void MeshAdapter::dump(const std::string& fileName) const
105     {
106 ksteube 1343 #ifdef USE_NETCDF
107 ksteube 1347 const NcDim* ncdims[12];
108 ksteube 1343 NcVar *ids, *data;
109     int *int_ptr;
110     Finley_Mesh *mesh = m_finleyMesh.get();
111 ksteube 1347 Finley_TagMap* tag_map;
112     int num_Tags = 0;
113 ksteube 1343 int mpi_size = mesh->MPIInfo->size;
114     int mpi_rank = mesh->MPIInfo->rank;
115     int numDim = mesh->Nodes->numDim;
116     int numNodes = mesh->Nodes->numNodes;
117     int num_Elements = mesh->Elements->numElements;
118     int num_FaceElements = mesh->FaceElements->numElements;
119     int num_ContactElements = mesh->ContactElements->numElements;
120     int num_Points = mesh->Points->numElements;
121     int num_Elements_numNodes = mesh->Elements->numNodes;
122     int num_FaceElements_numNodes = mesh->FaceElements->numNodes;
123     int num_ContactElements_numNodes = mesh->ContactElements->numNodes;
124     char *newFileName = Paso_MPI_appendRankToFileName(strdup(fileName.c_str()), mpi_size, mpi_rank);
125    
126 ksteube 1347 /* Figure out how much storage is required for tags */
127     tag_map = mesh->TagMap;
128     if (tag_map) {
129     while (tag_map) {
130     num_Tags++;
131     tag_map=tag_map->next;
132     }
133     }
134    
135 ksteube 1343 // NetCDF error handler
136     NcError err(NcError::verbose_nonfatal);
137     // Create the file.
138     NcFile dataFile(newFileName, NcFile::Replace);
139     // check if writing was successful
140     if (!dataFile.is_valid())
141     throw DataException("Error - MeshAdapter::dump: opening of NetCDF file for output failed: " + *newFileName);
142    
143     // Define dimensions (num_Elements and dim_Elements are identical, dim_Elements only appears if > 0)
144     if (! (ncdims[0] = dataFile.add_dim("numNodes", numNodes)) )
145     throw DataException("Error - MeshAdapter::dump: appending dimension numNodes to netCDF file failed: " + *newFileName);
146     if (! (ncdims[1] = dataFile.add_dim("numDim", numDim)) )
147     throw DataException("Error - MeshAdapter::dump: appending dimension numDim to netCDF file failed: " + *newFileName);
148     if (! (ncdims[2] = dataFile.add_dim("mpi_size_plus_1", mpi_size+1)) )
149     throw DataException("Error - MeshAdapter::dump: appending dimension mpi_size to netCDF file failed: " + *newFileName);
150     if (num_Elements>0)
151     if (! (ncdims[3] = dataFile.add_dim("dim_Elements", num_Elements)) )
152     throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements to netCDF file failed: " + *newFileName);
153     if (num_FaceElements>0)
154     if (! (ncdims[4] = dataFile.add_dim("dim_FaceElements", num_FaceElements)) )
155     throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements to netCDF file failed: " + *newFileName);
156     if (num_ContactElements>0)
157     if (! (ncdims[5] = dataFile.add_dim("dim_ContactElements", num_ContactElements)) )
158     throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements to netCDF file failed: " + *newFileName);
159     if (num_Points>0)
160     if (! (ncdims[6] = dataFile.add_dim("dim_Points", num_Points)) )
161     throw DataException("Error - MeshAdapter::dump: appending dimension dim_Points to netCDF file failed: " + *newFileName);
162     if (num_Elements>0)
163     if (! (ncdims[7] = dataFile.add_dim("dim_Elements_Nodes", num_Elements_numNodes)) )
164     throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements_Nodes to netCDF file failed: " + *newFileName);
165     if (num_FaceElements>0)
166     if (! (ncdims[8] = dataFile.add_dim("dim_FaceElements_numNodes", num_FaceElements_numNodes)) )
167     throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements_numNodes to netCDF file failed: " + *newFileName);
168     if (num_ContactElements>0)
169     if (! (ncdims[9] = dataFile.add_dim("dim_ContactElements_numNodes", num_ContactElements_numNodes)) )
170     throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements_numNodes to netCDF file failed: " + *newFileName);
171 ksteube 1347 if (num_Tags>0)
172     if (! (ncdims[10] = dataFile.add_dim("dim_Tags", num_Tags)) )
173     throw DataException("Error - MeshAdapter::dump: appending dimension dim_Tags to netCDF file failed: " + *newFileName);
174 ksteube 1343
175 ksteube 1345 // Attributes: MPI size, MPI rank, Name, order, reduced_order
176 ksteube 1343 if (!dataFile.add_att("mpi_size", mpi_size) )
177     throw DataException("Error - MeshAdapter::dump: appending mpi_size to NetCDF file failed: " + *newFileName);
178     if (!dataFile.add_att("mpi_rank", mpi_rank) )
179     throw DataException("Error - MeshAdapter::dump: appending mpi_rank to NetCDF file failed: " + *newFileName);
180     if (!dataFile.add_att("Name",mesh->Name) )
181     throw DataException("Error - MeshAdapter::dump: appending Name to NetCDF file failed: " + *newFileName);
182 ksteube 1345 if (!dataFile.add_att("numDim",numDim) )
183     throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
184 ksteube 1343 if (!dataFile.add_att("order",mesh->order) )
185     throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
186     if (!dataFile.add_att("reduced_order",mesh->reduced_order) )
187     throw DataException("Error - MeshAdapter::dump: appending reduced_order to NetCDF file failed: " + *newFileName);
188 ksteube 1345 if (!dataFile.add_att("numNodes",numNodes) )
189     throw DataException("Error - MeshAdapter::dump: appending numNodes to NetCDF file failed: " + *newFileName);
190 ksteube 1343 if (!dataFile.add_att("num_Elements",num_Elements) )
191     throw DataException("Error - MeshAdapter::dump: appending num_Elements to NetCDF file failed: " + *newFileName);
192     if (!dataFile.add_att("num_FaceElements",num_FaceElements) )
193     throw DataException("Error - MeshAdapter::dump: appending num_FaceElements to NetCDF file failed: " + *newFileName);
194     if (!dataFile.add_att("num_ContactElements",num_ContactElements) )
195     throw DataException("Error - MeshAdapter::dump: appending num_ContactElements to NetCDF file failed: " + *newFileName);
196     if (!dataFile.add_att("num_Points",num_Points) )
197     throw DataException("Error - MeshAdapter::dump: appending num_Points to NetCDF file failed: " + *newFileName);
198 ksteube 1346 if (!dataFile.add_att("num_Elements_numNodes",num_Elements_numNodes) )
199     throw DataException("Error - MeshAdapter::dump: appending num_Elements_numNodes to NetCDF file failed: " + *newFileName);
200     if (!dataFile.add_att("num_FaceElements_numNodes",num_FaceElements_numNodes) )
201     throw DataException("Error - MeshAdapter::dump: appending num_FaceElements_numNodes to NetCDF file failed: " + *newFileName);
202     if (!dataFile.add_att("num_ContactElements_numNodes",num_ContactElements_numNodes) )
203     throw DataException("Error - MeshAdapter::dump: appending num_ContactElements_numNodes to NetCDF file failed: " + *newFileName);
204 ksteube 1347 if (!dataFile.add_att("Elements_TypeId", mesh->Elements->ReferenceElement->Type->TypeId) )
205     throw DataException("Error - MeshAdapter::dump: appending Elements_TypeId to NetCDF file failed: " + *newFileName);
206     if (!dataFile.add_att("FaceElements_TypeId", mesh->FaceElements->ReferenceElement->Type->TypeId) )
207     throw DataException("Error - MeshAdapter::dump: appending FaceElements_TypeId to NetCDF file failed: " + *newFileName);
208     if (!dataFile.add_att("ContactElements_TypeId", mesh->ContactElements->ReferenceElement->Type->TypeId) )
209     throw DataException("Error - MeshAdapter::dump: appending ContactElements_TypeId to NetCDF file failed: " + *newFileName);
210     if (!dataFile.add_att("Points_TypeId", mesh->Points->ReferenceElement->Type->TypeId) )
211     throw DataException("Error - MeshAdapter::dump: appending Points_TypeId to NetCDF file failed: " + *newFileName);
212     if (!dataFile.add_att("num_Tags", num_Tags) )
213     throw DataException("Error - MeshAdapter::dump: appending num_Tags to NetCDF file failed: " + *newFileName);
214 ksteube 1343
215     // // // // // Nodes // // // // //
216    
217 ksteube 1345 // Only write nodes if non-empty because NetCDF doesn't like empty arrays (it treats them as NC_UNLIMITED)
218     if (numNodes>0) {
219    
220 ksteube 1343 // Nodes Id
221     if (! ( ids = dataFile.add_var("Nodes_Id", ncInt, ncdims[0])) )
222     throw DataException("Error - MeshAdapter::dump: appending Nodes_Id to netCDF file failed: " + *newFileName);
223     int_ptr = &mesh->Nodes->Id[0];
224     if (! (ids->put(int_ptr, numNodes)) )
225     throw DataException("Error - MeshAdapter::dump: copy Nodes_Id to netCDF buffer failed: " + *newFileName);
226    
227     // Nodes Tag
228     if (! ( ids = dataFile.add_var("Nodes_Tag", ncInt, ncdims[0])) )
229     throw DataException("Error - MeshAdapter::dump: appending Nodes_Tag to netCDF file failed: " + *newFileName);
230     int_ptr = &mesh->Nodes->Tag[0];
231     if (! (ids->put(int_ptr, numNodes)) )
232     throw DataException("Error - MeshAdapter::dump: copy Nodes_Tag to netCDF buffer failed: " + *newFileName);
233    
234     // Nodes gDOF
235     if (! ( ids = dataFile.add_var("Nodes_gDOF", ncInt, ncdims[0])) )
236     throw DataException("Error - MeshAdapter::dump: appending Nodes_gDOF to netCDF file failed: " + *newFileName);
237     int_ptr = &mesh->Nodes->globalDegreesOfFreedom[0];
238     if (! (ids->put(int_ptr, numNodes)) )
239     throw DataException("Error - MeshAdapter::dump: copy Nodes_gDOF to netCDF buffer failed: " + *newFileName);
240    
241     // Nodes global node index
242     if (! ( ids = dataFile.add_var("Nodes_gNI", ncInt, ncdims[0])) )
243     throw DataException("Error - MeshAdapter::dump: appending Nodes_gNI to netCDF file failed: " + *newFileName);
244     int_ptr = &mesh->Nodes->globalNodesIndex[0];
245     if (! (ids->put(int_ptr, numNodes)) )
246     throw DataException("Error - MeshAdapter::dump: copy Nodes_gNI to netCDF buffer failed: " + *newFileName);
247    
248     // Nodes grDof
249     if (! ( ids = dataFile.add_var("Nodes_grDfI", ncInt, ncdims[0])) )
250     throw DataException("Error - MeshAdapter::dump: appending Nodes_grDfI to netCDF file failed: " + *newFileName);
251     int_ptr = &mesh->Nodes->globalReducedDOFIndex[0];
252     if (! (ids->put(int_ptr, numNodes)) )
253     throw DataException("Error - MeshAdapter::dump: copy Nodes_grDfI to netCDF buffer failed: " + *newFileName);
254    
255     // Nodes grNI
256     if (! ( ids = dataFile.add_var("Nodes_grNI", ncInt, ncdims[0])) )
257     throw DataException("Error - MeshAdapter::dump: appending Nodes_grNI to netCDF file failed: " + *newFileName);
258     int_ptr = &mesh->Nodes->globalReducedNodesIndex[0];
259     if (! (ids->put(int_ptr, numNodes)) )
260     throw DataException("Error - MeshAdapter::dump: copy Nodes_grNI to netCDF buffer failed: " + *newFileName);
261    
262     // Nodes Coordinates
263     if (! ( ids = dataFile.add_var("Nodes_Coordinates", ncDouble, ncdims[0], ncdims[1]) ) )
264     throw DataException("Error - MeshAdapter::dump: appending Nodes_Coordinates to netCDF file failed: " + *newFileName);
265     if (! (ids->put(&(mesh->Nodes->Coordinates[INDEX2(0,0,numDim)]), numNodes, numDim)) )
266     throw DataException("Error - MeshAdapter::dump: copy Nodes_Coordinates to netCDF buffer failed: " + *newFileName);
267    
268     // Nodes degreesOfFreedomDistribution
269     if (! ( ids = dataFile.add_var("Nodes_DofDistribution", ncInt, ncdims[2])) )
270     throw DataException("Error - MeshAdapter::dump: appending Nodes_DofDistribution to netCDF file failed: " + *newFileName);
271     int_ptr = &mesh->Nodes->degreesOfFreedomDistribution->first_component[0];
272     if (! (ids->put(int_ptr, mpi_size+1)) )
273     throw DataException("Error - MeshAdapter::dump: copy Nodes_DofDistribution to netCDF buffer failed: " + *newFileName);
274    
275 ksteube 1345 }
276    
277 ksteube 1343 // // // // // Elements // // // // //
278    
279     if (num_Elements>0) {
280    
281     // Temp storage to gather node IDs
282     int *Elements_Nodes = TMPMEMALLOC(num_Elements*num_Elements_numNodes,int);
283    
284     // Elements_Id
285     if (! ( ids = dataFile.add_var("Elements_Id", ncInt, ncdims[3])) )
286     throw DataException("Error - MeshAdapter::dump: appending Elements_Id to netCDF file failed: " + *newFileName);
287     int_ptr = &mesh->Elements->Id[0];
288     if (! (ids->put(int_ptr, num_Elements)) )
289     throw DataException("Error - MeshAdapter::dump: copy Elements_Id to netCDF buffer failed: " + *newFileName);
290    
291     // Elements_Tag
292     if (! ( ids = dataFile.add_var("Elements_Tag", ncInt, ncdims[3])) )
293     throw DataException("Error - MeshAdapter::dump: appending Elements_Tag to netCDF file failed: " + *newFileName);
294     int_ptr = &mesh->Elements->Tag[0];
295     if (! (ids->put(int_ptr, num_Elements)) )
296     throw DataException("Error - MeshAdapter::dump: copy Elements_Tag to netCDF buffer failed: " + *newFileName);
297    
298     // Elements_Owner
299     if (! ( ids = dataFile.add_var("Elements_Owner", ncInt, ncdims[3])) )
300     throw DataException("Error - MeshAdapter::dump: appending Elements_Owner to netCDF file failed: " + *newFileName);
301     int_ptr = &mesh->Elements->Owner[0];
302     if (! (ids->put(int_ptr, num_Elements)) )
303     throw DataException("Error - MeshAdapter::dump: copy Elements_Owner to netCDF buffer failed: " + *newFileName);
304    
305     // Elements_Color
306     if (! ( ids = dataFile.add_var("Elements_Color", ncInt, ncdims[3])) )
307     throw DataException("Error - MeshAdapter::dump: appending Elements_Color to netCDF file failed: " + *newFileName);
308     int_ptr = &mesh->Elements->Color[0];
309     if (! (ids->put(int_ptr, num_Elements)) )
310     throw DataException("Error - MeshAdapter::dump: copy Elements_Color to netCDF buffer failed: " + *newFileName);
311    
312     // Elements_Nodes
313     for (int i=0; i<num_Elements; i++)
314     for (int j=0; j<num_Elements_numNodes; j++)
315     Elements_Nodes[INDEX2(j,i,num_Elements_numNodes)] = mesh->Nodes->Id[mesh->Elements->Nodes[INDEX2(j,i,num_Elements_numNodes)]];
316     if (! ( ids = dataFile.add_var("Elements_Nodes", ncInt, ncdims[3], ncdims[7]) ) )
317     throw DataException("Error - MeshAdapter::dump: appending Elements_Nodes to netCDF file failed: " + *newFileName);
318     if (! (ids->put(&(Elements_Nodes[0]), num_Elements, num_Elements_numNodes)) )
319     throw DataException("Error - MeshAdapter::dump: copy Elements_Nodes to netCDF buffer failed: " + *newFileName);
320    
321 ksteube 1344 TMPMEMFREE(Elements_Nodes);
322    
323 ksteube 1343 }
324    
325     // // // // // Face_Elements // // // // //
326    
327     if (num_FaceElements>0) {
328    
329     // Temp storage to gather node IDs
330     int *FaceElements_Nodes = TMPMEMALLOC(num_FaceElements*num_FaceElements_numNodes,int);
331    
332     // FaceElements_Id
333     if (! ( ids = dataFile.add_var("FaceElements_Id", ncInt, ncdims[4])) )
334     throw DataException("Error - MeshAdapter::dump: appending FaceElements_Id to netCDF file failed: " + *newFileName);
335     int_ptr = &mesh->FaceElements->Id[0];
336     if (! (ids->put(int_ptr, num_FaceElements)) )
337     throw DataException("Error - MeshAdapter::dump: copy FaceElements_Id to netCDF buffer failed: " + *newFileName);
338    
339     // FaceElements_Tag
340     if (! ( ids = dataFile.add_var("FaceElements_Tag", ncInt, ncdims[4])) )
341     throw DataException("Error - MeshAdapter::dump: appending FaceElements_Tag to netCDF file failed: " + *newFileName);
342     int_ptr = &mesh->FaceElements->Tag[0];
343     if (! (ids->put(int_ptr, num_FaceElements)) )
344     throw DataException("Error - MeshAdapter::dump: copy FaceElements_Tag to netCDF buffer failed: " + *newFileName);
345    
346     // FaceElements_Owner
347     if (! ( ids = dataFile.add_var("FaceElements_Owner", ncInt, ncdims[4])) )
348     throw DataException("Error - MeshAdapter::dump: appending FaceElements_Owner to netCDF file failed: " + *newFileName);
349     int_ptr = &mesh->FaceElements->Owner[0];
350     if (! (ids->put(int_ptr, num_FaceElements)) )
351     throw DataException("Error - MeshAdapter::dump: copy FaceElements_Owner to netCDF buffer failed: " + *newFileName);
352    
353     // FaceElements_Color
354     if (! ( ids = dataFile.add_var("FaceElements_Color", ncInt, ncdims[4])) )
355     throw DataException("Error - MeshAdapter::dump: appending FaceElements_Color to netCDF file failed: " + *newFileName);
356     int_ptr = &mesh->FaceElements->Color[0];
357     if (! (ids->put(int_ptr, num_FaceElements)) )
358     throw DataException("Error - MeshAdapter::dump: copy FaceElements_Color to netCDF buffer failed: " + *newFileName);
359    
360     // FaceElements_Nodes
361     for (int i=0; i<num_FaceElements; i++)
362     for (int j=0; j<num_FaceElements_numNodes; j++)
363     FaceElements_Nodes[INDEX2(j,i,num_FaceElements_numNodes)] = mesh->Nodes->Id[mesh->FaceElements->Nodes[INDEX2(j,i,num_FaceElements_numNodes)]];
364     if (! ( ids = dataFile.add_var("FaceElements_Nodes", ncInt, ncdims[4], ncdims[8]) ) )
365     throw DataException("Error - MeshAdapter::dump: appending FaceElements_Nodes to netCDF file failed: " + *newFileName);
366     if (! (ids->put(&(FaceElements_Nodes[0]), num_FaceElements, num_FaceElements_numNodes)) )
367     throw DataException("Error - MeshAdapter::dump: copy FaceElements_Nodes to netCDF buffer failed: " + *newFileName);
368    
369 ksteube 1344 TMPMEMFREE(FaceElements_Nodes);
370    
371 ksteube 1343 }
372    
373     // // // // // Contact_Elements // // // // //
374    
375     if (num_ContactElements>0) {
376    
377     // Temp storage to gather node IDs
378     int *ContactElements_Nodes = TMPMEMALLOC(num_ContactElements*num_ContactElements_numNodes,int);
379    
380     // ContactElements_Id
381     if (! ( ids = dataFile.add_var("ContactElements_Id", ncInt, ncdims[5])) )
382     throw DataException("Error - MeshAdapter::dump: appending ContactElements_Id to netCDF file failed: " + *newFileName);
383     int_ptr = &mesh->ContactElements->Id[0];
384     if (! (ids->put(int_ptr, num_ContactElements)) )
385     throw DataException("Error - MeshAdapter::dump: copy ContactElements_Id to netCDF buffer failed: " + *newFileName);
386    
387     // ContactElements_Tag
388     if (! ( ids = dataFile.add_var("ContactElements_Tag", ncInt, ncdims[5])) )
389     throw DataException("Error - MeshAdapter::dump: appending ContactElements_Tag to netCDF file failed: " + *newFileName);
390     int_ptr = &mesh->ContactElements->Tag[0];
391     if (! (ids->put(int_ptr, num_ContactElements)) )
392     throw DataException("Error - MeshAdapter::dump: copy ContactElements_Tag to netCDF buffer failed: " + *newFileName);
393    
394     // ContactElements_Owner
395     if (! ( ids = dataFile.add_var("ContactElements_Owner", ncInt, ncdims[5])) )
396     throw DataException("Error - MeshAdapter::dump: appending ContactElements_Owner to netCDF file failed: " + *newFileName);
397     int_ptr = &mesh->ContactElements->Owner[0];
398     if (! (ids->put(int_ptr, num_ContactElements)) )
399     throw DataException("Error - MeshAdapter::dump: copy ContactElements_Owner to netCDF buffer failed: " + *newFileName);
400    
401     // ContactElements_Color
402     if (! ( ids = dataFile.add_var("ContactElements_Color", ncInt, ncdims[5])) )
403     throw DataException("Error - MeshAdapter::dump: appending ContactElements_Color to netCDF file failed: " + *newFileName);
404     int_ptr = &mesh->ContactElements->Color[0];
405     if (! (ids->put(int_ptr, num_ContactElements)) )
406     throw DataException("Error - MeshAdapter::dump: copy ContactElements_Color to netCDF buffer failed: " + *newFileName);
407    
408     // ContactElements_Nodes
409     for (int i=0; i<num_ContactElements; i++)
410     for (int j=0; j<num_ContactElements_numNodes; j++)
411     ContactElements_Nodes[INDEX2(j,i,num_ContactElements_numNodes)] = mesh->Nodes->Id[mesh->ContactElements->Nodes[INDEX2(j,i,num_ContactElements_numNodes)]];
412     if (! ( ids = dataFile.add_var("ContactElements_Nodes", ncInt, ncdims[5], ncdims[9]) ) )
413     throw DataException("Error - MeshAdapter::dump: appending ContactElements_Nodes to netCDF file failed: " + *newFileName);
414     if (! (ids->put(&(ContactElements_Nodes[0]), num_ContactElements, num_ContactElements_numNodes)) )
415     throw DataException("Error - MeshAdapter::dump: copy ContactElements_Nodes to netCDF buffer failed: " + *newFileName);
416    
417 ksteube 1344 TMPMEMFREE(ContactElements_Nodes);
418    
419 ksteube 1343 }
420    
421     // // // // // Points // // // // //
422    
423     if (num_Points>0) {
424    
425     fprintf(stderr, "\n\n\nWARNING: MeshAdapter::dump has not been tested with Point elements\n\n\n");
426    
427     // Temp storage to gather node IDs
428     int *Points_Nodes = TMPMEMALLOC(num_Points,int);
429    
430     // Points_Id
431     if (! ( ids = dataFile.add_var("Points_Id", ncInt, ncdims[6])) )
432     throw DataException("Error - MeshAdapter::dump: appending Points_Id to netCDF file failed: " + *newFileName);
433     int_ptr = &mesh->Points->Id[0];
434     if (! (ids->put(int_ptr, num_Points)) )
435     throw DataException("Error - MeshAdapter::dump: copy Points_Id to netCDF buffer failed: " + *newFileName);
436    
437     // Points_Tag
438     if (! ( ids = dataFile.add_var("Points_Tag", ncInt, ncdims[6])) )
439     throw DataException("Error - MeshAdapter::dump: appending Points_Tag to netCDF file failed: " + *newFileName);
440     int_ptr = &mesh->Points->Tag[0];
441     if (! (ids->put(int_ptr, num_Points)) )
442     throw DataException("Error - MeshAdapter::dump: copy Points_Tag to netCDF buffer failed: " + *newFileName);
443    
444     // Points_Owner
445     if (! ( ids = dataFile.add_var("Points_Owner", ncInt, ncdims[6])) )
446     throw DataException("Error - MeshAdapter::dump: appending Points_Owner to netCDF file failed: " + *newFileName);
447     int_ptr = &mesh->Points->Owner[0];
448     if (! (ids->put(int_ptr, num_Points)) )
449     throw DataException("Error - MeshAdapter::dump: copy Points_Owner to netCDF buffer failed: " + *newFileName);
450    
451     // Points_Color
452     if (! ( ids = dataFile.add_var("Points_Color", ncInt, ncdims[6])) )
453     throw DataException("Error - MeshAdapter::dump: appending Points_Color to netCDF file failed: " + *newFileName);
454     int_ptr = &mesh->Points->Color[0];
455     if (! (ids->put(int_ptr, num_Points)) )
456     throw DataException("Error - MeshAdapter::dump: copy Points_Color to netCDF buffer failed: " + *newFileName);
457    
458     // Points_Nodes
459     // mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]]
460     for (int i=0; i<num_Points; i++)
461     Points_Nodes[i] = mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]];
462     if (! ( ids = dataFile.add_var("Points_Nodes", ncInt, ncdims[6]) ) )
463     throw DataException("Error - MeshAdapter::dump: appending Points_Nodes to netCDF file failed: " + *newFileName);
464     if (! (ids->put(&(Points_Nodes[0]), num_Points)) )
465     throw DataException("Error - MeshAdapter::dump: copy Points_Nodes to netCDF buffer failed: " + *newFileName);
466    
467 ksteube 1344 TMPMEMFREE(Points_Nodes);
468    
469 ksteube 1343 }
470    
471     // // // // // TagMap // // // // //
472    
473 ksteube 1347 if (num_Tags>0) {
474 ksteube 1343
475 ksteube 1347 // Temp storage to gather node IDs
476     int *Tags_keys = TMPMEMALLOC(num_Tags, int);
477     char name_temp[4096];
478    
479     /* Copy tag data into temp arrays */
480     tag_map = mesh->TagMap;
481     if (tag_map) {
482     int i = 0;
483     while (tag_map) {
484     Tags_keys[i++] = tag_map->tag_key;
485     tag_map=tag_map->next;
486     }
487     }
488    
489     // Tags_keys
490     if (! ( ids = dataFile.add_var("Tags_keys", ncInt, ncdims[10])) )
491     throw DataException("Error - MeshAdapter::dump: appending Tags_keys to netCDF file failed: " + *newFileName);
492     int_ptr = &Tags_keys[0];
493     if (! (ids->put(int_ptr, num_Tags)) )
494     throw DataException("Error - MeshAdapter::dump: copy Tags_keys to netCDF buffer failed: " + *newFileName);
495    
496     // Tags_names_*
497     // This is an array of strings, it should be stored as an array but instead I have hacked in one attribute per string
498     // because the NetCDF manual doesn't tell how to do an array of strings
499     tag_map = mesh->TagMap;
500     if (tag_map) {
501     int i = 0;
502     while (tag_map) {
503     sprintf(name_temp, "Tags_name_%d", i);
504     if (!dataFile.add_att(name_temp, tag_map->name) )
505     throw DataException("Error - MeshAdapter::dump: appending Tags_names_ to NetCDF file failed: " + *newFileName);
506     tag_map=tag_map->next;
507     i++;
508     }
509     }
510    
511     TMPMEMFREE(Tags_keys);
512    
513     }
514    
515    
516 ksteube 1343 // NetCDF file is closed by destructor of NcFile object
517     #else
518     Finley_setError(IO_ERROR, "MeshAdapter::dump: not configured with NetCDF. Please contact your installation manager.");
519     #endif /* USE_NETCDF */
520     checkFinleyError();
521 ksteube 1312 }
522    
523 jgs 82 string MeshAdapter::getDescription() const
524     {
525 ksteube 1312 return "FinleyMesh";
526 jgs 82 }
527    
528     string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const
529     {
530     FunctionSpaceNamesMapType::iterator loc;
531     loc=m_functionSpaceTypeNames.find(functionSpaceType);
532     if (loc==m_functionSpaceTypeNames.end()) {
533     return "Invalid function space type code.";
534     } else {
535 ksteube 1312 return loc->second;
536 jgs 82 }
537     }
538    
539     bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const
540     {
541     FunctionSpaceNamesMapType::iterator loc;
542     loc=m_functionSpaceTypeNames.find(functionSpaceType);
543     return (loc!=m_functionSpaceTypeNames.end());
544     }
545    
546     void MeshAdapter::setFunctionSpaceTypeNames()
547     {
548     m_functionSpaceTypeNames.insert
549     (FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom"));
550     m_functionSpaceTypeNames.insert
551     (FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom"));
552     m_functionSpaceTypeNames.insert
553     (FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes"));
554     m_functionSpaceTypeNames.insert
555 gross 1062 (FunctionSpaceNamesMapType::value_type(ReducedNodes,"Finley_Reduced_Nodes"));
556     m_functionSpaceTypeNames.insert
557 jgs 82 (FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements"));
558     m_functionSpaceTypeNames.insert
559 gross 1059 (FunctionSpaceNamesMapType::value_type(ReducedElements,"Finley_Reduced_Elements"));
560     m_functionSpaceTypeNames.insert
561 jgs 82 (FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements"));
562     m_functionSpaceTypeNames.insert
563 gross 1059 (FunctionSpaceNamesMapType::value_type(ReducedFaceElements,"Finley_Reduced_Face_Elements"));
564     m_functionSpaceTypeNames.insert
565 jgs 82 (FunctionSpaceNamesMapType::value_type(Points,"Finley_Points"));
566     m_functionSpaceTypeNames.insert
567     (FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0"));
568     m_functionSpaceTypeNames.insert
569 gross 1059 (FunctionSpaceNamesMapType::value_type(ReducedContactElementsZero,"Finley_Reduced_Contact_Elements_0"));
570     m_functionSpaceTypeNames.insert
571 jgs 82 (FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1"));
572 gross 1059 m_functionSpaceTypeNames.insert
573     (FunctionSpaceNamesMapType::value_type(ReducedContactElementsOne,"Finley_Reduced_Contact_Elements_1"));
574 jgs 82 }
575    
576     int MeshAdapter::getContinuousFunctionCode() const
577     {
578     return Nodes;
579     }
580 gross 1062 int MeshAdapter::getReducedContinuousFunctionCode() const
581     {
582     return ReducedNodes;
583     }
584 jgs 149
585 jgs 82 int MeshAdapter::getFunctionCode() const
586     {
587     return Elements;
588     }
589 gross 1059 int MeshAdapter::getReducedFunctionCode() const
590     {
591     return ReducedElements;
592     }
593 jgs 149
594 jgs 82 int MeshAdapter::getFunctionOnBoundaryCode() const
595     {
596     return FaceElements;
597     }
598 gross 1059 int MeshAdapter::getReducedFunctionOnBoundaryCode() const
599     {
600     return ReducedFaceElements;
601     }
602 jgs 149
603 jgs 82 int MeshAdapter::getFunctionOnContactZeroCode() const
604     {
605     return ContactElementsZero;
606     }
607 gross 1059 int MeshAdapter::getReducedFunctionOnContactZeroCode() const
608     {
609     return ReducedContactElementsZero;
610     }
611 jgs 149
612 jgs 82 int MeshAdapter::getFunctionOnContactOneCode() const
613     {
614     return ContactElementsOne;
615     }
616 gross 1059 int MeshAdapter::getReducedFunctionOnContactOneCode() const
617     {
618     return ReducedContactElementsOne;
619     }
620 jgs 82
621     int MeshAdapter::getSolutionCode() const
622     {
623     return DegreesOfFreedom;
624     }
625 jgs 149
626 jgs 82 int MeshAdapter::getReducedSolutionCode() const
627     {
628     return ReducedDegreesOfFreedom;
629     }
630 jgs 149
631 jgs 82 int MeshAdapter::getDiracDeltaFunctionCode() const
632     {
633     return Points;
634     }
635 jgs 149
636 jgs 82 //
637     // return the spatial dimension of the Mesh:
638     //
639     int MeshAdapter::getDim() const
640     {
641     int numDim=Finley_Mesh_getDim(m_finleyMesh.get());
642     checkFinleyError();
643     return numDim;
644     }
645 jgs 149
646 jgs 82 //
647     // return the number of data points per sample and the number of samples
648     // needed to represent data on a parts of the mesh.
649     //
650     pair<int,int> MeshAdapter::getDataShape(int functionSpaceCode) const
651     {
652     int numDataPointsPerSample=0;
653     int numSamples=0;
654     Finley_Mesh* mesh=m_finleyMesh.get();
655     switch (functionSpaceCode) {
656     case(Nodes):
657     numDataPointsPerSample=1;
658 ksteube 1312 numSamples=Finley_NodeFile_getNumNodes(mesh->Nodes);
659 jgs 82 break;
660 gross 1062 case(ReducedNodes):
661     numDataPointsPerSample=1;
662 ksteube 1312 numSamples=Finley_NodeFile_getNumReducedNodes(mesh->Nodes);
663 gross 1062 break;
664 jgs 82 case(Elements):
665     if (mesh->Elements!=NULL) {
666     numSamples=mesh->Elements->numElements;
667     numDataPointsPerSample=mesh->Elements->ReferenceElement->numQuadNodes;
668     }
669     break;
670 gross 1062 case(ReducedElements):
671     if (mesh->Elements!=NULL) {
672     numSamples=mesh->Elements->numElements;
673     numDataPointsPerSample=mesh->Elements->ReferenceElementReducedOrder->numQuadNodes;
674     }
675     break;
676 jgs 82 case(FaceElements):
677     if (mesh->FaceElements!=NULL) {
678     numDataPointsPerSample=mesh->FaceElements->ReferenceElement->numQuadNodes;
679     numSamples=mesh->FaceElements->numElements;
680     }
681     break;
682 gross 1062 case(ReducedFaceElements):
683     if (mesh->FaceElements!=NULL) {
684     numDataPointsPerSample=mesh->FaceElements->ReferenceElementReducedOrder->numQuadNodes;
685     numSamples=mesh->FaceElements->numElements;
686     }
687     break;
688 jgs 82 case(Points):
689     if (mesh->Points!=NULL) {
690     numDataPointsPerSample=1;
691     numSamples=mesh->Points->numElements;
692     }
693     break;
694     case(ContactElementsZero):
695     if (mesh->ContactElements!=NULL) {
696     numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;
697     numSamples=mesh->ContactElements->numElements;
698     }
699     break;
700 gross 1062 case(ReducedContactElementsZero):
701     if (mesh->ContactElements!=NULL) {
702     numDataPointsPerSample=mesh->ContactElements->ReferenceElementReducedOrder->numQuadNodes;
703     numSamples=mesh->ContactElements->numElements;
704     }
705     break;
706 jgs 82 case(ContactElementsOne):
707     if (mesh->ContactElements!=NULL) {
708     numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;
709     numSamples=mesh->ContactElements->numElements;
710     }
711     break;
712 gross 1062 case(ReducedContactElementsOne):
713     if (mesh->ContactElements!=NULL) {
714     numDataPointsPerSample=mesh->ContactElements->ReferenceElementReducedOrder->numQuadNodes;
715     numSamples=mesh->ContactElements->numElements;
716     }
717     break;
718 jgs 82 case(DegreesOfFreedom):
719     if (mesh->Nodes!=NULL) {
720     numDataPointsPerSample=1;
721 ksteube 1312 numSamples=Finley_NodeFile_getNumDegreesOfFreedom(mesh->Nodes);
722 jgs 82 }
723     break;
724     case(ReducedDegreesOfFreedom):
725     if (mesh->Nodes!=NULL) {
726     numDataPointsPerSample=1;
727 ksteube 1312 numSamples=Finley_NodeFile_getNumReducedDegreesOfFreedom(mesh->Nodes);
728 jgs 82 }
729     break;
730     default:
731     stringstream temp;
732 jgs 150 temp << "Error - Invalid function space type: " << functionSpaceCode << " for domain: " << getDescription();
733 jgs 82 throw FinleyAdapterException(temp.str());
734     break;
735     }
736     return pair<int,int>(numDataPointsPerSample,numSamples);
737     }
738 jgs 149
739 jgs 82 //
740     // adds linear PDE of second order into a given stiffness matrix and right hand side:
741     //
742     void MeshAdapter::addPDEToSystem(
743 jgs 480 SystemMatrixAdapter& mat, escript::Data& rhs,
744     const escript::Data& A, const escript::Data& B, const escript::Data& C,const escript::Data& D,const escript::Data& X,const escript::Data& Y,
745     const escript::Data& d, const escript::Data& y,
746     const escript::Data& d_contact,const escript::Data& y_contact) const
747 jgs 82 {
748 gross 798 escriptDataC _rhs=rhs.getDataC();
749     escriptDataC _A =A.getDataC();
750     escriptDataC _B=B.getDataC();
751     escriptDataC _C=C.getDataC();
752     escriptDataC _D=D.getDataC();
753     escriptDataC _X=X.getDataC();
754     escriptDataC _Y=Y.getDataC();
755     escriptDataC _d=d.getDataC();
756     escriptDataC _y=y.getDataC();
757     escriptDataC _d_contact=d_contact.getDataC();
758     escriptDataC _y_contact=y_contact.getDataC();
759 bcumming 751
760 jgs 82 Finley_Mesh* mesh=m_finleyMesh.get();
761 gross 798
762 bcumming 751 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,mat.getPaso_SystemMatrix(), &_rhs, &_A, &_B, &_C, &_D, &_X, &_Y );
763 jgs 82 checkFinleyError();
764 bcumming 751
765 gross 798 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, mat.getPaso_SystemMatrix(), &_rhs, 0, 0, 0, &_d, 0, &_y );
766 jgs 82 checkFinleyError();
767 bcumming 751
768 gross 798 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, mat.getPaso_SystemMatrix(), &_rhs , 0, 0, 0, &_d_contact, 0, &_y_contact );
769 jgs 82 checkFinleyError();
770     }
771 jgs 149
772 gross 1204 void MeshAdapter::addPDEToLumpedSystem(
773     escript::Data& mat,
774 ksteube 1312 const escript::Data& D,
775 gross 1204 const escript::Data& d) const
776     {
777     escriptDataC _mat=mat.getDataC();
778     escriptDataC _D=D.getDataC();
779     escriptDataC _d=d.getDataC();
780    
781     Finley_Mesh* mesh=m_finleyMesh.get();
782 ksteube 1312
783 gross 1204 Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->Elements,&_mat, &_D);
784     Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->FaceElements,&_mat, &_d);
785    
786     checkFinleyError();
787     }
788    
789    
790 jgs 82 //
791 jgs 102 // adds linear PDE of second order into the right hand side only
792     //
793 bcumming 751 void MeshAdapter::addPDEToRHS( escript::Data& rhs, const escript::Data& X,const escript::Data& Y, const escript::Data& y, const escript::Data& y_contact) const
794 jgs 102 {
795     Finley_Mesh* mesh=m_finleyMesh.get();
796 jgs 147
797 gross 798 escriptDataC _rhs=rhs.getDataC();
798     escriptDataC _X=X.getDataC();
799     escriptDataC _Y=Y.getDataC();
800     escriptDataC _y=y.getDataC();
801     escriptDataC _y_contact=y_contact.getDataC();
802    
803     Finley_Assemble_PDE(mesh->Nodes,mesh->Elements, 0, &_rhs, 0, 0, 0, 0, &_X, &_Y );
804 jgs 102 checkFinleyError();
805 jgs 147
806 gross 798 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, 0, &_rhs, 0, 0, 0, 0, 0, &_y );
807     checkFinleyError();
808 jgs 147
809 gross 798 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, 0, &_rhs , 0, 0, 0, 0, 0, &_y_contact );
810 jgs 102 checkFinleyError();
811     }
812 jgs 149
813 jgs 102 //
814 jgs 82 // interpolates data between different function spaces:
815     //
816 jgs 480 void MeshAdapter::interpolateOnDomain(escript::Data& target,const escript::Data& in) const
817 jgs 82 {
818     const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(in.getFunctionSpace().getDomain());
819     const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());
820 bcumming 751 if (inDomain!=*this)
821     throw FinleyAdapterException("Error - Illegal domain of interpolant.");
822 jgs 82 if (targetDomain!=*this)
823 bcumming 751 throw FinleyAdapterException("Error - Illegal domain of interpolation target.");
824 jgs 82
825     Finley_Mesh* mesh=m_finleyMesh.get();
826 gross 1062 escriptDataC _target=target.getDataC();
827     escriptDataC _in=in.getDataC();
828 jgs 82 switch(in.getFunctionSpace().getTypeCode()) {
829     case(Nodes):
830     switch(target.getFunctionSpace().getTypeCode()) {
831     case(Nodes):
832 gross 1062 case(ReducedNodes):
833     case(DegreesOfFreedom):
834 jgs 82 case(ReducedDegreesOfFreedom):
835 gross 1062 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
836     break;
837     case(Elements):
838     case(ReducedElements):
839     Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
840     break;
841     case(FaceElements):
842     case(ReducedFaceElements):
843     Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
844     break;
845     case(Points):
846     Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
847     break;
848     case(ContactElementsZero):
849     case(ReducedContactElementsZero):
850     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
851     break;
852     case(ContactElementsOne):
853     case(ReducedContactElementsOne):
854     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
855     break;
856     default:
857     stringstream temp;
858     temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
859     throw FinleyAdapterException(temp.str());
860     break;
861     }
862     break;
863     case(ReducedNodes):
864     switch(target.getFunctionSpace().getTypeCode()) {
865     case(Nodes):
866     case(ReducedNodes):
867 jgs 82 case(DegreesOfFreedom):
868 gross 1062 case(ReducedDegreesOfFreedom):
869     Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
870 jgs 82 break;
871     case(Elements):
872 gross 1062 case(ReducedElements):
873     Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
874 jgs 82 break;
875     case(FaceElements):
876 gross 1062 case(ReducedFaceElements):
877     Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
878 jgs 82 break;
879     case(Points):
880 gross 1062 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
881 jgs 82 break;
882     case(ContactElementsZero):
883 gross 1062 case(ReducedContactElementsZero):
884     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
885 jgs 82 break;
886     case(ContactElementsOne):
887 gross 1062 case(ReducedContactElementsOne):
888     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
889 jgs 82 break;
890     default:
891 jgs 150 stringstream temp;
892     temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
893     throw FinleyAdapterException(temp.str());
894 jgs 82 break;
895     }
896     break;
897     case(Elements):
898     if (target.getFunctionSpace().getTypeCode()==Elements) {
899 gross 1062 Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
900 gross 1116 } else if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
901     Finley_Assemble_AverageElementData(mesh->Elements,&_target,&_in);
902 jgs 82 } else {
903 jgs 150 throw FinleyAdapterException("Error - No interpolation with data on elements possible.");
904 jgs 82 }
905     break;
906 gross 1062 case(ReducedElements):
907     if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
908     Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
909     } else {
910     throw FinleyAdapterException("Error - No interpolation with data on elements with reduced integration order possible.");
911     }
912     break;
913 jgs 82 case(FaceElements):
914     if (target.getFunctionSpace().getTypeCode()==FaceElements) {
915 gross 1062 Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
916 gross 1116 } else if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
917     Finley_Assemble_AverageElementData(mesh->FaceElements,&_target,&_in);
918 jgs 82 } else {
919 jgs 150 throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");
920 jgs 82 }
921 gross 1062 break;
922     case(ReducedFaceElements):
923     if (target.getFunctionSpace().getTypeCode()==FaceElements) {
924     Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
925     } else {
926     throw FinleyAdapterException("Error - No interpolation with data on face elements with reduced integration order possible.");
927     }
928     break;
929 jgs 82 case(Points):
930     if (target.getFunctionSpace().getTypeCode()==Points) {
931 gross 1062 Finley_Assemble_CopyElementData(mesh->Points,&_target,&_in);
932 jgs 82 } else {
933 jgs 150 throw FinleyAdapterException("Error - No interpolation with data on points possible.");
934 jgs 82 }
935     break;
936     case(ContactElementsZero):
937     case(ContactElementsOne):
938     if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {
939 gross 1062 Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
940 gross 1116 } else if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
941     Finley_Assemble_AverageElementData(mesh->ContactElements,&_target,&_in);
942 jgs 82 } else {
943 jgs 150 throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");
944 jgs 82 break;
945     }
946     break;
947 gross 1062 case(ReducedContactElementsZero):
948     case(ReducedContactElementsOne):
949     if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
950     Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
951     } else {
952     throw FinleyAdapterException("Error - No interpolation with data on contact elements with reduced integration order possible.");
953     break;
954     }
955     break;
956 bcumming 751 case(DegreesOfFreedom):
957 jgs 82 switch(target.getFunctionSpace().getTypeCode()) {
958     case(ReducedDegreesOfFreedom):
959     case(DegreesOfFreedom):
960 ksteube 1312 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
961     break;
962    
963 jgs 82 case(Nodes):
964 gross 1062 case(ReducedNodes):
965 ksteube 1312 if (getMPISize()>1) {
966     escript::Data temp=escript::Data(in);
967     temp.expand();
968     escriptDataC _in2 = temp.getDataC();
969     Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
970     } else {
971     Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
972     }
973 jgs 82 break;
974     case(Elements):
975 gross 1062 case(ReducedElements):
976 ksteube 1312 if (getMPISize()>1) {
977     escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
978     escriptDataC _in2 = temp.getDataC();
979     Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
980     } else {
981     Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
982     }
983 jgs 82 break;
984     case(FaceElements):
985 gross 1062 case(ReducedFaceElements):
986 ksteube 1312 if (getMPISize()>1) {
987     escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
988     escriptDataC _in2 = temp.getDataC();
989     Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
990    
991     } else {
992     Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
993     }
994 jgs 82 break;
995     case(Points):
996 ksteube 1312 if (getMPISize()>1) {
997     escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
998     escriptDataC _in2 = temp.getDataC();
999     } else {
1000     Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1001     }
1002 jgs 82 break;
1003     case(ContactElementsZero):
1004     case(ContactElementsOne):
1005 gross 1062 case(ReducedContactElementsZero):
1006     case(ReducedContactElementsOne):
1007 ksteube 1312 if (getMPISize()>1) {
1008     escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1009     escriptDataC _in2 = temp.getDataC();
1010     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1011     } else {
1012     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1013     }
1014 jgs 82 break;
1015     default:
1016 jgs 150 stringstream temp;
1017     temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1018     throw FinleyAdapterException(temp.str());
1019 jgs 82 break;
1020     }
1021     break;
1022     case(ReducedDegreesOfFreedom):
1023     switch(target.getFunctionSpace().getTypeCode()) {
1024 gross 1062 case(Nodes):
1025     throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");
1026     break;
1027     case(ReducedNodes):
1028 ksteube 1312 if (getMPISize()>1) {
1029     escript::Data temp=escript::Data(in);
1030     temp.expand();
1031     escriptDataC _in2 = temp.getDataC();
1032     Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1033     } else {
1034     Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1035     }
1036     break;
1037 gross 1062 case(DegreesOfFreedom):
1038     throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");
1039     break;
1040 jgs 82 case(ReducedDegreesOfFreedom):
1041 gross 1062 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1042 jgs 82 break;
1043     case(Elements):
1044 gross 1062 case(ReducedElements):
1045 ksteube 1312 if (getMPISize()>1) {
1046     escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1047     escriptDataC _in2 = temp.getDataC();
1048     Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1049     } else {
1050     Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1051     }
1052 jgs 82 break;
1053     case(FaceElements):
1054 gross 1062 case(ReducedFaceElements):
1055 ksteube 1312 if (getMPISize()>1) {
1056     escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1057     escriptDataC _in2 = temp.getDataC();
1058     Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1059     } else {
1060     Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1061     }
1062 jgs 82 break;
1063     case(Points):
1064 ksteube 1312 if (getMPISize()>1) {
1065     escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1066     escriptDataC _in2 = temp.getDataC();
1067     Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in2,&_target);
1068     } else {
1069     Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1070     }
1071 jgs 82 break;
1072     case(ContactElementsZero):
1073     case(ContactElementsOne):
1074 gross 1062 case(ReducedContactElementsZero):
1075     case(ReducedContactElementsOne):
1076 ksteube 1312 if (getMPISize()>1) {
1077     escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1078     escriptDataC _in2 = temp.getDataC();
1079     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1080     } else {
1081     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1082     }
1083 jgs 82 break;
1084     default:
1085 jgs 150 stringstream temp;
1086     temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1087     throw FinleyAdapterException(temp.str());
1088 jgs 82 break;
1089     }
1090     break;
1091     default:
1092 jgs 150 stringstream temp;
1093     temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();
1094     throw FinleyAdapterException(temp.str());
1095 jgs 82 break;
1096     }
1097     checkFinleyError();
1098     }
1099    
1100     //
1101     // copies the locations of sample points into x:
1102     //
1103 jgs 480 void MeshAdapter::setToX(escript::Data& arg) const
1104 jgs 82 {
1105     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1106     if (argDomain!=*this)
1107     throw FinleyAdapterException("Error - Illegal domain of data point locations");
1108     Finley_Mesh* mesh=m_finleyMesh.get();
1109     // in case of values node coordinates we can do the job directly:
1110     if (arg.getFunctionSpace().getTypeCode()==Nodes) {
1111 gross 1062 escriptDataC _arg=arg.getDataC();
1112     Finley_Assemble_NodeCoordinates(mesh->Nodes,&_arg);
1113 jgs 82 } else {
1114 jgs 480 escript::Data tmp_data=Vector(0.0,continuousFunction(asAbstractContinuousDomain()),true);
1115 gross 1062 escriptDataC _tmp_data=tmp_data.getDataC();
1116     Finley_Assemble_NodeCoordinates(mesh->Nodes,&_tmp_data);
1117 jgs 82 // this is then interpolated onto arg:
1118     interpolateOnDomain(arg,tmp_data);
1119     }
1120     checkFinleyError();
1121     }
1122 jgs 149
1123 jgs 82 //
1124     // return the normal vectors at the location of data points as a Data object:
1125     //
1126 jgs 480 void MeshAdapter::setToNormal(escript::Data& normal) const
1127 jgs 82 {
1128     const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain());
1129     if (normalDomain!=*this)
1130     throw FinleyAdapterException("Error - Illegal domain of normal locations");
1131     Finley_Mesh* mesh=m_finleyMesh.get();
1132 gross 1062 escriptDataC _normal=normal.getDataC();
1133 jgs 82 switch(normal.getFunctionSpace().getTypeCode()) {
1134     case(Nodes):
1135 jgs 150 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for nodes");
1136 jgs 82 break;
1137 gross 1062 case(ReducedNodes):
1138     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced nodes");
1139     break;
1140 jgs 82 case(Elements):
1141 jgs 150 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements");
1142 jgs 82 break;
1143 gross 1062 case(ReducedElements):
1144     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements with reduced integration order");
1145     break;
1146 jgs 82 case (FaceElements):
1147 gross 1062 Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1148 jgs 82 break;
1149 gross 1062 case (ReducedFaceElements):
1150     Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1151     break;
1152 jgs 82 case(Points):
1153 jgs 150 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for point elements");
1154 jgs 82 break;
1155     case (ContactElementsOne):
1156     case (ContactElementsZero):
1157 gross 1062 Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1158 jgs 82 break;
1159 gross 1062 case (ReducedContactElementsOne):
1160     case (ReducedContactElementsZero):
1161     Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1162     break;
1163 jgs 82 case(DegreesOfFreedom):
1164 jgs 150 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for degrees of freedom.");
1165 jgs 82 break;
1166     case(ReducedDegreesOfFreedom):
1167 jgs 150 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced degrees of freedom.");
1168 jgs 82 break;
1169     default:
1170 jgs 150 stringstream temp;
1171     temp << "Error - Normal Vectors: Finley does not know anything about function space type " << normal.getFunctionSpace().getTypeCode();
1172     throw FinleyAdapterException(temp.str());
1173 jgs 82 break;
1174     }
1175     checkFinleyError();
1176     }
1177 jgs 149
1178 jgs 82 //
1179     // interpolates data to other domain:
1180     //
1181 jgs 480 void MeshAdapter::interpolateACross(escript::Data& target,const escript::Data& source) const
1182 jgs 82 {
1183     const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());
1184     if (targetDomain!=*this)
1185     throw FinleyAdapterException("Error - Illegal domain of interpolation target");
1186    
1187 jgs 150 throw FinleyAdapterException("Error - Finley does not allow interpolation across domains yet.");
1188 jgs 82 }
1189 jgs 149
1190 jgs 82 //
1191     // calculates the integral of a function defined of arg:
1192     //
1193 jgs 480 void MeshAdapter::setToIntegrals(std::vector<double>& integrals,const escript::Data& arg) const
1194 jgs 82 {
1195     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1196     if (argDomain!=*this)
1197     throw FinleyAdapterException("Error - Illegal domain of integration kernel");
1198    
1199 ksteube 1312 double blocktimer_start = blocktimer_time();
1200 jgs 82 Finley_Mesh* mesh=m_finleyMesh.get();
1201 ksteube 1312 escriptDataC _temp;
1202     escript::Data temp;
1203 gross 1062 escriptDataC _arg=arg.getDataC();
1204 jgs 82 switch(arg.getFunctionSpace().getTypeCode()) {
1205     case(Nodes):
1206 ksteube 1312 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1207     _temp=temp.getDataC();
1208     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1209 jgs 82 break;
1210 gross 1062 case(ReducedNodes):
1211 ksteube 1312 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1212     _temp=temp.getDataC();
1213     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1214 gross 1062 break;
1215 jgs 82 case(Elements):
1216 gross 1062 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1217 jgs 82 break;
1218 gross 1062 case(ReducedElements):
1219     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1220 gross 1064 break;
1221 jgs 82 case(FaceElements):
1222 gross 1062 Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1223 jgs 82 break;
1224 gross 1062 case(ReducedFaceElements):
1225     Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1226     break;
1227 jgs 82 case(Points):
1228 jgs 150 throw FinleyAdapterException("Error - Integral of data on points is not supported.");
1229 jgs 82 break;
1230     case(ContactElementsZero):
1231 gross 1062 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1232 jgs 82 break;
1233 gross 1062 case(ReducedContactElementsZero):
1234     Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1235     break;
1236 jgs 82 case(ContactElementsOne):
1237 gross 1062 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1238 jgs 82 break;
1239 gross 1062 case(ReducedContactElementsOne):
1240     Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1241     break;
1242 jgs 82 case(DegreesOfFreedom):
1243 ksteube 1312 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1244     _temp=temp.getDataC();
1245     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1246 jgs 82 break;
1247     case(ReducedDegreesOfFreedom):
1248 ksteube 1312 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1249     _temp=temp.getDataC();
1250     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1251 jgs 82 break;
1252     default:
1253 jgs 150 stringstream temp;
1254     temp << "Error - Integrals: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1255     throw FinleyAdapterException(temp.str());
1256 jgs 82 break;
1257     }
1258     checkFinleyError();
1259 ksteube 1312 blocktimer_increment("integrate()", blocktimer_start);
1260 jgs 82 }
1261 jgs 149
1262 jgs 82 //
1263     // calculates the gradient of arg:
1264     //
1265 jgs 480 void MeshAdapter::setToGradient(escript::Data& grad,const escript::Data& arg) const
1266 jgs 82 {
1267     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1268     if (argDomain!=*this)
1269     throw FinleyAdapterException("Error - Illegal domain of gradient argument");
1270     const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(grad.getFunctionSpace().getDomain());
1271     if (gradDomain!=*this)
1272     throw FinleyAdapterException("Error - Illegal domain of gradient");
1273    
1274     Finley_Mesh* mesh=m_finleyMesh.get();
1275 gross 1062 escriptDataC _grad=grad.getDataC();
1276 bcumming 751 escriptDataC nodeDataC;
1277 ksteube 1312 escript::Data temp;
1278     if (getMPISize()>1) {
1279     if( arg.getFunctionSpace().getTypeCode() == DegreesOfFreedom ) {
1280     temp=escript::Data( arg, continuousFunction(asAbstractContinuousDomain()) );
1281     nodeDataC = temp.getDataC();
1282     } else if( arg.getFunctionSpace().getTypeCode() == ReducedDegreesOfFreedom ) {
1283     temp=escript::Data( arg, reducedContinuousFunction(asAbstractContinuousDomain()) );
1284     nodeDataC = temp.getDataC();
1285     } else {
1286     nodeDataC = arg.getDataC();
1287     }
1288     } else {
1289     nodeDataC = arg.getDataC();
1290 bcumming 751 }
1291 jgs 82 switch(grad.getFunctionSpace().getTypeCode()) {
1292     case(Nodes):
1293 jgs 150 throw FinleyAdapterException("Error - Gradient at nodes is not supported.");
1294 jgs 82 break;
1295 gross 1062 case(ReducedNodes):
1296     throw FinleyAdapterException("Error - Gradient at reduced nodes is not supported.");
1297     break;
1298 jgs 82 case(Elements):
1299 gross 1062 Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1300 jgs 82 break;
1301 gross 1062 case(ReducedElements):
1302     Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1303     break;
1304 jgs 82 case(FaceElements):
1305 gross 1062 Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1306 jgs 82 break;
1307 gross 1062 case(ReducedFaceElements):
1308     Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1309     break;
1310 jgs 82 case(Points):
1311 jgs 150 throw FinleyAdapterException("Error - Gradient at points is not supported.");
1312 jgs 82 break;
1313     case(ContactElementsZero):
1314 gross 1062 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1315 jgs 82 break;
1316 gross 1062 case(ReducedContactElementsZero):
1317     Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1318     break;
1319 jgs 82 case(ContactElementsOne):
1320 gross 1062 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1321 jgs 82 break;
1322 gross 1062 case(ReducedContactElementsOne):
1323     Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1324     break;
1325 jgs 82 case(DegreesOfFreedom):
1326 jgs 150 throw FinleyAdapterException("Error - Gradient at degrees of freedom is not supported.");
1327 jgs 82 break;
1328     case(ReducedDegreesOfFreedom):
1329 jgs 150 throw FinleyAdapterException("Error - Gradient at reduced degrees of freedom is not supported.");
1330 jgs 82 break;
1331     default:
1332 jgs 150 stringstream temp;
1333     temp << "Error - Gradient: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1334     throw FinleyAdapterException(temp.str());
1335 jgs 82 break;
1336     }
1337     checkFinleyError();
1338     }
1339 jgs 149
1340 jgs 82 //
1341     // returns the size of elements:
1342     //
1343 jgs 480 void MeshAdapter::setToSize(escript::Data& size) const
1344 jgs 82 {
1345     Finley_Mesh* mesh=m_finleyMesh.get();
1346     escriptDataC tmp=size.getDataC();
1347     switch(size.getFunctionSpace().getTypeCode()) {
1348     case(Nodes):
1349 jgs 150 throw FinleyAdapterException("Error - Size of nodes is not supported.");
1350 jgs 82 break;
1351 gross 1062 case(ReducedNodes):
1352     throw FinleyAdapterException("Error - Size of reduced nodes is not supported.");
1353     break;
1354 jgs 82 case(Elements):
1355     Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1356     break;
1357 gross 1062 case(ReducedElements):
1358     Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1359     break;
1360 jgs 82 case(FaceElements):
1361     Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1362     break;
1363 gross 1062 case(ReducedFaceElements):
1364     Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1365     break;
1366 jgs 82 case(Points):
1367 jgs 150 throw FinleyAdapterException("Error - Size of point elements is not supported.");
1368 jgs 82 break;
1369     case(ContactElementsZero):
1370     case(ContactElementsOne):
1371     Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1372     break;
1373 gross 1062 case(ReducedContactElementsZero):
1374     case(ReducedContactElementsOne):
1375     Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1376     break;
1377 jgs 82 case(DegreesOfFreedom):
1378 jgs 150 throw FinleyAdapterException("Error - Size of degrees of freedom is not supported.");
1379 jgs 82 break;
1380     case(ReducedDegreesOfFreedom):
1381 jgs 150 throw FinleyAdapterException("Error - Size of reduced degrees of freedom is not supported.");
1382 jgs 82 break;
1383     default:
1384 jgs 150 stringstream temp;
1385     temp << "Error - Element size: Finley does not know anything about function space type " << size.getFunctionSpace().getTypeCode();
1386     throw FinleyAdapterException(temp.str());
1387 jgs 82 break;
1388     }
1389     checkFinleyError();
1390     }
1391 jgs 149
1392 jgs 82 // sets the location of nodes:
1393 jgs 480 void MeshAdapter::setNewX(const escript::Data& new_x)
1394 jgs 82 {
1395     Finley_Mesh* mesh=m_finleyMesh.get();
1396 bcumming 751 escriptDataC tmp;
1397 jgs 82 const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(new_x.getFunctionSpace().getDomain());
1398     if (newDomain!=*this)
1399     throw FinleyAdapterException("Error - Illegal domain of new point locations");
1400 bcumming 751 tmp = new_x.getDataC();
1401     Finley_Mesh_setCoordinates(mesh,&tmp);
1402 jgs 82 checkFinleyError();
1403     }
1404 jgs 149
1405 jgs 82 // saves a data array in openDX format:
1406 jgs 153 void MeshAdapter::saveDX(const std::string& filename,const boost::python::dict& arg) const
1407     {
1408     int MAX_namelength=256;
1409     const int num_data=boost::python::extract<int>(arg.attr("__len__")());
1410 woo409 757 /* win32 refactor */
1411     char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1412     for(int i=0;i<num_data;i++)
1413     {
1414     names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;
1415     }
1416 jgs 153
1417 woo409 757 char* *c_names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1418     escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;
1419     escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;
1420    
1421 ksteube 1312 boost::python::list keys=arg.keys();
1422     for (int i=0;i<num_data;++i) {
1423     std::string n=boost::python::extract<std::string>(keys[i]);
1424 jgs 480 escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1425 jgs 153 if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)
1426 ksteube 1312 throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain");
1427 jgs 153 data[i]=d.getDataC();
1428     ptr_data[i]=&(data[i]);
1429     c_names[i]=&(names[i][0]);
1430     if (n.length()>MAX_namelength-1) {
1431     strncpy(c_names[i],n.c_str(),MAX_namelength-1);
1432     c_names[i][MAX_namelength-1]='\0';
1433     } else {
1434     strcpy(c_names[i],n.c_str());
1435     }
1436     }
1437     Finley_Mesh_saveDX(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);
1438     checkFinleyError();
1439 woo409 757
1440     /* win32 refactor */
1441     TMPMEMFREE(c_names);
1442     TMPMEMFREE(data);
1443     TMPMEMFREE(ptr_data);
1444     for(int i=0;i<num_data;i++)
1445     {
1446     TMPMEMFREE(names[i]);
1447     }
1448     TMPMEMFREE(names);
1449    
1450 jgs 153 return;
1451 jgs 82 }
1452 jgs 149
1453 jgs 110 // saves a data array in openVTK format:
1454 jgs 153 void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg) const
1455     {
1456     int MAX_namelength=256;
1457     const int num_data=boost::python::extract<int>(arg.attr("__len__")());
1458 woo409 757 /* win32 refactor */
1459     char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1460     for(int i=0;i<num_data;i++)
1461     {
1462     names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;
1463     }
1464 jgs 153
1465 woo409 757 char* *c_names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1466     escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;
1467     escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;
1468    
1469 jgs 153 boost::python::list keys=arg.keys();
1470     for (int i=0;i<num_data;++i) {
1471 ksteube 1312 std::string n=boost::python::extract<std::string>(keys[i]);
1472 jgs 480 escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1473 jgs 153 if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)
1474     throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain");
1475     data[i]=d.getDataC();
1476     ptr_data[i]=&(data[i]);
1477     c_names[i]=&(names[i][0]);
1478     if (n.length()>MAX_namelength-1) {
1479     strncpy(c_names[i],n.c_str(),MAX_namelength-1);
1480     c_names[i][MAX_namelength-1]='\0';
1481     } else {
1482     strcpy(c_names[i],n.c_str());
1483     }
1484     }
1485     Finley_Mesh_saveVTK(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);
1486 dhawcroft 793
1487 ksteube 1312 checkFinleyError();
1488 woo409 757 /* win32 refactor */
1489     TMPMEMFREE(c_names);
1490     TMPMEMFREE(data);
1491     TMPMEMFREE(ptr_data);
1492     for(int i=0;i<num_data;i++)
1493     {
1494     TMPMEMFREE(names[i]);
1495     }
1496     TMPMEMFREE(names);
1497    
1498 jgs 153 return;
1499 jgs 110 }
1500 jgs 153
1501    
1502 jgs 82 // creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros:
1503     SystemMatrixAdapter MeshAdapter::newSystemMatrix(
1504     const int row_blocksize,
1505     const escript::FunctionSpace& row_functionspace,
1506     const int column_blocksize,
1507     const escript::FunctionSpace& column_functionspace,
1508 jgs 102 const int type) const
1509 jgs 82 {
1510     int reduceRowOrder=0;
1511     int reduceColOrder=0;
1512     // is the domain right?
1513     const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(row_functionspace.getDomain());
1514     if (row_domain!=*this)
1515     throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator.");
1516     const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(column_functionspace.getDomain());
1517     if (col_domain!=*this)
1518     throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator.");
1519     // is the function space type right
1520     if (row_functionspace.getTypeCode()==DegreesOfFreedom) {
1521     reduceRowOrder=0;
1522     } else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1523     reduceRowOrder=1;
1524     } else {
1525     throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1526     }
1527     if (column_functionspace.getTypeCode()==DegreesOfFreedom) {
1528     reduceColOrder=0;
1529     } else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1530     reduceColOrder=1;
1531     } else {
1532     throw FinleyAdapterException("Error - illegal function space type for system matrix columns.");
1533     }
1534     // generate matrix:
1535 jgs 102
1536 jgs 150 Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder);
1537 jgs 82 checkFinleyError();
1538 ksteube 1312 Paso_SystemMatrix* fsystemMatrix;
1539     int trilinos = 0;
1540     if (trilinos) {
1541     #ifdef TRILINOS
1542     /* Allocation Epetra_VrbMatrix here */
1543     #endif
1544     }
1545     else {
1546     fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize);
1547     }
1548 jgs 150 checkPasoError();
1549 ksteube 1312 Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1550 jgs 82 return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace);
1551     }
1552 jgs 149
1553 jgs 82 //
1554     // vtkObject MeshAdapter::createVtkObject() const
1555     // TODO:
1556     //
1557 jgs 149
1558 jgs 82 //
1559     // returns true if data at the atom_type is considered as being cell centered:
1560     bool MeshAdapter::isCellOriented(int functionSpaceCode) const
1561     {
1562     switch(functionSpaceCode) {
1563     case(Nodes):
1564     case(DegreesOfFreedom):
1565     case(ReducedDegreesOfFreedom):
1566     return false;
1567     break;
1568     case(Elements):
1569     case(FaceElements):
1570     case(Points):
1571     case(ContactElementsZero):
1572     case(ContactElementsOne):
1573 gross 1062 case(ReducedElements):
1574     case(ReducedFaceElements):
1575     case(ReducedContactElementsZero):
1576     case(ReducedContactElementsOne):
1577 jgs 82 return true;
1578     break;
1579     default:
1580 jgs 150 stringstream temp;
1581     temp << "Error - Cell: Finley does not know anything about function space type " << functionSpaceCode;
1582     throw FinleyAdapterException(temp.str());
1583 jgs 82 break;
1584     }
1585     checkFinleyError();
1586     return false;
1587     }
1588 jgs 149
1589 jgs 82 bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const
1590     {
1591     switch(functionSpaceType_source) {
1592     case(Nodes):
1593     switch(functionSpaceType_target) {
1594     case(Nodes):
1595 gross 1062 case(ReducedNodes):
1596 jgs 82 case(ReducedDegreesOfFreedom):
1597     case(DegreesOfFreedom):
1598     case(Elements):
1599 gross 1062 case(ReducedElements):
1600 jgs 82 case(FaceElements):
1601 gross 1062 case(ReducedFaceElements):
1602 jgs 82 case(Points):
1603     case(ContactElementsZero):
1604 gross 1062 case(ReducedContactElementsZero):
1605 jgs 82 case(ContactElementsOne):
1606 gross 1062 case(ReducedContactElementsOne):
1607 jgs 82 return true;
1608     default:
1609 jgs 150 stringstream temp;
1610     temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1611     throw FinleyAdapterException(temp.str());
1612 jgs 82 }
1613     break;
1614 gross 1062 case(ReducedNodes):
1615     switch(functionSpaceType_target) {
1616     case(ReducedNodes):
1617     case(ReducedDegreesOfFreedom):
1618     case(Elements):
1619     case(ReducedElements):
1620     case(FaceElements):
1621     case(ReducedFaceElements):
1622     case(Points):
1623     case(ContactElementsZero):
1624     case(ReducedContactElementsZero):
1625     case(ContactElementsOne):
1626     case(ReducedContactElementsOne):
1627     return true;
1628     case(Nodes):
1629     case(DegreesOfFreedom):
1630     return false;
1631     default:
1632     stringstream temp;
1633     temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1634     throw FinleyAdapterException(temp.str());
1635     }
1636     break;
1637 jgs 82 case(Elements):
1638     if (functionSpaceType_target==Elements) {
1639     return true;
1640 gross 1116 } else if (functionSpaceType_target==ReducedElements) {
1641     return true;
1642 jgs 82 } else {
1643     return false;
1644     }
1645 gross 1062 case(ReducedElements):
1646     if (functionSpaceType_target==ReducedElements) {
1647     return true;
1648     } else {
1649     return false;
1650     }
1651 jgs 82 case(FaceElements):
1652     if (functionSpaceType_target==FaceElements) {
1653     return true;
1654 gross 1116 } else if (functionSpaceType_target==ReducedFaceElements) {
1655     return true;
1656 jgs 82 } else {
1657     return false;
1658     }
1659 gross 1062 case(ReducedFaceElements):
1660     if (functionSpaceType_target==ReducedFaceElements) {
1661     return true;
1662     } else {
1663     return false;
1664     }
1665 jgs 82 case(Points):
1666     if (functionSpaceType_target==Points) {
1667     return true;
1668     } else {
1669     return false;
1670     }
1671     case(ContactElementsZero):
1672     case(ContactElementsOne):
1673     if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {
1674     return true;
1675 gross 1116 } else if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1676     return true;
1677 jgs 82 } else {
1678     return false;
1679     }
1680 gross 1062 case(ReducedContactElementsZero):
1681     case(ReducedContactElementsOne):
1682     if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1683     return true;
1684     } else {
1685     return false;
1686     }
1687 jgs 82 case(DegreesOfFreedom):
1688     switch(functionSpaceType_target) {
1689     case(ReducedDegreesOfFreedom):
1690     case(DegreesOfFreedom):
1691     case(Nodes):
1692 gross 1062 case(ReducedNodes):
1693 jgs 82 case(Elements):
1694 gross 1062 case(ReducedElements):
1695     case(Points):
1696 jgs 82 case(FaceElements):
1697 gross 1062 case(ReducedFaceElements):
1698 jgs 82 case(ContactElementsZero):
1699 gross 1062 case(ReducedContactElementsZero):
1700 jgs 82 case(ContactElementsOne):
1701 gross 1062 case(ReducedContactElementsOne):
1702 jgs 82 return true;
1703     default:
1704 jgs 150 stringstream temp;
1705     temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1706     throw FinleyAdapterException(temp.str());
1707 jgs 82 }
1708     break;
1709     case(ReducedDegreesOfFreedom):
1710     switch(functionSpaceType_target) {
1711     case(ReducedDegreesOfFreedom):
1712 gross 1062 case(ReducedNodes):
1713 jgs 82 case(Elements):
1714 gross 1062 case(ReducedElements):
1715 jgs 82 case(FaceElements):
1716 gross 1062 case(ReducedFaceElements):
1717 jgs 82 case(Points):
1718     case(ContactElementsZero):
1719 gross 1062 case(ReducedContactElementsZero):
1720 jgs 82 case(ContactElementsOne):
1721 gross 1062 case(ReducedContactElementsOne):
1722 jgs 82 return true;
1723 jgs 147 case(Nodes):
1724 jgs 82 case(DegreesOfFreedom):
1725     return false;
1726     default:
1727 jgs 150 stringstream temp;
1728     temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1729     throw FinleyAdapterException(temp.str());
1730 jgs 82 }
1731     break;
1732     default:
1733 jgs 150 stringstream temp;
1734     temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;
1735     throw FinleyAdapterException(temp.str());
1736 jgs 82 break;
1737     }
1738     checkFinleyError();
1739     return false;
1740     }
1741 jgs 149
1742 jgs 82 bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const
1743     {
1744     return false;
1745     }
1746 jgs 104
1747 jgs 121 bool MeshAdapter::operator==(const AbstractDomain& other) const
1748 jgs 82 {
1749 jgs 121 const MeshAdapter* temp=dynamic_cast<const MeshAdapter*>(&other);
1750     if (temp!=0) {
1751     return (m_finleyMesh==temp->m_finleyMesh);
1752     } else {
1753     return false;
1754     }
1755 jgs 82 }
1756    
1757 jgs 121 bool MeshAdapter::operator!=(const AbstractDomain& other) const
1758 jgs 104 {
1759 jgs 121 return !(operator==(other));
1760 jgs 104 }
1761    
1762 jgs 150 int MeshAdapter::getSystemMatrixTypeId(const int solver, const int package, const bool symmetry) const
1763 jgs 102 {
1764 jgs 150 int out=Paso_SystemMatrix_getSystemMatrixTypeId(SystemMatrixAdapter::mapOptionToPaso(solver),SystemMatrixAdapter::mapOptionToPaso(package),symmetry?1:0);
1765     checkPasoError();
1766 jgs 102 return out;
1767     }
1768 jgs 149
1769 jgs 480 escript::Data MeshAdapter::getX() const
1770 jgs 102 {
1771     return continuousFunction(asAbstractContinuousDomain()).getX();
1772     }
1773 jgs 149
1774 jgs 480 escript::Data MeshAdapter::getNormal() const
1775 jgs 102 {
1776     return functionOnBoundary(asAbstractContinuousDomain()).getNormal();
1777     }
1778 jgs 149
1779 jgs 480 escript::Data MeshAdapter::getSize() const
1780 jgs 102 {
1781     return function(asAbstractContinuousDomain()).getSize();
1782     }
1783    
1784 gross 1062 int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const
1785     {
1786     int *out=0,i;
1787     Finley_Mesh* mesh=m_finleyMesh.get();
1788     switch (functionSpaceType) {
1789     case(Nodes):
1790 ksteube 1312 out=mesh->Nodes->Id;
1791     break;
1792 gross 1062 case(ReducedNodes):
1793 ksteube 1312 out=mesh->Nodes->reducedNodesId;
1794 gross 1062 break;
1795     case(Elements):
1796 gross 1080 out=mesh->Elements->Id;
1797 gross 1062 break;
1798     case(ReducedElements):
1799     out=mesh->Elements->Id;
1800     break;
1801     case(FaceElements):
1802     out=mesh->FaceElements->Id;
1803     break;
1804     case(ReducedFaceElements):
1805     out=mesh->FaceElements->Id;
1806     break;
1807     case(Points):
1808     out=mesh->Points->Id;
1809     break;
1810     case(ContactElementsZero):
1811     out=mesh->ContactElements->Id;
1812     break;
1813     case(ReducedContactElementsZero):
1814     out=mesh->ContactElements->Id;
1815     break;
1816     case(ContactElementsOne):
1817     out=mesh->ContactElements->Id;
1818     break;
1819     case(ReducedContactElementsOne):
1820     out=mesh->ContactElements->Id;
1821     break;
1822     case(DegreesOfFreedom):
1823 ksteube 1312 out=mesh->Nodes->degreesOfFreedomId;
1824 gross 1062 break;
1825     case(ReducedDegreesOfFreedom):
1826 ksteube 1312 out=mesh->Nodes->reducedDegreesOfFreedomId;
1827 gross 1062 break;
1828     default:
1829     stringstream temp;
1830     temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
1831     throw FinleyAdapterException(temp.str());
1832     break;
1833     }
1834     return out;
1835     }
1836 jgs 110 int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const
1837     {
1838 gross 547 int out=0;
1839     Finley_Mesh* mesh=m_finleyMesh.get();
1840     switch (functionSpaceType) {
1841     case(Nodes):
1842     out=mesh->Nodes->Tag[sampleNo];
1843     break;
1844 gross 1062 case(ReducedNodes):
1845     throw FinleyAdapterException(" Error - ReducedNodes does not support tags.");
1846     break;
1847 gross 547 case(Elements):
1848     out=mesh->Elements->Tag[sampleNo];
1849     break;
1850 gross 1062 case(ReducedElements):
1851     out=mesh->Elements->Tag[sampleNo];
1852     break;
1853 gross 547 case(FaceElements):
1854     out=mesh->FaceElements->Tag[sampleNo];
1855     break;
1856 gross 1062 case(ReducedFaceElements):
1857     out=mesh->FaceElements->Tag[sampleNo];
1858     break;
1859 gross 547 case(Points):
1860     out=mesh->Points->Tag[sampleNo];
1861     break;
1862     case(ContactElementsZero):
1863     out=mesh->ContactElements->Tag[sampleNo];
1864     break;
1865 gross 1062 case(ReducedContactElementsZero):
1866     out=mesh->ContactElements->Tag[sampleNo];
1867     break;
1868 gross 547 case(ContactElementsOne):
1869     out=mesh->ContactElements->Tag[sampleNo];
1870     break;
1871 gross 1062 case(ReducedContactElementsOne):
1872     out=mesh->ContactElements->Tag[sampleNo];
1873 gross 547 break;
1874     case(DegreesOfFreedom):
1875 gross 1062 throw FinleyAdapterException(" Error - DegreesOfFreedom does not support tags.");
1876 gross 547 break;
1877     case(ReducedDegreesOfFreedom):
1878 gross 1062 throw FinleyAdapterException(" Error - ReducedDegreesOfFreedom does not support tags.");
1879 gross 547 break;
1880     default:
1881     stringstream temp;
1882     temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
1883     throw FinleyAdapterException(temp.str());
1884     break;
1885     }
1886     return out;
1887 jgs 110 }
1888    
1889 gross 1062
1890 gross 767 void MeshAdapter::setTags(const int functionSpaceType, const int newTag, const escript::Data& mask) const
1891     {
1892     Finley_Mesh* mesh=m_finleyMesh.get();
1893     escriptDataC tmp=mask.getDataC();
1894     switch(functionSpaceType) {
1895     case(Nodes):
1896     Finley_NodeFile_setTags(mesh->Nodes,newTag,&tmp);
1897     break;
1898 gross 1062 case(ReducedNodes):
1899     throw FinleyAdapterException("Error - ReducedNodes does not support tags");
1900     break;
1901 gross 767 case(DegreesOfFreedom):
1902     throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
1903     break;
1904     case(ReducedDegreesOfFreedom):
1905     throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
1906     break;
1907     case(Elements):
1908     Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
1909     break;
1910 gross 1062 case(ReducedElements):
1911     Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
1912     break;
1913 gross 767 case(FaceElements):
1914     Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
1915     break;
1916 gross 1062 case(ReducedFaceElements):
1917     Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
1918     break;
1919 gross 767 case(Points):
1920     Finley_ElementFile_setTags(mesh->Points,newTag,&tmp);
1921     break;
1922     case(ContactElementsZero):
1923     Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
1924     break;
1925 gross 1062 case(ReducedContactElementsZero):
1926     Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
1927     break;
1928 gross 767 case(ContactElementsOne):
1929     Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
1930     break;
1931 gross 1062 case(ReducedContactElementsOne):
1932     Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
1933     break;
1934 gross 767 default:
1935     stringstream temp;
1936     temp << "Error - Finley does not know anything about function space type " << functionSpaceType;
1937     throw FinleyAdapterException(temp.str());
1938     }
1939     checkFinleyError();
1940     return;
1941     }
1942    
1943 gross 1044 void MeshAdapter::setTagMap(const std::string& name, int tag)
1944     {
1945     Finley_Mesh* mesh=m_finleyMesh.get();
1946     Finley_Mesh_addTagMap(mesh, name.c_str(),tag);
1947     checkPasoError();
1948     // throwStandardException("MeshAdapter::set TagMap is not implemented.");
1949     }
1950 gross 767
1951 gross 1044 int MeshAdapter::getTag(const std::string& name) const
1952     {
1953     Finley_Mesh* mesh=m_finleyMesh.get();
1954     int tag=0;
1955     tag=Finley_Mesh_getTag(mesh, name.c_str());
1956     checkPasoError();
1957     // throwStandardException("MeshAdapter::getTag is not implemented.");
1958     return tag;
1959     }
1960    
1961     bool MeshAdapter::isValidTagName(const std::string& name) const
1962     {
1963     Finley_Mesh* mesh=m_finleyMesh.get();
1964     return Finley_Mesh_isValidTagName(mesh,name.c_str());
1965     }
1966    
1967     std::string MeshAdapter::showTagNames() const
1968     {
1969     stringstream temp;
1970     Finley_Mesh* mesh=m_finleyMesh.get();
1971     Finley_TagMap* tag_map=mesh->TagMap;
1972     while (tag_map) {
1973     temp << tag_map->name;
1974     tag_map=tag_map->next;
1975     if (tag_map) temp << ", ";
1976     }
1977 ksteube 1312 return temp.str();
1978 gross 1044 }
1979    
1980 jgs 82 } // end of namespace

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