/[escript]/trunk/finley/src/CPPAdapter/MeshAdapter.cpp
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Contents of /trunk/finley/src/CPPAdapter/MeshAdapter.cpp

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Revision 1367 - (show annotations)
Wed Dec 19 02:45:07 2007 UTC (11 years, 7 months ago) by gross
File size: 86121 byte(s)
finley can now assemble a transport problem.
1
2 /* $Id$ */
3
4 /*******************************************************
5 *
6 * Copyright 2003-2007 by ACceSS MNRF
7 * Copyright 2007 by University of Queensland
8 *
9 * http://esscc.uq.edu.au
10 * Primary Business: Queensland, Australia
11 * Licensed under the Open Software License version 3.0
12 * http://www.opensource.org/licenses/osl-3.0.php
13 *
14 *******************************************************/
15
16 #include "MeshAdapter.h"
17 #include "escript/Data.h"
18 #include "escript/DataFactory.h"
19 #ifdef USE_NETCDF
20 #include <netcdfcpp.h>
21 #endif
22 extern "C" {
23 #include "escript/blocktimer.h"
24 }
25 #include <vector>
26
27 using namespace std;
28 using namespace escript;
29
30 namespace finley {
31
32 //
33 // define the static constants
34 MeshAdapter::FunctionSpaceNamesMapType MeshAdapter::m_functionSpaceTypeNames;
35 const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM;
36 const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM;
37 const int MeshAdapter::Nodes=FINLEY_NODES;
38 const int MeshAdapter::ReducedNodes=FINLEY_REDUCED_NODES;
39 const int MeshAdapter::Elements=FINLEY_ELEMENTS;
40 const int MeshAdapter::ReducedElements=FINLEY_REDUCED_ELEMENTS;
41 const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS;
42 const int MeshAdapter::ReducedFaceElements=FINLEY_REDUCED_FACE_ELEMENTS;
43 const int MeshAdapter::Points=FINLEY_POINTS;
44 const int MeshAdapter::ContactElementsZero=FINLEY_CONTACT_ELEMENTS_1;
45 const int MeshAdapter::ReducedContactElementsZero=FINLEY_REDUCED_CONTACT_ELEMENTS_1;
46 const int MeshAdapter::ContactElementsOne=FINLEY_CONTACT_ELEMENTS_2;
47 const int MeshAdapter::ReducedContactElementsOne=FINLEY_REDUCED_CONTACT_ELEMENTS_2;
48
49 MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh)
50 {
51 setFunctionSpaceTypeNames();
52 //
53 // need to use a null_deleter as Finley_Mesh_free deletes the pointer
54 // for us.
55 m_finleyMesh.reset(finleyMesh,null_deleter());
56 }
57
58 //
59 // The copy constructor should just increment the use count
60 MeshAdapter::MeshAdapter(const MeshAdapter& in):
61 m_finleyMesh(in.m_finleyMesh)
62 {
63 setFunctionSpaceTypeNames();
64 }
65
66 MeshAdapter::~MeshAdapter()
67 {
68 //
69 // I hope the case for the pointer being zero has been taken care of.
70 // cout << "In MeshAdapter destructor." << endl;
71 if (m_finleyMesh.unique()) {
72 Finley_Mesh_free(m_finleyMesh.get());
73 }
74 }
75
76 int MeshAdapter::getMPISize() const
77 {
78 return m_finleyMesh.get()->MPIInfo->size;
79 }
80 int MeshAdapter::getMPIRank() const
81 {
82 return m_finleyMesh.get()->MPIInfo->rank;
83 }
84
85
86 Finley_Mesh* MeshAdapter::getFinley_Mesh() const {
87 return m_finleyMesh.get();
88 }
89
90 void MeshAdapter::write(const std::string& fileName) const
91 {
92 char *fName = (fileName.size()+1>0) ? TMPMEMALLOC(fileName.size()+1,char) : (char*)NULL;
93 strcpy(fName,fileName.c_str());
94 Finley_Mesh_write(m_finleyMesh.get(),fName);
95 checkFinleyError();
96 TMPMEMFREE(fName);
97 }
98
99 void MeshAdapter::Print_Mesh_Info(const bool full=false) const
100 {
101 Finley_PrintMesh_Info(m_finleyMesh.get(), full);
102 }
103
104 void MeshAdapter::dump(const std::string& fileName) const
105 {
106 #ifdef USE_NETCDF
107 const NcDim* ncdims[12];
108 NcVar *ids, *data;
109 int *int_ptr;
110 Finley_Mesh *mesh = m_finleyMesh.get();
111 Finley_TagMap* tag_map;
112 int num_Tags = 0;
113 int mpi_size = mesh->MPIInfo->size;
114 int mpi_rank = mesh->MPIInfo->rank;
115 int numDim = mesh->Nodes->numDim;
116 int numNodes = mesh->Nodes->numNodes;
117 int num_Elements = mesh->Elements->numElements;
118 int num_FaceElements = mesh->FaceElements->numElements;
119 int num_ContactElements = mesh->ContactElements->numElements;
120 int num_Points = mesh->Points->numElements;
121 int num_Elements_numNodes = mesh->Elements->numNodes;
122 int num_FaceElements_numNodes = mesh->FaceElements->numNodes;
123 int num_ContactElements_numNodes = mesh->ContactElements->numNodes;
124 char *newFileName = Paso_MPI_appendRankToFileName(strdup(fileName.c_str()), mpi_size, mpi_rank);
125
126 /* Figure out how much storage is required for tags */
127 tag_map = mesh->TagMap;
128 if (tag_map) {
129 while (tag_map) {
130 num_Tags++;
131 tag_map=tag_map->next;
132 }
133 }
134
135 // NetCDF error handler
136 NcError err(NcError::verbose_nonfatal);
137 // Create the file.
138 NcFile dataFile(newFileName, NcFile::Replace);
139 // check if writing was successful
140 if (!dataFile.is_valid())
141 throw DataException("Error - MeshAdapter::dump: opening of NetCDF file for output failed: " + *newFileName);
142
143 // Define dimensions (num_Elements and dim_Elements are identical, dim_Elements only appears if > 0)
144 if (! (ncdims[0] = dataFile.add_dim("numNodes", numNodes)) )
145 throw DataException("Error - MeshAdapter::dump: appending dimension numNodes to netCDF file failed: " + *newFileName);
146 if (! (ncdims[1] = dataFile.add_dim("numDim", numDim)) )
147 throw DataException("Error - MeshAdapter::dump: appending dimension numDim to netCDF file failed: " + *newFileName);
148 if (! (ncdims[2] = dataFile.add_dim("mpi_size_plus_1", mpi_size+1)) )
149 throw DataException("Error - MeshAdapter::dump: appending dimension mpi_size to netCDF file failed: " + *newFileName);
150 if (num_Elements>0)
151 if (! (ncdims[3] = dataFile.add_dim("dim_Elements", num_Elements)) )
152 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements to netCDF file failed: " + *newFileName);
153 if (num_FaceElements>0)
154 if (! (ncdims[4] = dataFile.add_dim("dim_FaceElements", num_FaceElements)) )
155 throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements to netCDF file failed: " + *newFileName);
156 if (num_ContactElements>0)
157 if (! (ncdims[5] = dataFile.add_dim("dim_ContactElements", num_ContactElements)) )
158 throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements to netCDF file failed: " + *newFileName);
159 if (num_Points>0)
160 if (! (ncdims[6] = dataFile.add_dim("dim_Points", num_Points)) )
161 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Points to netCDF file failed: " + *newFileName);
162 if (num_Elements>0)
163 if (! (ncdims[7] = dataFile.add_dim("dim_Elements_Nodes", num_Elements_numNodes)) )
164 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements_Nodes to netCDF file failed: " + *newFileName);
165 if (num_FaceElements>0)
166 if (! (ncdims[8] = dataFile.add_dim("dim_FaceElements_numNodes", num_FaceElements_numNodes)) )
167 throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements_numNodes to netCDF file failed: " + *newFileName);
168 if (num_ContactElements>0)
169 if (! (ncdims[9] = dataFile.add_dim("dim_ContactElements_numNodes", num_ContactElements_numNodes)) )
170 throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements_numNodes to netCDF file failed: " + *newFileName);
171 if (num_Tags>0)
172 if (! (ncdims[10] = dataFile.add_dim("dim_Tags", num_Tags)) )
173 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Tags to netCDF file failed: " + *newFileName);
174
175 // Attributes: MPI size, MPI rank, Name, order, reduced_order
176 if (!dataFile.add_att("mpi_size", mpi_size) )
177 throw DataException("Error - MeshAdapter::dump: appending mpi_size to NetCDF file failed: " + *newFileName);
178 if (!dataFile.add_att("mpi_rank", mpi_rank) )
179 throw DataException("Error - MeshAdapter::dump: appending mpi_rank to NetCDF file failed: " + *newFileName);
180 if (!dataFile.add_att("Name",mesh->Name) )
181 throw DataException("Error - MeshAdapter::dump: appending Name to NetCDF file failed: " + *newFileName);
182 if (!dataFile.add_att("numDim",numDim) )
183 throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
184 if (!dataFile.add_att("order",mesh->order) )
185 throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
186 if (!dataFile.add_att("reduced_order",mesh->reduced_order) )
187 throw DataException("Error - MeshAdapter::dump: appending reduced_order to NetCDF file failed: " + *newFileName);
188 if (!dataFile.add_att("numNodes",numNodes) )
189 throw DataException("Error - MeshAdapter::dump: appending numNodes to NetCDF file failed: " + *newFileName);
190 if (!dataFile.add_att("num_Elements",num_Elements) )
191 throw DataException("Error - MeshAdapter::dump: appending num_Elements to NetCDF file failed: " + *newFileName);
192 if (!dataFile.add_att("num_FaceElements",num_FaceElements) )
193 throw DataException("Error - MeshAdapter::dump: appending num_FaceElements to NetCDF file failed: " + *newFileName);
194 if (!dataFile.add_att("num_ContactElements",num_ContactElements) )
195 throw DataException("Error - MeshAdapter::dump: appending num_ContactElements to NetCDF file failed: " + *newFileName);
196 if (!dataFile.add_att("num_Points",num_Points) )
197 throw DataException("Error - MeshAdapter::dump: appending num_Points to NetCDF file failed: " + *newFileName);
198 if (!dataFile.add_att("num_Elements_numNodes",num_Elements_numNodes) )
199 throw DataException("Error - MeshAdapter::dump: appending num_Elements_numNodes to NetCDF file failed: " + *newFileName);
200 if (!dataFile.add_att("num_FaceElements_numNodes",num_FaceElements_numNodes) )
201 throw DataException("Error - MeshAdapter::dump: appending num_FaceElements_numNodes to NetCDF file failed: " + *newFileName);
202 if (!dataFile.add_att("num_ContactElements_numNodes",num_ContactElements_numNodes) )
203 throw DataException("Error - MeshAdapter::dump: appending num_ContactElements_numNodes to NetCDF file failed: " + *newFileName);
204 if (!dataFile.add_att("Elements_TypeId", mesh->Elements->ReferenceElement->Type->TypeId) )
205 throw DataException("Error - MeshAdapter::dump: appending Elements_TypeId to NetCDF file failed: " + *newFileName);
206 if (!dataFile.add_att("FaceElements_TypeId", mesh->FaceElements->ReferenceElement->Type->TypeId) )
207 throw DataException("Error - MeshAdapter::dump: appending FaceElements_TypeId to NetCDF file failed: " + *newFileName);
208 if (!dataFile.add_att("ContactElements_TypeId", mesh->ContactElements->ReferenceElement->Type->TypeId) )
209 throw DataException("Error - MeshAdapter::dump: appending ContactElements_TypeId to NetCDF file failed: " + *newFileName);
210 if (!dataFile.add_att("Points_TypeId", mesh->Points->ReferenceElement->Type->TypeId) )
211 throw DataException("Error - MeshAdapter::dump: appending Points_TypeId to NetCDF file failed: " + *newFileName);
212 if (!dataFile.add_att("num_Tags", num_Tags) )
213 throw DataException("Error - MeshAdapter::dump: appending num_Tags to NetCDF file failed: " + *newFileName);
214
215 // // // // // Nodes // // // // //
216
217 // Only write nodes if non-empty because NetCDF doesn't like empty arrays (it treats them as NC_UNLIMITED)
218 if (numNodes>0) {
219
220 // Nodes Id
221 if (! ( ids = dataFile.add_var("Nodes_Id", ncInt, ncdims[0])) )
222 throw DataException("Error - MeshAdapter::dump: appending Nodes_Id to netCDF file failed: " + *newFileName);
223 int_ptr = &mesh->Nodes->Id[0];
224 if (! (ids->put(int_ptr, numNodes)) )
225 throw DataException("Error - MeshAdapter::dump: copy Nodes_Id to netCDF buffer failed: " + *newFileName);
226
227 // Nodes Tag
228 if (! ( ids = dataFile.add_var("Nodes_Tag", ncInt, ncdims[0])) )
229 throw DataException("Error - MeshAdapter::dump: appending Nodes_Tag to netCDF file failed: " + *newFileName);
230 int_ptr = &mesh->Nodes->Tag[0];
231 if (! (ids->put(int_ptr, numNodes)) )
232 throw DataException("Error - MeshAdapter::dump: copy Nodes_Tag to netCDF buffer failed: " + *newFileName);
233
234 // Nodes gDOF
235 if (! ( ids = dataFile.add_var("Nodes_gDOF", ncInt, ncdims[0])) )
236 throw DataException("Error - MeshAdapter::dump: appending Nodes_gDOF to netCDF file failed: " + *newFileName);
237 int_ptr = &mesh->Nodes->globalDegreesOfFreedom[0];
238 if (! (ids->put(int_ptr, numNodes)) )
239 throw DataException("Error - MeshAdapter::dump: copy Nodes_gDOF to netCDF buffer failed: " + *newFileName);
240
241 // Nodes global node index
242 if (! ( ids = dataFile.add_var("Nodes_gNI", ncInt, ncdims[0])) )
243 throw DataException("Error - MeshAdapter::dump: appending Nodes_gNI to netCDF file failed: " + *newFileName);
244 int_ptr = &mesh->Nodes->globalNodesIndex[0];
245 if (! (ids->put(int_ptr, numNodes)) )
246 throw DataException("Error - MeshAdapter::dump: copy Nodes_gNI to netCDF buffer failed: " + *newFileName);
247
248 // Nodes grDof
249 if (! ( ids = dataFile.add_var("Nodes_grDfI", ncInt, ncdims[0])) )
250 throw DataException("Error - MeshAdapter::dump: appending Nodes_grDfI to netCDF file failed: " + *newFileName);
251 int_ptr = &mesh->Nodes->globalReducedDOFIndex[0];
252 if (! (ids->put(int_ptr, numNodes)) )
253 throw DataException("Error - MeshAdapter::dump: copy Nodes_grDfI to netCDF buffer failed: " + *newFileName);
254
255 // Nodes grNI
256 if (! ( ids = dataFile.add_var("Nodes_grNI", ncInt, ncdims[0])) )
257 throw DataException("Error - MeshAdapter::dump: appending Nodes_grNI to netCDF file failed: " + *newFileName);
258 int_ptr = &mesh->Nodes->globalReducedNodesIndex[0];
259 if (! (ids->put(int_ptr, numNodes)) )
260 throw DataException("Error - MeshAdapter::dump: copy Nodes_grNI to netCDF buffer failed: " + *newFileName);
261
262 // Nodes Coordinates
263 if (! ( ids = dataFile.add_var("Nodes_Coordinates", ncDouble, ncdims[0], ncdims[1]) ) )
264 throw DataException("Error - MeshAdapter::dump: appending Nodes_Coordinates to netCDF file failed: " + *newFileName);
265 if (! (ids->put(&(mesh->Nodes->Coordinates[INDEX2(0,0,numDim)]), numNodes, numDim)) )
266 throw DataException("Error - MeshAdapter::dump: copy Nodes_Coordinates to netCDF buffer failed: " + *newFileName);
267
268 // Nodes degreesOfFreedomDistribution
269 if (! ( ids = dataFile.add_var("Nodes_DofDistribution", ncInt, ncdims[2])) )
270 throw DataException("Error - MeshAdapter::dump: appending Nodes_DofDistribution to netCDF file failed: " + *newFileName);
271 int_ptr = &mesh->Nodes->degreesOfFreedomDistribution->first_component[0];
272 if (! (ids->put(int_ptr, mpi_size+1)) )
273 throw DataException("Error - MeshAdapter::dump: copy Nodes_DofDistribution to netCDF buffer failed: " + *newFileName);
274
275 }
276
277 // // // // // Elements // // // // //
278
279 if (num_Elements>0) {
280
281 // Temp storage to gather node IDs
282 int *Elements_Nodes = TMPMEMALLOC(num_Elements*num_Elements_numNodes,int);
283
284 // Elements_Id
285 if (! ( ids = dataFile.add_var("Elements_Id", ncInt, ncdims[3])) )
286 throw DataException("Error - MeshAdapter::dump: appending Elements_Id to netCDF file failed: " + *newFileName);
287 int_ptr = &mesh->Elements->Id[0];
288 if (! (ids->put(int_ptr, num_Elements)) )
289 throw DataException("Error - MeshAdapter::dump: copy Elements_Id to netCDF buffer failed: " + *newFileName);
290
291 // Elements_Tag
292 if (! ( ids = dataFile.add_var("Elements_Tag", ncInt, ncdims[3])) )
293 throw DataException("Error - MeshAdapter::dump: appending Elements_Tag to netCDF file failed: " + *newFileName);
294 int_ptr = &mesh->Elements->Tag[0];
295 if (! (ids->put(int_ptr, num_Elements)) )
296 throw DataException("Error - MeshAdapter::dump: copy Elements_Tag to netCDF buffer failed: " + *newFileName);
297
298 // Elements_Owner
299 if (! ( ids = dataFile.add_var("Elements_Owner", ncInt, ncdims[3])) )
300 throw DataException("Error - MeshAdapter::dump: appending Elements_Owner to netCDF file failed: " + *newFileName);
301 int_ptr = &mesh->Elements->Owner[0];
302 if (! (ids->put(int_ptr, num_Elements)) )
303 throw DataException("Error - MeshAdapter::dump: copy Elements_Owner to netCDF buffer failed: " + *newFileName);
304
305 // Elements_Color
306 if (! ( ids = dataFile.add_var("Elements_Color", ncInt, ncdims[3])) )
307 throw DataException("Error - MeshAdapter::dump: appending Elements_Color to netCDF file failed: " + *newFileName);
308 int_ptr = &mesh->Elements->Color[0];
309 if (! (ids->put(int_ptr, num_Elements)) )
310 throw DataException("Error - MeshAdapter::dump: copy Elements_Color to netCDF buffer failed: " + *newFileName);
311
312 // Elements_Nodes
313 for (int i=0; i<num_Elements; i++)
314 for (int j=0; j<num_Elements_numNodes; j++)
315 Elements_Nodes[INDEX2(j,i,num_Elements_numNodes)] = mesh->Nodes->Id[mesh->Elements->Nodes[INDEX2(j,i,num_Elements_numNodes)]];
316 if (! ( ids = dataFile.add_var("Elements_Nodes", ncInt, ncdims[3], ncdims[7]) ) )
317 throw DataException("Error - MeshAdapter::dump: appending Elements_Nodes to netCDF file failed: " + *newFileName);
318 if (! (ids->put(&(Elements_Nodes[0]), num_Elements, num_Elements_numNodes)) )
319 throw DataException("Error - MeshAdapter::dump: copy Elements_Nodes to netCDF buffer failed: " + *newFileName);
320
321 TMPMEMFREE(Elements_Nodes);
322
323 }
324
325 // // // // // Face_Elements // // // // //
326
327 if (num_FaceElements>0) {
328
329 // Temp storage to gather node IDs
330 int *FaceElements_Nodes = TMPMEMALLOC(num_FaceElements*num_FaceElements_numNodes,int);
331
332 // FaceElements_Id
333 if (! ( ids = dataFile.add_var("FaceElements_Id", ncInt, ncdims[4])) )
334 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Id to netCDF file failed: " + *newFileName);
335 int_ptr = &mesh->FaceElements->Id[0];
336 if (! (ids->put(int_ptr, num_FaceElements)) )
337 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Id to netCDF buffer failed: " + *newFileName);
338
339 // FaceElements_Tag
340 if (! ( ids = dataFile.add_var("FaceElements_Tag", ncInt, ncdims[4])) )
341 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Tag to netCDF file failed: " + *newFileName);
342 int_ptr = &mesh->FaceElements->Tag[0];
343 if (! (ids->put(int_ptr, num_FaceElements)) )
344 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Tag to netCDF buffer failed: " + *newFileName);
345
346 // FaceElements_Owner
347 if (! ( ids = dataFile.add_var("FaceElements_Owner", ncInt, ncdims[4])) )
348 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Owner to netCDF file failed: " + *newFileName);
349 int_ptr = &mesh->FaceElements->Owner[0];
350 if (! (ids->put(int_ptr, num_FaceElements)) )
351 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Owner to netCDF buffer failed: " + *newFileName);
352
353 // FaceElements_Color
354 if (! ( ids = dataFile.add_var("FaceElements_Color", ncInt, ncdims[4])) )
355 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Color to netCDF file failed: " + *newFileName);
356 int_ptr = &mesh->FaceElements->Color[0];
357 if (! (ids->put(int_ptr, num_FaceElements)) )
358 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Color to netCDF buffer failed: " + *newFileName);
359
360 // FaceElements_Nodes
361 for (int i=0; i<num_FaceElements; i++)
362 for (int j=0; j<num_FaceElements_numNodes; j++)
363 FaceElements_Nodes[INDEX2(j,i,num_FaceElements_numNodes)] = mesh->Nodes->Id[mesh->FaceElements->Nodes[INDEX2(j,i,num_FaceElements_numNodes)]];
364 if (! ( ids = dataFile.add_var("FaceElements_Nodes", ncInt, ncdims[4], ncdims[8]) ) )
365 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Nodes to netCDF file failed: " + *newFileName);
366 if (! (ids->put(&(FaceElements_Nodes[0]), num_FaceElements, num_FaceElements_numNodes)) )
367 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Nodes to netCDF buffer failed: " + *newFileName);
368
369 TMPMEMFREE(FaceElements_Nodes);
370
371 }
372
373 // // // // // Contact_Elements // // // // //
374
375 if (num_ContactElements>0) {
376
377 // Temp storage to gather node IDs
378 int *ContactElements_Nodes = TMPMEMALLOC(num_ContactElements*num_ContactElements_numNodes,int);
379
380 // ContactElements_Id
381 if (! ( ids = dataFile.add_var("ContactElements_Id", ncInt, ncdims[5])) )
382 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Id to netCDF file failed: " + *newFileName);
383 int_ptr = &mesh->ContactElements->Id[0];
384 if (! (ids->put(int_ptr, num_ContactElements)) )
385 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Id to netCDF buffer failed: " + *newFileName);
386
387 // ContactElements_Tag
388 if (! ( ids = dataFile.add_var("ContactElements_Tag", ncInt, ncdims[5])) )
389 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Tag to netCDF file failed: " + *newFileName);
390 int_ptr = &mesh->ContactElements->Tag[0];
391 if (! (ids->put(int_ptr, num_ContactElements)) )
392 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Tag to netCDF buffer failed: " + *newFileName);
393
394 // ContactElements_Owner
395 if (! ( ids = dataFile.add_var("ContactElements_Owner", ncInt, ncdims[5])) )
396 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Owner to netCDF file failed: " + *newFileName);
397 int_ptr = &mesh->ContactElements->Owner[0];
398 if (! (ids->put(int_ptr, num_ContactElements)) )
399 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Owner to netCDF buffer failed: " + *newFileName);
400
401 // ContactElements_Color
402 if (! ( ids = dataFile.add_var("ContactElements_Color", ncInt, ncdims[5])) )
403 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Color to netCDF file failed: " + *newFileName);
404 int_ptr = &mesh->ContactElements->Color[0];
405 if (! (ids->put(int_ptr, num_ContactElements)) )
406 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Color to netCDF buffer failed: " + *newFileName);
407
408 // ContactElements_Nodes
409 for (int i=0; i<num_ContactElements; i++)
410 for (int j=0; j<num_ContactElements_numNodes; j++)
411 ContactElements_Nodes[INDEX2(j,i,num_ContactElements_numNodes)] = mesh->Nodes->Id[mesh->ContactElements->Nodes[INDEX2(j,i,num_ContactElements_numNodes)]];
412 if (! ( ids = dataFile.add_var("ContactElements_Nodes", ncInt, ncdims[5], ncdims[9]) ) )
413 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Nodes to netCDF file failed: " + *newFileName);
414 if (! (ids->put(&(ContactElements_Nodes[0]), num_ContactElements, num_ContactElements_numNodes)) )
415 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Nodes to netCDF buffer failed: " + *newFileName);
416
417 TMPMEMFREE(ContactElements_Nodes);
418
419 }
420
421 // // // // // Points // // // // //
422
423 if (num_Points>0) {
424
425 fprintf(stderr, "\n\n\nWARNING: MeshAdapter::dump has not been tested with Point elements\n\n\n");
426
427 // Temp storage to gather node IDs
428 int *Points_Nodes = TMPMEMALLOC(num_Points,int);
429
430 // Points_Id
431 if (! ( ids = dataFile.add_var("Points_Id", ncInt, ncdims[6])) )
432 throw DataException("Error - MeshAdapter::dump: appending Points_Id to netCDF file failed: " + *newFileName);
433 int_ptr = &mesh->Points->Id[0];
434 if (! (ids->put(int_ptr, num_Points)) )
435 throw DataException("Error - MeshAdapter::dump: copy Points_Id to netCDF buffer failed: " + *newFileName);
436
437 // Points_Tag
438 if (! ( ids = dataFile.add_var("Points_Tag", ncInt, ncdims[6])) )
439 throw DataException("Error - MeshAdapter::dump: appending Points_Tag to netCDF file failed: " + *newFileName);
440 int_ptr = &mesh->Points->Tag[0];
441 if (! (ids->put(int_ptr, num_Points)) )
442 throw DataException("Error - MeshAdapter::dump: copy Points_Tag to netCDF buffer failed: " + *newFileName);
443
444 // Points_Owner
445 if (! ( ids = dataFile.add_var("Points_Owner", ncInt, ncdims[6])) )
446 throw DataException("Error - MeshAdapter::dump: appending Points_Owner to netCDF file failed: " + *newFileName);
447 int_ptr = &mesh->Points->Owner[0];
448 if (! (ids->put(int_ptr, num_Points)) )
449 throw DataException("Error - MeshAdapter::dump: copy Points_Owner to netCDF buffer failed: " + *newFileName);
450
451 // Points_Color
452 if (! ( ids = dataFile.add_var("Points_Color", ncInt, ncdims[6])) )
453 throw DataException("Error - MeshAdapter::dump: appending Points_Color to netCDF file failed: " + *newFileName);
454 int_ptr = &mesh->Points->Color[0];
455 if (! (ids->put(int_ptr, num_Points)) )
456 throw DataException("Error - MeshAdapter::dump: copy Points_Color to netCDF buffer failed: " + *newFileName);
457
458 // Points_Nodes
459 // mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]]
460 for (int i=0; i<num_Points; i++)
461 Points_Nodes[i] = mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]];
462 if (! ( ids = dataFile.add_var("Points_Nodes", ncInt, ncdims[6]) ) )
463 throw DataException("Error - MeshAdapter::dump: appending Points_Nodes to netCDF file failed: " + *newFileName);
464 if (! (ids->put(&(Points_Nodes[0]), num_Points)) )
465 throw DataException("Error - MeshAdapter::dump: copy Points_Nodes to netCDF buffer failed: " + *newFileName);
466
467 TMPMEMFREE(Points_Nodes);
468
469 }
470
471 // // // // // TagMap // // // // //
472
473 if (num_Tags>0) {
474
475 // Temp storage to gather node IDs
476 int *Tags_keys = TMPMEMALLOC(num_Tags, int);
477 char name_temp[4096];
478
479 /* Copy tag data into temp arrays */
480 tag_map = mesh->TagMap;
481 if (tag_map) {
482 int i = 0;
483 while (tag_map) {
484 Tags_keys[i++] = tag_map->tag_key;
485 tag_map=tag_map->next;
486 }
487 }
488
489 // Tags_keys
490 if (! ( ids = dataFile.add_var("Tags_keys", ncInt, ncdims[10])) )
491 throw DataException("Error - MeshAdapter::dump: appending Tags_keys to netCDF file failed: " + *newFileName);
492 int_ptr = &Tags_keys[0];
493 if (! (ids->put(int_ptr, num_Tags)) )
494 throw DataException("Error - MeshAdapter::dump: copy Tags_keys to netCDF buffer failed: " + *newFileName);
495
496 // Tags_names_*
497 // This is an array of strings, it should be stored as an array but instead I have hacked in one attribute per string
498 // because the NetCDF manual doesn't tell how to do an array of strings
499 tag_map = mesh->TagMap;
500 if (tag_map) {
501 int i = 0;
502 while (tag_map) {
503 sprintf(name_temp, "Tags_name_%d", i);
504 if (!dataFile.add_att(name_temp, tag_map->name) )
505 throw DataException("Error - MeshAdapter::dump: appending Tags_names_ to NetCDF file failed: " + *newFileName);
506 tag_map=tag_map->next;
507 i++;
508 }
509 }
510
511 TMPMEMFREE(Tags_keys);
512
513 }
514
515
516 // NetCDF file is closed by destructor of NcFile object
517 #else
518 Finley_setError(IO_ERROR, "MeshAdapter::dump: not configured with NetCDF. Please contact your installation manager.");
519 #endif /* USE_NETCDF */
520 checkFinleyError();
521 }
522
523 string MeshAdapter::getDescription() const
524 {
525 return "FinleyMesh";
526 }
527
528 string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const
529 {
530 FunctionSpaceNamesMapType::iterator loc;
531 loc=m_functionSpaceTypeNames.find(functionSpaceType);
532 if (loc==m_functionSpaceTypeNames.end()) {
533 return "Invalid function space type code.";
534 } else {
535 return loc->second;
536 }
537 }
538
539 bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const
540 {
541 FunctionSpaceNamesMapType::iterator loc;
542 loc=m_functionSpaceTypeNames.find(functionSpaceType);
543 return (loc!=m_functionSpaceTypeNames.end());
544 }
545
546 void MeshAdapter::setFunctionSpaceTypeNames()
547 {
548 m_functionSpaceTypeNames.insert
549 (FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom"));
550 m_functionSpaceTypeNames.insert
551 (FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom"));
552 m_functionSpaceTypeNames.insert
553 (FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes"));
554 m_functionSpaceTypeNames.insert
555 (FunctionSpaceNamesMapType::value_type(ReducedNodes,"Finley_Reduced_Nodes"));
556 m_functionSpaceTypeNames.insert
557 (FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements"));
558 m_functionSpaceTypeNames.insert
559 (FunctionSpaceNamesMapType::value_type(ReducedElements,"Finley_Reduced_Elements"));
560 m_functionSpaceTypeNames.insert
561 (FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements"));
562 m_functionSpaceTypeNames.insert
563 (FunctionSpaceNamesMapType::value_type(ReducedFaceElements,"Finley_Reduced_Face_Elements"));
564 m_functionSpaceTypeNames.insert
565 (FunctionSpaceNamesMapType::value_type(Points,"Finley_Points"));
566 m_functionSpaceTypeNames.insert
567 (FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0"));
568 m_functionSpaceTypeNames.insert
569 (FunctionSpaceNamesMapType::value_type(ReducedContactElementsZero,"Finley_Reduced_Contact_Elements_0"));
570 m_functionSpaceTypeNames.insert
571 (FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1"));
572 m_functionSpaceTypeNames.insert
573 (FunctionSpaceNamesMapType::value_type(ReducedContactElementsOne,"Finley_Reduced_Contact_Elements_1"));
574 }
575
576 int MeshAdapter::getContinuousFunctionCode() const
577 {
578 return Nodes;
579 }
580 int MeshAdapter::getReducedContinuousFunctionCode() const
581 {
582 return ReducedNodes;
583 }
584
585 int MeshAdapter::getFunctionCode() const
586 {
587 return Elements;
588 }
589 int MeshAdapter::getReducedFunctionCode() const
590 {
591 return ReducedElements;
592 }
593
594 int MeshAdapter::getFunctionOnBoundaryCode() const
595 {
596 return FaceElements;
597 }
598 int MeshAdapter::getReducedFunctionOnBoundaryCode() const
599 {
600 return ReducedFaceElements;
601 }
602
603 int MeshAdapter::getFunctionOnContactZeroCode() const
604 {
605 return ContactElementsZero;
606 }
607 int MeshAdapter::getReducedFunctionOnContactZeroCode() const
608 {
609 return ReducedContactElementsZero;
610 }
611
612 int MeshAdapter::getFunctionOnContactOneCode() const
613 {
614 return ContactElementsOne;
615 }
616 int MeshAdapter::getReducedFunctionOnContactOneCode() const
617 {
618 return ReducedContactElementsOne;
619 }
620
621 int MeshAdapter::getSolutionCode() const
622 {
623 return DegreesOfFreedom;
624 }
625
626 int MeshAdapter::getReducedSolutionCode() const
627 {
628 return ReducedDegreesOfFreedom;
629 }
630
631 int MeshAdapter::getDiracDeltaFunctionCode() const
632 {
633 return Points;
634 }
635
636 //
637 // return the spatial dimension of the Mesh:
638 //
639 int MeshAdapter::getDim() const
640 {
641 int numDim=Finley_Mesh_getDim(m_finleyMesh.get());
642 checkFinleyError();
643 return numDim;
644 }
645
646 //
647 // return the number of data points per sample and the number of samples
648 // needed to represent data on a parts of the mesh.
649 //
650 pair<int,int> MeshAdapter::getDataShape(int functionSpaceCode) const
651 {
652 int numDataPointsPerSample=0;
653 int numSamples=0;
654 Finley_Mesh* mesh=m_finleyMesh.get();
655 switch (functionSpaceCode) {
656 case(Nodes):
657 numDataPointsPerSample=1;
658 numSamples=Finley_NodeFile_getNumNodes(mesh->Nodes);
659 break;
660 case(ReducedNodes):
661 numDataPointsPerSample=1;
662 numSamples=Finley_NodeFile_getNumReducedNodes(mesh->Nodes);
663 break;
664 case(Elements):
665 if (mesh->Elements!=NULL) {
666 numSamples=mesh->Elements->numElements;
667 numDataPointsPerSample=mesh->Elements->ReferenceElement->numQuadNodes;
668 }
669 break;
670 case(ReducedElements):
671 if (mesh->Elements!=NULL) {
672 numSamples=mesh->Elements->numElements;
673 numDataPointsPerSample=mesh->Elements->ReferenceElementReducedOrder->numQuadNodes;
674 }
675 break;
676 case(FaceElements):
677 if (mesh->FaceElements!=NULL) {
678 numDataPointsPerSample=mesh->FaceElements->ReferenceElement->numQuadNodes;
679 numSamples=mesh->FaceElements->numElements;
680 }
681 break;
682 case(ReducedFaceElements):
683 if (mesh->FaceElements!=NULL) {
684 numDataPointsPerSample=mesh->FaceElements->ReferenceElementReducedOrder->numQuadNodes;
685 numSamples=mesh->FaceElements->numElements;
686 }
687 break;
688 case(Points):
689 if (mesh->Points!=NULL) {
690 numDataPointsPerSample=1;
691 numSamples=mesh->Points->numElements;
692 }
693 break;
694 case(ContactElementsZero):
695 if (mesh->ContactElements!=NULL) {
696 numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;
697 numSamples=mesh->ContactElements->numElements;
698 }
699 break;
700 case(ReducedContactElementsZero):
701 if (mesh->ContactElements!=NULL) {
702 numDataPointsPerSample=mesh->ContactElements->ReferenceElementReducedOrder->numQuadNodes;
703 numSamples=mesh->ContactElements->numElements;
704 }
705 break;
706 case(ContactElementsOne):
707 if (mesh->ContactElements!=NULL) {
708 numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;
709 numSamples=mesh->ContactElements->numElements;
710 }
711 break;
712 case(ReducedContactElementsOne):
713 if (mesh->ContactElements!=NULL) {
714 numDataPointsPerSample=mesh->ContactElements->ReferenceElementReducedOrder->numQuadNodes;
715 numSamples=mesh->ContactElements->numElements;
716 }
717 break;
718 case(DegreesOfFreedom):
719 if (mesh->Nodes!=NULL) {
720 numDataPointsPerSample=1;
721 numSamples=Finley_NodeFile_getNumDegreesOfFreedom(mesh->Nodes);
722 }
723 break;
724 case(ReducedDegreesOfFreedom):
725 if (mesh->Nodes!=NULL) {
726 numDataPointsPerSample=1;
727 numSamples=Finley_NodeFile_getNumReducedDegreesOfFreedom(mesh->Nodes);
728 }
729 break;
730 default:
731 stringstream temp;
732 temp << "Error - Invalid function space type: " << functionSpaceCode << " for domain: " << getDescription();
733 throw FinleyAdapterException(temp.str());
734 break;
735 }
736 return pair<int,int>(numDataPointsPerSample,numSamples);
737 }
738
739 //
740 // adds linear PDE of second order into a given stiffness matrix and right hand side:
741 //
742 void MeshAdapter::addPDEToSystem(
743 SystemMatrixAdapter& mat, escript::Data& rhs,
744 const escript::Data& A, const escript::Data& B, const escript::Data& C,const escript::Data& D,const escript::Data& X,const escript::Data& Y,
745 const escript::Data& d, const escript::Data& y,
746 const escript::Data& d_contact,const escript::Data& y_contact) const
747 {
748 escriptDataC _rhs=rhs.getDataC();
749 escriptDataC _A =A.getDataC();
750 escriptDataC _B=B.getDataC();
751 escriptDataC _C=C.getDataC();
752 escriptDataC _D=D.getDataC();
753 escriptDataC _X=X.getDataC();
754 escriptDataC _Y=Y.getDataC();
755 escriptDataC _d=d.getDataC();
756 escriptDataC _y=y.getDataC();
757 escriptDataC _d_contact=d_contact.getDataC();
758 escriptDataC _y_contact=y_contact.getDataC();
759
760 Finley_Mesh* mesh=m_finleyMesh.get();
761
762 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,mat.getPaso_SystemMatrix(), &_rhs, &_A, &_B, &_C, &_D, &_X, &_Y );
763 checkFinleyError();
764
765 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, mat.getPaso_SystemMatrix(), &_rhs, 0, 0, 0, &_d, 0, &_y );
766 checkFinleyError();
767
768 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, mat.getPaso_SystemMatrix(), &_rhs , 0, 0, 0, &_d_contact, 0, &_y_contact );
769 checkFinleyError();
770 }
771
772 void MeshAdapter::addPDEToLumpedSystem(
773 escript::Data& mat,
774 const escript::Data& D,
775 const escript::Data& d) const
776 {
777 escriptDataC _mat=mat.getDataC();
778 escriptDataC _D=D.getDataC();
779 escriptDataC _d=d.getDataC();
780
781 Finley_Mesh* mesh=m_finleyMesh.get();
782
783 Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->Elements,&_mat, &_D);
784 Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->FaceElements,&_mat, &_d);
785
786 checkFinleyError();
787 }
788
789
790 //
791 // adds linear PDE of second order into the right hand side only
792 //
793 void MeshAdapter::addPDEToRHS( escript::Data& rhs, const escript::Data& X,const escript::Data& Y, const escript::Data& y, const escript::Data& y_contact) const
794 {
795 Finley_Mesh* mesh=m_finleyMesh.get();
796
797 escriptDataC _rhs=rhs.getDataC();
798 escriptDataC _X=X.getDataC();
799 escriptDataC _Y=Y.getDataC();
800 escriptDataC _y=y.getDataC();
801 escriptDataC _y_contact=y_contact.getDataC();
802
803 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements, 0, &_rhs, 0, 0, 0, 0, &_X, &_Y );
804 checkFinleyError();
805
806 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, 0, &_rhs, 0, 0, 0, 0, 0, &_y );
807 checkFinleyError();
808
809 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, 0, &_rhs , 0, 0, 0, 0, 0, &_y_contact );
810 checkFinleyError();
811 }
812 //
813 // adds PDE of second order into a transport problem
814 //
815 void MeshAdapter::addPDEToTransportProblem(
816 TransportProblemAdapter& tp, escript::Data& source, const escript::Data& M,
817 const escript::Data& A, const escript::Data& B, const escript::Data& C,const escript::Data& D,const escript::Data& X,const escript::Data& Y,
818 const escript::Data& d, const escript::Data& y,
819 const escript::Data& d_contact,const escript::Data& y_contact) const
820 {
821 DataArrayView::ShapeType shape;
822 escript:: Data tmp(0.0,M.getDataPointShape(),tp.getFunctionSpace(),true);
823 escriptDataC _source=source.getDataC();
824 escriptDataC _tmp=tmp.getDataC();
825 escriptDataC _M=M.getDataC();
826 escriptDataC _A=A.getDataC();
827 escriptDataC _B=B.getDataC();
828 escriptDataC _C=C.getDataC();
829 escriptDataC _D=D.getDataC();
830 escriptDataC _X=X.getDataC();
831 escriptDataC _Y=Y.getDataC();
832 escriptDataC _d=d.getDataC();
833 escriptDataC _y=y.getDataC();
834 escriptDataC _d_contact=d_contact.getDataC();
835 escriptDataC _y_contact=y_contact.getDataC();
836
837 Finley_Mesh* mesh=m_finleyMesh.get();
838 Paso_FCTransportProblem* _tp = tp.getPaso_FCTransportProblem();
839
840
841 Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->Elements,&_tmp, &_M);
842 checkFinleyError();
843 /* add mass matix to lumped mass matrix of transport problem */
844 double* tmp_prt=getSampleData(&_tmp,0);
845 int i;
846 int n=Paso_FCTransportProblem_getTotalNumRows(_tp);
847 #pragma omp parallel for private(i) schedule(static)
848 for (i=0;i<n ;++i) _tp->lumped_mass_matrix[i]+=tmp_prt[i];
849
850 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->transport_matrix, &_source, &_A, 0, 0, &_D, &_X, &_Y );
851 checkFinleyError();
852
853 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->flux_matrix, &_source, 0, &_B, &_C, 0, 0, 0 );
854 checkFinleyError();
855
856 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, _tp->transport_matrix, &_source, 0, 0, 0, &_d, 0, &_y );
857 checkFinleyError();
858
859 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, _tp->transport_matrix, &_source , 0, 0, 0, &_d_contact, 0, &_y_contact );
860 checkFinleyError();
861 }
862
863 //
864 // interpolates data between different function spaces:
865 //
866 void MeshAdapter::interpolateOnDomain(escript::Data& target,const escript::Data& in) const
867 {
868 const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(in.getFunctionSpace().getDomain());
869 const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());
870 if (inDomain!=*this)
871 throw FinleyAdapterException("Error - Illegal domain of interpolant.");
872 if (targetDomain!=*this)
873 throw FinleyAdapterException("Error - Illegal domain of interpolation target.");
874
875 Finley_Mesh* mesh=m_finleyMesh.get();
876 escriptDataC _target=target.getDataC();
877 escriptDataC _in=in.getDataC();
878 switch(in.getFunctionSpace().getTypeCode()) {
879 case(Nodes):
880 switch(target.getFunctionSpace().getTypeCode()) {
881 case(Nodes):
882 case(ReducedNodes):
883 case(DegreesOfFreedom):
884 case(ReducedDegreesOfFreedom):
885 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
886 break;
887 case(Elements):
888 case(ReducedElements):
889 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
890 break;
891 case(FaceElements):
892 case(ReducedFaceElements):
893 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
894 break;
895 case(Points):
896 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
897 break;
898 case(ContactElementsZero):
899 case(ReducedContactElementsZero):
900 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
901 break;
902 case(ContactElementsOne):
903 case(ReducedContactElementsOne):
904 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
905 break;
906 default:
907 stringstream temp;
908 temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
909 throw FinleyAdapterException(temp.str());
910 break;
911 }
912 break;
913 case(ReducedNodes):
914 switch(target.getFunctionSpace().getTypeCode()) {
915 case(Nodes):
916 case(ReducedNodes):
917 case(DegreesOfFreedom):
918 case(ReducedDegreesOfFreedom):
919 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
920 break;
921 case(Elements):
922 case(ReducedElements):
923 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
924 break;
925 case(FaceElements):
926 case(ReducedFaceElements):
927 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
928 break;
929 case(Points):
930 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
931 break;
932 case(ContactElementsZero):
933 case(ReducedContactElementsZero):
934 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
935 break;
936 case(ContactElementsOne):
937 case(ReducedContactElementsOne):
938 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
939 break;
940 default:
941 stringstream temp;
942 temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
943 throw FinleyAdapterException(temp.str());
944 break;
945 }
946 break;
947 case(Elements):
948 if (target.getFunctionSpace().getTypeCode()==Elements) {
949 Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
950 } else if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
951 Finley_Assemble_AverageElementData(mesh->Elements,&_target,&_in);
952 } else {
953 throw FinleyAdapterException("Error - No interpolation with data on elements possible.");
954 }
955 break;
956 case(ReducedElements):
957 if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
958 Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
959 } else {
960 throw FinleyAdapterException("Error - No interpolation with data on elements with reduced integration order possible.");
961 }
962 break;
963 case(FaceElements):
964 if (target.getFunctionSpace().getTypeCode()==FaceElements) {
965 Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
966 } else if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
967 Finley_Assemble_AverageElementData(mesh->FaceElements,&_target,&_in);
968 } else {
969 throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");
970 }
971 break;
972 case(ReducedFaceElements):
973 cout << "A\n";
974 if (target.getFunctionSpace().getTypeCode()==FaceElements) {
975 cout << "B\n";
976 Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
977 cout << "C\n";
978 throw FinleyAdapterException("A");
979 } else {
980 throw FinleyAdapterException("Error - No interpolation with data on face elements with reduced integration order possible.");
981 }
982 cout << "A\n";
983 break;
984 case(Points):
985 if (target.getFunctionSpace().getTypeCode()==Points) {
986 Finley_Assemble_CopyElementData(mesh->Points,&_target,&_in);
987 } else {
988 throw FinleyAdapterException("Error - No interpolation with data on points possible.");
989 }
990 break;
991 case(ContactElementsZero):
992 case(ContactElementsOne):
993 if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {
994 Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
995 } else if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
996 Finley_Assemble_AverageElementData(mesh->ContactElements,&_target,&_in);
997 } else {
998 throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");
999 }
1000 break;
1001 case(ReducedContactElementsZero):
1002 case(ReducedContactElementsOne):
1003 if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
1004 Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
1005 } else {
1006 throw FinleyAdapterException("Error - No interpolation with data on contact elements with reduced integration order possible.");
1007 }
1008 break;
1009 case(DegreesOfFreedom):
1010 switch(target.getFunctionSpace().getTypeCode()) {
1011 case(ReducedDegreesOfFreedom):
1012 case(DegreesOfFreedom):
1013 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1014 break;
1015
1016 case(Nodes):
1017 case(ReducedNodes):
1018 if (getMPISize()>1) {
1019 escript::Data temp=escript::Data(in);
1020 temp.expand();
1021 escriptDataC _in2 = temp.getDataC();
1022 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1023 } else {
1024 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1025 }
1026 break;
1027 case(Elements):
1028 case(ReducedElements):
1029 if (getMPISize()>1) {
1030 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1031 escriptDataC _in2 = temp.getDataC();
1032 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1033 } else {
1034 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1035 }
1036 break;
1037 case(FaceElements):
1038 case(ReducedFaceElements):
1039 if (getMPISize()>1) {
1040 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1041 escriptDataC _in2 = temp.getDataC();
1042 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1043
1044 } else {
1045 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1046 }
1047 break;
1048 case(Points):
1049 if (getMPISize()>1) {
1050 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1051 escriptDataC _in2 = temp.getDataC();
1052 } else {
1053 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1054 }
1055 break;
1056 case(ContactElementsZero):
1057 case(ContactElementsOne):
1058 case(ReducedContactElementsZero):
1059 case(ReducedContactElementsOne):
1060 if (getMPISize()>1) {
1061 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1062 escriptDataC _in2 = temp.getDataC();
1063 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1064 } else {
1065 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1066 }
1067 break;
1068 default:
1069 stringstream temp;
1070 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1071 throw FinleyAdapterException(temp.str());
1072 break;
1073 }
1074 break;
1075 case(ReducedDegreesOfFreedom):
1076 switch(target.getFunctionSpace().getTypeCode()) {
1077 case(Nodes):
1078 throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");
1079 break;
1080 case(ReducedNodes):
1081 if (getMPISize()>1) {
1082 escript::Data temp=escript::Data(in);
1083 temp.expand();
1084 escriptDataC _in2 = temp.getDataC();
1085 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1086 } else {
1087 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1088 }
1089 break;
1090 case(DegreesOfFreedom):
1091 throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");
1092 break;
1093 case(ReducedDegreesOfFreedom):
1094 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1095 break;
1096 case(Elements):
1097 case(ReducedElements):
1098 if (getMPISize()>1) {
1099 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1100 escriptDataC _in2 = temp.getDataC();
1101 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1102 } else {
1103 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1104 }
1105 break;
1106 case(FaceElements):
1107 case(ReducedFaceElements):
1108 if (getMPISize()>1) {
1109 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1110 escriptDataC _in2 = temp.getDataC();
1111 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1112 } else {
1113 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1114 }
1115 break;
1116 case(Points):
1117 if (getMPISize()>1) {
1118 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1119 escriptDataC _in2 = temp.getDataC();
1120 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in2,&_target);
1121 } else {
1122 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1123 }
1124 break;
1125 case(ContactElementsZero):
1126 case(ContactElementsOne):
1127 case(ReducedContactElementsZero):
1128 case(ReducedContactElementsOne):
1129 if (getMPISize()>1) {
1130 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1131 escriptDataC _in2 = temp.getDataC();
1132 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1133 } else {
1134 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1135 }
1136 break;
1137 default:
1138 stringstream temp;
1139 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1140 throw FinleyAdapterException(temp.str());
1141 break;
1142 }
1143 break;
1144 default:
1145 stringstream temp;
1146 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();
1147 throw FinleyAdapterException(temp.str());
1148 break;
1149 }
1150 checkFinleyError();
1151 }
1152
1153 //
1154 // copies the locations of sample points into x:
1155 //
1156 void MeshAdapter::setToX(escript::Data& arg) const
1157 {
1158 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1159 if (argDomain!=*this)
1160 throw FinleyAdapterException("Error - Illegal domain of data point locations");
1161 Finley_Mesh* mesh=m_finleyMesh.get();
1162 // in case of values node coordinates we can do the job directly:
1163 if (arg.getFunctionSpace().getTypeCode()==Nodes) {
1164 escriptDataC _arg=arg.getDataC();
1165 Finley_Assemble_NodeCoordinates(mesh->Nodes,&_arg);
1166 } else {
1167 escript::Data tmp_data=Vector(0.0,continuousFunction(asAbstractContinuousDomain()),true);
1168 escriptDataC _tmp_data=tmp_data.getDataC();
1169 Finley_Assemble_NodeCoordinates(mesh->Nodes,&_tmp_data);
1170 // this is then interpolated onto arg:
1171 interpolateOnDomain(arg,tmp_data);
1172 }
1173 checkFinleyError();
1174 }
1175
1176 //
1177 // return the normal vectors at the location of data points as a Data object:
1178 //
1179 void MeshAdapter::setToNormal(escript::Data& normal) const
1180 {
1181 const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain());
1182 if (normalDomain!=*this)
1183 throw FinleyAdapterException("Error - Illegal domain of normal locations");
1184 Finley_Mesh* mesh=m_finleyMesh.get();
1185 escriptDataC _normal=normal.getDataC();
1186 switch(normal.getFunctionSpace().getTypeCode()) {
1187 case(Nodes):
1188 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for nodes");
1189 break;
1190 case(ReducedNodes):
1191 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced nodes");
1192 break;
1193 case(Elements):
1194 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements");
1195 break;
1196 case(ReducedElements):
1197 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements with reduced integration order");
1198 break;
1199 case (FaceElements):
1200 Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1201 break;
1202 case (ReducedFaceElements):
1203 Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1204 break;
1205 case(Points):
1206 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for point elements");
1207 break;
1208 case (ContactElementsOne):
1209 case (ContactElementsZero):
1210 Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1211 break;
1212 case (ReducedContactElementsOne):
1213 case (ReducedContactElementsZero):
1214 Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1215 break;
1216 case(DegreesOfFreedom):
1217 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for degrees of freedom.");
1218 break;
1219 case(ReducedDegreesOfFreedom):
1220 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced degrees of freedom.");
1221 break;
1222 default:
1223 stringstream temp;
1224 temp << "Error - Normal Vectors: Finley does not know anything about function space type " << normal.getFunctionSpace().getTypeCode();
1225 throw FinleyAdapterException(temp.str());
1226 break;
1227 }
1228 checkFinleyError();
1229 }
1230
1231 //
1232 // interpolates data to other domain:
1233 //
1234 void MeshAdapter::interpolateACross(escript::Data& target,const escript::Data& source) const
1235 {
1236 const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());
1237 if (targetDomain!=*this)
1238 throw FinleyAdapterException("Error - Illegal domain of interpolation target");
1239
1240 throw FinleyAdapterException("Error - Finley does not allow interpolation across domains yet.");
1241 }
1242
1243 //
1244 // calculates the integral of a function defined of arg:
1245 //
1246 void MeshAdapter::setToIntegrals(std::vector<double>& integrals,const escript::Data& arg) const
1247 {
1248 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1249 if (argDomain!=*this)
1250 throw FinleyAdapterException("Error - Illegal domain of integration kernel");
1251
1252 double blocktimer_start = blocktimer_time();
1253 Finley_Mesh* mesh=m_finleyMesh.get();
1254 escriptDataC _temp;
1255 escript::Data temp;
1256 escriptDataC _arg=arg.getDataC();
1257 switch(arg.getFunctionSpace().getTypeCode()) {
1258 case(Nodes):
1259 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1260 _temp=temp.getDataC();
1261 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1262 break;
1263 case(ReducedNodes):
1264 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1265 _temp=temp.getDataC();
1266 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1267 break;
1268 case(Elements):
1269 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1270 break;
1271 case(ReducedElements):
1272 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1273 break;
1274 case(FaceElements):
1275 Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1276 break;
1277 case(ReducedFaceElements):
1278 Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1279 break;
1280 case(Points):
1281 throw FinleyAdapterException("Error - Integral of data on points is not supported.");
1282 break;
1283 case(ContactElementsZero):
1284 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1285 break;
1286 case(ReducedContactElementsZero):
1287 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1288 break;
1289 case(ContactElementsOne):
1290 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1291 break;
1292 case(ReducedContactElementsOne):
1293 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1294 break;
1295 case(DegreesOfFreedom):
1296 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1297 _temp=temp.getDataC();
1298 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1299 break;
1300 case(ReducedDegreesOfFreedom):
1301 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1302 _temp=temp.getDataC();
1303 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1304 break;
1305 default:
1306 stringstream temp;
1307 temp << "Error - Integrals: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1308 throw FinleyAdapterException(temp.str());
1309 break;
1310 }
1311 checkFinleyError();
1312 blocktimer_increment("integrate()", blocktimer_start);
1313 }
1314
1315 //
1316 // calculates the gradient of arg:
1317 //
1318 void MeshAdapter::setToGradient(escript::Data& grad,const escript::Data& arg) const
1319 {
1320 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1321 if (argDomain!=*this)
1322 throw FinleyAdapterException("Error - Illegal domain of gradient argument");
1323 const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(grad.getFunctionSpace().getDomain());
1324 if (gradDomain!=*this)
1325 throw FinleyAdapterException("Error - Illegal domain of gradient");
1326
1327 Finley_Mesh* mesh=m_finleyMesh.get();
1328 escriptDataC _grad=grad.getDataC();
1329 escriptDataC nodeDataC;
1330 escript::Data temp;
1331 if (getMPISize()>1) {
1332 if( arg.getFunctionSpace().getTypeCode() == DegreesOfFreedom ) {
1333 temp=escript::Data( arg, continuousFunction(asAbstractContinuousDomain()) );
1334 nodeDataC = temp.getDataC();
1335 } else if( arg.getFunctionSpace().getTypeCode() == ReducedDegreesOfFreedom ) {
1336 temp=escript::Data( arg, reducedContinuousFunction(asAbstractContinuousDomain()) );
1337 nodeDataC = temp.getDataC();
1338 } else {
1339 nodeDataC = arg.getDataC();
1340 }
1341 } else {
1342 nodeDataC = arg.getDataC();
1343 }
1344 switch(grad.getFunctionSpace().getTypeCode()) {
1345 case(Nodes):
1346 throw FinleyAdapterException("Error - Gradient at nodes is not supported.");
1347 break;
1348 case(ReducedNodes):
1349 throw FinleyAdapterException("Error - Gradient at reduced nodes is not supported.");
1350 break;
1351 case(Elements):
1352 Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1353 break;
1354 case(ReducedElements):
1355 Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1356 break;
1357 case(FaceElements):
1358 Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1359 break;
1360 case(ReducedFaceElements):
1361 Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1362 break;
1363 case(Points):
1364 throw FinleyAdapterException("Error - Gradient at points is not supported.");
1365 break;
1366 case(ContactElementsZero):
1367 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1368 break;
1369 case(ReducedContactElementsZero):
1370 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1371 break;
1372 case(ContactElementsOne):
1373 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1374 break;
1375 case(ReducedContactElementsOne):
1376 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1377 break;
1378 case(DegreesOfFreedom):
1379 throw FinleyAdapterException("Error - Gradient at degrees of freedom is not supported.");
1380 break;
1381 case(ReducedDegreesOfFreedom):
1382 throw FinleyAdapterException("Error - Gradient at reduced degrees of freedom is not supported.");
1383 break;
1384 default:
1385 stringstream temp;
1386 temp << "Error - Gradient: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1387 throw FinleyAdapterException(temp.str());
1388 break;
1389 }
1390 checkFinleyError();
1391 }
1392
1393 //
1394 // returns the size of elements:
1395 //
1396 void MeshAdapter::setToSize(escript::Data& size) const
1397 {
1398 Finley_Mesh* mesh=m_finleyMesh.get();
1399 escriptDataC tmp=size.getDataC();
1400 switch(size.getFunctionSpace().getTypeCode()) {
1401 case(Nodes):
1402 throw FinleyAdapterException("Error - Size of nodes is not supported.");
1403 break;
1404 case(ReducedNodes):
1405 throw FinleyAdapterException("Error - Size of reduced nodes is not supported.");
1406 break;
1407 case(Elements):
1408 Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1409 break;
1410 case(ReducedElements):
1411 Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1412 break;
1413 case(FaceElements):
1414 Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1415 break;
1416 case(ReducedFaceElements):
1417 Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1418 break;
1419 case(Points):
1420 throw FinleyAdapterException("Error - Size of point elements is not supported.");
1421 break;
1422 case(ContactElementsZero):
1423 case(ContactElementsOne):
1424 Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1425 break;
1426 case(ReducedContactElementsZero):
1427 case(ReducedContactElementsOne):
1428 Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1429 break;
1430 case(DegreesOfFreedom):
1431 throw FinleyAdapterException("Error - Size of degrees of freedom is not supported.");
1432 break;
1433 case(ReducedDegreesOfFreedom):
1434 throw FinleyAdapterException("Error - Size of reduced degrees of freedom is not supported.");
1435 break;
1436 default:
1437 stringstream temp;
1438 temp << "Error - Element size: Finley does not know anything about function space type " << size.getFunctionSpace().getTypeCode();
1439 throw FinleyAdapterException(temp.str());
1440 break;
1441 }
1442 checkFinleyError();
1443 }
1444
1445 // sets the location of nodes:
1446 void MeshAdapter::setNewX(const escript::Data& new_x)
1447 {
1448 Finley_Mesh* mesh=m_finleyMesh.get();
1449 escriptDataC tmp;
1450 const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(new_x.getFunctionSpace().getDomain());
1451 if (newDomain!=*this)
1452 throw FinleyAdapterException("Error - Illegal domain of new point locations");
1453 tmp = new_x.getDataC();
1454 Finley_Mesh_setCoordinates(mesh,&tmp);
1455 checkFinleyError();
1456 }
1457
1458 // saves a data array in openDX format:
1459 void MeshAdapter::saveDX(const std::string& filename,const boost::python::dict& arg) const
1460 {
1461 int MAX_namelength=256;
1462 const int num_data=boost::python::extract<int>(arg.attr("__len__")());
1463 /* win32 refactor */
1464 char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1465 for(int i=0;i<num_data;i++)
1466 {
1467 names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;
1468 }
1469
1470 char* *c_names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1471 escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;
1472 escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;
1473
1474 boost::python::list keys=arg.keys();
1475 for (int i=0;i<num_data;++i) {
1476 std::string n=boost::python::extract<std::string>(keys[i]);
1477 escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1478 if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)
1479 throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain");
1480 data[i]=d.getDataC();
1481 ptr_data[i]=&(data[i]);
1482 c_names[i]=&(names[i][0]);
1483 if (n.length()>MAX_namelength-1) {
1484 strncpy(c_names[i],n.c_str(),MAX_namelength-1);
1485 c_names[i][MAX_namelength-1]='\0';
1486 } else {
1487 strcpy(c_names[i],n.c_str());
1488 }
1489 }
1490 Finley_Mesh_saveDX(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);
1491 checkFinleyError();
1492
1493 /* win32 refactor */
1494 TMPMEMFREE(c_names);
1495 TMPMEMFREE(data);
1496 TMPMEMFREE(ptr_data);
1497 for(int i=0;i<num_data;i++)
1498 {
1499 TMPMEMFREE(names[i]);
1500 }
1501 TMPMEMFREE(names);
1502
1503 return;
1504 }
1505
1506 // saves a data array in openVTK format:
1507 void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg) const
1508 {
1509 int MAX_namelength=256;
1510 const int num_data=boost::python::extract<int>(arg.attr("__len__")());
1511 /* win32 refactor */
1512 char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1513 for(int i=0;i<num_data;i++)
1514 {
1515 names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;
1516 }
1517
1518 char* *c_names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1519 escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;
1520 escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;
1521
1522 boost::python::list keys=arg.keys();
1523 for (int i=0;i<num_data;++i) {
1524 std::string n=boost::python::extract<std::string>(keys[i]);
1525 escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1526 if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)
1527 throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain");
1528 data[i]=d.getDataC();
1529 ptr_data[i]=&(data[i]);
1530 c_names[i]=&(names[i][0]);
1531 if (n.length()>MAX_namelength-1) {
1532 strncpy(c_names[i],n.c_str(),MAX_namelength-1);
1533 c_names[i][MAX_namelength-1]='\0';
1534 } else {
1535 strcpy(c_names[i],n.c_str());
1536 }
1537 }
1538 Finley_Mesh_saveVTK(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);
1539
1540 checkFinleyError();
1541 /* win32 refactor */
1542 TMPMEMFREE(c_names);
1543 TMPMEMFREE(data);
1544 TMPMEMFREE(ptr_data);
1545 for(int i=0;i<num_data;i++)
1546 {
1547 TMPMEMFREE(names[i]);
1548 }
1549 TMPMEMFREE(names);
1550
1551 return;
1552 }
1553
1554
1555 // creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros:
1556 SystemMatrixAdapter MeshAdapter::newSystemMatrix(
1557 const int row_blocksize,
1558 const escript::FunctionSpace& row_functionspace,
1559 const int column_blocksize,
1560 const escript::FunctionSpace& column_functionspace,
1561 const int type) const
1562 {
1563 int reduceRowOrder=0;
1564 int reduceColOrder=0;
1565 // is the domain right?
1566 const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(row_functionspace.getDomain());
1567 if (row_domain!=*this)
1568 throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator.");
1569 const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(column_functionspace.getDomain());
1570 if (col_domain!=*this)
1571 throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator.");
1572 // is the function space type right
1573 if (row_functionspace.getTypeCode()==DegreesOfFreedom) {
1574 reduceRowOrder=0;
1575 } else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1576 reduceRowOrder=1;
1577 } else {
1578 throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1579 }
1580 if (column_functionspace.getTypeCode()==DegreesOfFreedom) {
1581 reduceColOrder=0;
1582 } else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1583 reduceColOrder=1;
1584 } else {
1585 throw FinleyAdapterException("Error - illegal function space type for system matrix columns.");
1586 }
1587 // generate matrix:
1588
1589 Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder);
1590 checkFinleyError();
1591 Paso_SystemMatrix* fsystemMatrix;
1592 int trilinos = 0;
1593 if (trilinos) {
1594 #ifdef TRILINOS
1595 /* Allocation Epetra_VrbMatrix here */
1596 #endif
1597 }
1598 else {
1599 fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize);
1600 }
1601 checkPasoError();
1602 Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1603 return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace);
1604 }
1605 // creates a TransportProblemAdapter
1606 TransportProblemAdapter MeshAdapter::newTransportProblem(
1607 const double theta,
1608 const double dt_max,
1609 const int blocksize,
1610 const escript::FunctionSpace& functionspace,
1611 const int type) const
1612 {
1613 int reduceOrder=0;
1614 // is the domain right?
1615 const MeshAdapter& domain=dynamic_cast<const MeshAdapter&>(functionspace.getDomain());
1616 if (domain!=*this)
1617 throw FinleyAdapterException("Error - domain of function space does not match the domain of transport problem generator.");
1618 // is the function space type right
1619 if (functionspace.getTypeCode()==DegreesOfFreedom) {
1620 reduceOrder=0;
1621 } else if (functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1622 reduceOrder=1;
1623 } else {
1624 throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1625 }
1626 // generate matrix:
1627
1628 Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceOrder,reduceOrder);
1629 checkFinleyError();
1630 Paso_FCTransportProblem* transportProblem;
1631 transportProblem=Paso_FCTransportProblem_alloc(theta,dt_max,fsystemMatrixPattern,blocksize);
1632 checkPasoError();
1633 Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1634 return TransportProblemAdapter(transportProblem,theta,dt_max,blocksize,functionspace);
1635 }
1636
1637 //
1638 // vtkObject MeshAdapter::createVtkObject() const
1639 // TODO:
1640 //
1641
1642 //
1643 // returns true if data at the atom_type is considered as being cell centered:
1644 bool MeshAdapter::isCellOriented(int functionSpaceCode) const
1645 {
1646 switch(functionSpaceCode) {
1647 case(Nodes):
1648 case(DegreesOfFreedom):
1649 case(ReducedDegreesOfFreedom):
1650 return false;
1651 break;
1652 case(Elements):
1653 case(FaceElements):
1654 case(Points):
1655 case(ContactElementsZero):
1656 case(ContactElementsOne):
1657 case(ReducedElements):
1658 case(ReducedFaceElements):
1659 case(ReducedContactElementsZero):
1660 case(ReducedContactElementsOne):
1661 return true;
1662 break;
1663 default:
1664 stringstream temp;
1665 temp << "Error - Cell: Finley does not know anything about function space type " << functionSpaceCode;
1666 throw FinleyAdapterException(temp.str());
1667 break;
1668 }
1669 checkFinleyError();
1670 return false;
1671 }
1672
1673 bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const
1674 {
1675 switch(functionSpaceType_source) {
1676 case(Nodes):
1677 switch(functionSpaceType_target) {
1678 case(Nodes):
1679 case(ReducedNodes):
1680 case(ReducedDegreesOfFreedom):
1681 case(DegreesOfFreedom):
1682 case(Elements):
1683 case(ReducedElements):
1684 case(FaceElements):
1685 case(ReducedFaceElements):
1686 case(Points):
1687 case(ContactElementsZero):
1688 case(ReducedContactElementsZero):
1689 case(ContactElementsOne):
1690 case(ReducedContactElementsOne):
1691 return true;
1692 default:
1693 stringstream temp;
1694 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1695 throw FinleyAdapterException(temp.str());
1696 }
1697 break;
1698 case(ReducedNodes):
1699 switch(functionSpaceType_target) {
1700 case(ReducedNodes):
1701 case(ReducedDegreesOfFreedom):
1702 case(Elements):
1703 case(ReducedElements):
1704 case(FaceElements):
1705 case(ReducedFaceElements):
1706 case(Points):
1707 case(ContactElementsZero):
1708 case(ReducedContactElementsZero):
1709 case(ContactElementsOne):
1710 case(ReducedContactElementsOne):
1711 return true;
1712 case(Nodes):
1713 case(DegreesOfFreedom):
1714 return false;
1715 default:
1716 stringstream temp;
1717 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1718 throw FinleyAdapterException(temp.str());
1719 }
1720 break;
1721 case(Elements):
1722 if (functionSpaceType_target==Elements) {
1723 return true;
1724 } else if (functionSpaceType_target==ReducedElements) {
1725 return true;
1726 } else {
1727 return false;
1728 }
1729 case(ReducedElements):
1730 if (functionSpaceType_target==ReducedElements) {
1731 return true;
1732 } else {
1733 return false;
1734 }
1735 case(FaceElements):
1736 if (functionSpaceType_target==FaceElements) {
1737 return true;
1738 } else if (functionSpaceType_target==ReducedFaceElements) {
1739 return true;
1740 } else {
1741 return false;
1742 }
1743 case(ReducedFaceElements):
1744 if (functionSpaceType_target==ReducedFaceElements) {
1745 return true;
1746 } else {
1747 return false;
1748 }
1749 case(Points):
1750 if (functionSpaceType_target==Points) {
1751 return true;
1752 } else {
1753 return false;
1754 }
1755 case(ContactElementsZero):
1756 case(ContactElementsOne):
1757 if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {
1758 return true;
1759 } else if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1760 return true;
1761 } else {
1762 return false;
1763 }
1764 case(ReducedContactElementsZero):
1765 case(ReducedContactElementsOne):
1766 if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1767 return true;
1768 } else {
1769 return false;
1770 }
1771 case(DegreesOfFreedom):
1772 switch(functionSpaceType_target) {
1773 case(ReducedDegreesOfFreedom):
1774 case(DegreesOfFreedom):
1775 case(Nodes):
1776 case(ReducedNodes):
1777 case(Elements):
1778 case(ReducedElements):
1779 case(Points):
1780 case(FaceElements):
1781 case(ReducedFaceElements):
1782 case(ContactElementsZero):
1783 case(ReducedContactElementsZero):
1784 case(ContactElementsOne):
1785 case(ReducedContactElementsOne):
1786 return true;
1787 default:
1788 stringstream temp;
1789 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1790 throw FinleyAdapterException(temp.str());
1791 }
1792 break;
1793 case(ReducedDegreesOfFreedom):
1794 switch(functionSpaceType_target) {
1795 case(ReducedDegreesOfFreedom):
1796 case(ReducedNodes):
1797 case(Elements):
1798 case(ReducedElements):
1799 case(FaceElements):
1800 case(ReducedFaceElements):
1801 case(Points):
1802 case(ContactElementsZero):
1803 case(ReducedContactElementsZero):
1804 case(ContactElementsOne):
1805 case(ReducedContactElementsOne):
1806 return true;
1807 case(Nodes):
1808 case(DegreesOfFreedom):
1809 return false;
1810 default:
1811 stringstream temp;
1812 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1813 throw FinleyAdapterException(temp.str());
1814 }
1815 break;
1816 default:
1817 stringstream temp;
1818 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;
1819 throw FinleyAdapterException(temp.str());
1820 break;
1821 }
1822 checkFinleyError();
1823 return false;
1824 }
1825
1826 bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const
1827 {
1828 return false;
1829 }
1830
1831 bool MeshAdapter::operator==(const AbstractDomain& other) const
1832 {
1833 const MeshAdapter* temp=dynamic_cast<const MeshAdapter*>(&other);
1834 if (temp!=0) {
1835 return (m_finleyMesh==temp->m_finleyMesh);
1836 } else {
1837 return false;
1838 }
1839 }
1840
1841 bool MeshAdapter::operator!=(const AbstractDomain& other) const
1842 {
1843 return !(operator==(other));
1844 }
1845
1846 int MeshAdapter::getSystemMatrixTypeId(const int solver, const int package, const bool symmetry) const
1847 {
1848 int out=Paso_SystemMatrix_getSystemMatrixTypeId(SystemMatrixAdapter::mapOptionToPaso(solver),SystemMatrixAdapter::mapOptionToPaso(package),symmetry?1:0);
1849 checkPasoError();
1850 return out;
1851 }
1852
1853 escript::Data MeshAdapter::getX() const
1854 {
1855 return continuousFunction(asAbstractContinuousDomain()).getX();
1856 }
1857
1858 escript::Data MeshAdapter::getNormal() const
1859 {
1860 return functionOnBoundary(asAbstractContinuousDomain()).getNormal();
1861 }
1862
1863 escript::Data MeshAdapter::getSize() const
1864 {
1865 return function(asAbstractContinuousDomain()).getSize();
1866 }
1867
1868 int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const
1869 {
1870 int *out=0,i;
1871 Finley_Mesh* mesh=m_finleyMesh.get();
1872 switch (functionSpaceType) {
1873 case(Nodes):
1874 out=mesh->Nodes->Id;
1875 break;
1876 case(ReducedNodes):
1877 out=mesh->Nodes->reducedNodesId;
1878 break;
1879 case(Elements):
1880 out=mesh->Elements->Id;
1881 break;
1882 case(ReducedElements):
1883 out=mesh->Elements->Id;
1884 break;
1885 case(FaceElements):
1886 out=mesh->FaceElements->Id;
1887 break;
1888 case(ReducedFaceElements):
1889 out=mesh->FaceElements->Id;
1890 break;
1891 case(Points):
1892 out=mesh->Points->Id;
1893 break;
1894 case(ContactElementsZero):
1895 out=mesh->ContactElements->Id;
1896 break;
1897 case(ReducedContactElementsZero):
1898 out=mesh->ContactElements->Id;
1899 break;
1900 case(ContactElementsOne):
1901 out=mesh->ContactElements->Id;
1902 break;
1903 case(ReducedContactElementsOne):
1904 out=mesh->ContactElements->Id;
1905 break;
1906 case(DegreesOfFreedom):
1907 out=mesh->Nodes->degreesOfFreedomId;
1908 break;
1909 case(ReducedDegreesOfFreedom):
1910 out=mesh->Nodes->reducedDegreesOfFreedomId;
1911 break;
1912 default:
1913 stringstream temp;
1914 temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
1915 throw FinleyAdapterException(temp.str());
1916 break;
1917 }
1918 return out;
1919 }
1920 int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const
1921 {
1922 int out=0;
1923 Finley_Mesh* mesh=m_finleyMesh.get();
1924 switch (functionSpaceType) {
1925 case(Nodes):
1926 out=mesh->Nodes->Tag[sampleNo];
1927 break;
1928 case(ReducedNodes):
1929 throw FinleyAdapterException(" Error - ReducedNodes does not support tags.");
1930 break;
1931 case(Elements):
1932 out=mesh->Elements->Tag[sampleNo];
1933 break;
1934 case(ReducedElements):
1935 out=mesh->Elements->Tag[sampleNo];
1936 break;
1937 case(FaceElements):
1938 out=mesh->FaceElements->Tag[sampleNo];
1939 break;
1940 case(ReducedFaceElements):
1941 out=mesh->FaceElements->Tag[sampleNo];
1942 break;
1943 case(Points):
1944 out=mesh->Points->Tag[sampleNo];
1945 break;
1946 case(ContactElementsZero):
1947 out=mesh->ContactElements->Tag[sampleNo];
1948 break;
1949 case(ReducedContactElementsZero):
1950 out=mesh->ContactElements->Tag[sampleNo];
1951 break;
1952 case(ContactElementsOne):
1953 out=mesh->ContactElements->Tag[sampleNo];
1954 break;
1955 case(ReducedContactElementsOne):
1956 out=mesh->ContactElements->Tag[sampleNo];
1957 break;
1958 case(DegreesOfFreedom):
1959 throw FinleyAdapterException(" Error - DegreesOfFreedom does not support tags.");
1960 break;
1961 case(ReducedDegreesOfFreedom):
1962 throw FinleyAdapterException(" Error - ReducedDegreesOfFreedom does not support tags.");
1963 break;
1964 default:
1965 stringstream temp;
1966 temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
1967 throw FinleyAdapterException(temp.str());
1968 break;
1969 }
1970 return out;
1971 }
1972
1973
1974 void MeshAdapter::setTags(const int functionSpaceType, const int newTag, const escript::Data& mask) const
1975 {
1976 Finley_Mesh* mesh=m_finleyMesh.get();
1977 escriptDataC tmp=mask.getDataC();
1978 switch(functionSpaceType) {
1979 case(Nodes):
1980 Finley_NodeFile_setTags(mesh->Nodes,newTag,&tmp);
1981 break;
1982 case(ReducedNodes):
1983 throw FinleyAdapterException("Error - ReducedNodes does not support tags");
1984 break;
1985 case(DegreesOfFreedom):
1986 throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
1987 break;
1988 case(ReducedDegreesOfFreedom):
1989 throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
1990 break;
1991 case(Elements):
1992 Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
1993 break;
1994 case(ReducedElements):
1995 Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
1996 break;
1997 case(FaceElements):
1998 Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
1999 break;
2000 case(ReducedFaceElements):
2001 Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
2002 break;
2003 case(Points):
2004 Finley_ElementFile_setTags(mesh->Points,newTag,&tmp);
2005 break;
2006 case(ContactElementsZero):
2007 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2008 break;
2009 case(ReducedContactElementsZero):
2010 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2011 break;
2012 case(ContactElementsOne):
2013 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2014 break;
2015 case(ReducedContactElementsOne):
2016 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2017 break;
2018 default:
2019 stringstream temp;
2020 temp << "Error - Finley does not know anything about function space type " << functionSpaceType;
2021 throw FinleyAdapterException(temp.str());
2022 }
2023 checkFinleyError();
2024 return;
2025 }
2026
2027 void MeshAdapter::setTagMap(const std::string& name, int tag)
2028 {
2029 Finley_Mesh* mesh=m_finleyMesh.get();
2030 Finley_Mesh_addTagMap(mesh, name.c_str(),tag);
2031 checkPasoError();
2032 // throwStandardException("MeshAdapter::set TagMap is not implemented.");
2033 }
2034
2035 int MeshAdapter::getTag(const std::string& name) const
2036 {
2037 Finley_Mesh* mesh=m_finleyMesh.get();
2038 int tag=0;
2039 tag=Finley_Mesh_getTag(mesh, name.c_str());
2040 checkPasoError();
2041 // throwStandardException("MeshAdapter::getTag is not implemented.");
2042 return tag;
2043 }
2044
2045 bool MeshAdapter::isValidTagName(const std::string& name) const
2046 {
2047 Finley_Mesh* mesh=m_finleyMesh.get();
2048 return Finley_Mesh_isValidTagName(mesh,name.c_str());
2049 }
2050
2051 std::string MeshAdapter::showTagNames() const
2052 {
2053 stringstream temp;
2054 Finley_Mesh* mesh=m_finleyMesh.get();
2055 Finley_TagMap* tag_map=mesh->TagMap;
2056 while (tag_map) {
2057 temp << tag_map->name;
2058 tag_map=tag_map->next;
2059 if (tag_map) temp << ", ";
2060 }
2061 return temp.str();
2062 }
2063
2064 } // end of namespace

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