/[escript]/trunk/finley/src/CPPAdapter/MeshAdapter.cpp
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Contents of /trunk/finley/src/CPPAdapter/MeshAdapter.cpp

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Revision 1464 - (show annotations)
Tue Apr 1 23:27:09 2008 UTC (11 years, 2 months ago) by gross
File size: 85698 byte(s)
bug for interpoltion from reduced solution to elements in MPI fixed.
1
2 /* $Id$ */
3
4 /*******************************************************
5 *
6 * Copyright 2003-2007 by ACceSS MNRF
7 * Copyright 2007 by University of Queensland
8 *
9 * http://esscc.uq.edu.au
10 * Primary Business: Queensland, Australia
11 * Licensed under the Open Software License version 3.0
12 * http://www.opensource.org/licenses/osl-3.0.php
13 *
14 *******************************************************/
15
16 #include "MeshAdapter.h"
17 #include "escript/Data.h"
18 #include "escript/DataFactory.h"
19 #ifdef USE_NETCDF
20 #include <netcdfcpp.h>
21 #endif
22 extern "C" {
23 #include "escript/blocktimer.h"
24 }
25 #include <vector>
26
27 #define IS_THERE_A_REASON_FOR_THIS_MAGIC_NAME_LENGTH 256
28
29 using namespace std;
30 using namespace escript;
31
32 namespace finley {
33
34 //
35 // define the static constants
36 MeshAdapter::FunctionSpaceNamesMapType MeshAdapter::m_functionSpaceTypeNames;
37 const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM;
38 const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM;
39 const int MeshAdapter::Nodes=FINLEY_NODES;
40 const int MeshAdapter::ReducedNodes=FINLEY_REDUCED_NODES;
41 const int MeshAdapter::Elements=FINLEY_ELEMENTS;
42 const int MeshAdapter::ReducedElements=FINLEY_REDUCED_ELEMENTS;
43 const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS;
44 const int MeshAdapter::ReducedFaceElements=FINLEY_REDUCED_FACE_ELEMENTS;
45 const int MeshAdapter::Points=FINLEY_POINTS;
46 const int MeshAdapter::ContactElementsZero=FINLEY_CONTACT_ELEMENTS_1;
47 const int MeshAdapter::ReducedContactElementsZero=FINLEY_REDUCED_CONTACT_ELEMENTS_1;
48 const int MeshAdapter::ContactElementsOne=FINLEY_CONTACT_ELEMENTS_2;
49 const int MeshAdapter::ReducedContactElementsOne=FINLEY_REDUCED_CONTACT_ELEMENTS_2;
50
51 MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh)
52 {
53 setFunctionSpaceTypeNames();
54 //
55 // need to use a null_deleter as Finley_Mesh_free deletes the pointer
56 // for us.
57 m_finleyMesh.reset(finleyMesh,null_deleter());
58 }
59
60 //
61 // The copy constructor should just increment the use count
62 MeshAdapter::MeshAdapter(const MeshAdapter& in):
63 m_finleyMesh(in.m_finleyMesh)
64 {
65 setFunctionSpaceTypeNames();
66 }
67
68 MeshAdapter::~MeshAdapter()
69 {
70 //
71 // I hope the case for the pointer being zero has been taken care of.
72 // cout << "In MeshAdapter destructor." << endl;
73 if (m_finleyMesh.unique()) {
74 Finley_Mesh_free(m_finleyMesh.get());
75 }
76 }
77
78 int MeshAdapter::getMPISize() const
79 {
80 return m_finleyMesh.get()->MPIInfo->size;
81 }
82 int MeshAdapter::getMPIRank() const
83 {
84 return m_finleyMesh.get()->MPIInfo->rank;
85 }
86
87
88 Finley_Mesh* MeshAdapter::getFinley_Mesh() const {
89 return m_finleyMesh.get();
90 }
91
92 void MeshAdapter::write(const std::string& fileName) const
93 {
94 char *fName = (fileName.size()+1>0) ? TMPMEMALLOC(fileName.size()+1,char) : (char*)NULL;
95 strcpy(fName,fileName.c_str());
96 Finley_Mesh_write(m_finleyMesh.get(),fName);
97 checkFinleyError();
98 TMPMEMFREE(fName);
99 }
100
101 void MeshAdapter::Print_Mesh_Info(const bool full=false) const
102 {
103 Finley_PrintMesh_Info(m_finleyMesh.get(), full);
104 }
105
106 void MeshAdapter::dump(const std::string& fileName) const
107 {
108 #ifdef USE_NETCDF
109 const NcDim* ncdims[12];
110 NcVar *ids, *data;
111 int *int_ptr;
112 Finley_Mesh *mesh = m_finleyMesh.get();
113 Finley_TagMap* tag_map;
114 int num_Tags = 0;
115 int mpi_size = mesh->MPIInfo->size;
116 int mpi_rank = mesh->MPIInfo->rank;
117 int numDim = mesh->Nodes->numDim;
118 int numNodes = mesh->Nodes->numNodes;
119 int num_Elements = mesh->Elements->numElements;
120 int num_FaceElements = mesh->FaceElements->numElements;
121 int num_ContactElements = mesh->ContactElements->numElements;
122 int num_Points = mesh->Points->numElements;
123 int num_Elements_numNodes = mesh->Elements->numNodes;
124 int num_FaceElements_numNodes = mesh->FaceElements->numNodes;
125 int num_ContactElements_numNodes = mesh->ContactElements->numNodes;
126 char *newFileName = Paso_MPI_appendRankToFileName(strdup(fileName.c_str()), mpi_size, mpi_rank);
127
128 /* Figure out how much storage is required for tags */
129 tag_map = mesh->TagMap;
130 if (tag_map) {
131 while (tag_map) {
132 num_Tags++;
133 tag_map=tag_map->next;
134 }
135 }
136
137 // NetCDF error handler
138 NcError err(NcError::verbose_nonfatal);
139 // Create the file.
140 NcFile dataFile(newFileName, NcFile::Replace);
141 // check if writing was successful
142 if (!dataFile.is_valid())
143 throw DataException("Error - MeshAdapter::dump: opening of NetCDF file for output failed: " + *newFileName);
144
145 // Define dimensions (num_Elements and dim_Elements are identical, dim_Elements only appears if > 0)
146 if (! (ncdims[0] = dataFile.add_dim("numNodes", numNodes)) )
147 throw DataException("Error - MeshAdapter::dump: appending dimension numNodes to netCDF file failed: " + *newFileName);
148 if (! (ncdims[1] = dataFile.add_dim("numDim", numDim)) )
149 throw DataException("Error - MeshAdapter::dump: appending dimension numDim to netCDF file failed: " + *newFileName);
150 if (! (ncdims[2] = dataFile.add_dim("mpi_size_plus_1", mpi_size+1)) )
151 throw DataException("Error - MeshAdapter::dump: appending dimension mpi_size to netCDF file failed: " + *newFileName);
152 if (num_Elements>0)
153 if (! (ncdims[3] = dataFile.add_dim("dim_Elements", num_Elements)) )
154 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements to netCDF file failed: " + *newFileName);
155 if (num_FaceElements>0)
156 if (! (ncdims[4] = dataFile.add_dim("dim_FaceElements", num_FaceElements)) )
157 throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements to netCDF file failed: " + *newFileName);
158 if (num_ContactElements>0)
159 if (! (ncdims[5] = dataFile.add_dim("dim_ContactElements", num_ContactElements)) )
160 throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements to netCDF file failed: " + *newFileName);
161 if (num_Points>0)
162 if (! (ncdims[6] = dataFile.add_dim("dim_Points", num_Points)) )
163 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Points to netCDF file failed: " + *newFileName);
164 if (num_Elements>0)
165 if (! (ncdims[7] = dataFile.add_dim("dim_Elements_Nodes", num_Elements_numNodes)) )
166 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements_Nodes to netCDF file failed: " + *newFileName);
167 if (num_FaceElements>0)
168 if (! (ncdims[8] = dataFile.add_dim("dim_FaceElements_numNodes", num_FaceElements_numNodes)) )
169 throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements_numNodes to netCDF file failed: " + *newFileName);
170 if (num_ContactElements>0)
171 if (! (ncdims[9] = dataFile.add_dim("dim_ContactElements_numNodes", num_ContactElements_numNodes)) )
172 throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements_numNodes to netCDF file failed: " + *newFileName);
173 if (num_Tags>0)
174 if (! (ncdims[10] = dataFile.add_dim("dim_Tags", num_Tags)) )
175 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Tags to netCDF file failed: " + *newFileName);
176
177 // Attributes: MPI size, MPI rank, Name, order, reduced_order
178 if (!dataFile.add_att("mpi_size", mpi_size) )
179 throw DataException("Error - MeshAdapter::dump: appending mpi_size to NetCDF file failed: " + *newFileName);
180 if (!dataFile.add_att("mpi_rank", mpi_rank) )
181 throw DataException("Error - MeshAdapter::dump: appending mpi_rank to NetCDF file failed: " + *newFileName);
182 if (!dataFile.add_att("Name",mesh->Name) )
183 throw DataException("Error - MeshAdapter::dump: appending Name to NetCDF file failed: " + *newFileName);
184 if (!dataFile.add_att("numDim",numDim) )
185 throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
186 if (!dataFile.add_att("order",mesh->order) )
187 throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
188 if (!dataFile.add_att("reduced_order",mesh->reduced_order) )
189 throw DataException("Error - MeshAdapter::dump: appending reduced_order to NetCDF file failed: " + *newFileName);
190 if (!dataFile.add_att("numNodes",numNodes) )
191 throw DataException("Error - MeshAdapter::dump: appending numNodes to NetCDF file failed: " + *newFileName);
192 if (!dataFile.add_att("num_Elements",num_Elements) )
193 throw DataException("Error - MeshAdapter::dump: appending num_Elements to NetCDF file failed: " + *newFileName);
194 if (!dataFile.add_att("num_FaceElements",num_FaceElements) )
195 throw DataException("Error - MeshAdapter::dump: appending num_FaceElements to NetCDF file failed: " + *newFileName);
196 if (!dataFile.add_att("num_ContactElements",num_ContactElements) )
197 throw DataException("Error - MeshAdapter::dump: appending num_ContactElements to NetCDF file failed: " + *newFileName);
198 if (!dataFile.add_att("num_Points",num_Points) )
199 throw DataException("Error - MeshAdapter::dump: appending num_Points to NetCDF file failed: " + *newFileName);
200 if (!dataFile.add_att("num_Elements_numNodes",num_Elements_numNodes) )
201 throw DataException("Error - MeshAdapter::dump: appending num_Elements_numNodes to NetCDF file failed: " + *newFileName);
202 if (!dataFile.add_att("num_FaceElements_numNodes",num_FaceElements_numNodes) )
203 throw DataException("Error - MeshAdapter::dump: appending num_FaceElements_numNodes to NetCDF file failed: " + *newFileName);
204 if (!dataFile.add_att("num_ContactElements_numNodes",num_ContactElements_numNodes) )
205 throw DataException("Error - MeshAdapter::dump: appending num_ContactElements_numNodes to NetCDF file failed: " + *newFileName);
206 if (!dataFile.add_att("Elements_TypeId", mesh->Elements->ReferenceElement->Type->TypeId) )
207 throw DataException("Error - MeshAdapter::dump: appending Elements_TypeId to NetCDF file failed: " + *newFileName);
208 if (!dataFile.add_att("FaceElements_TypeId", mesh->FaceElements->ReferenceElement->Type->TypeId) )
209 throw DataException("Error - MeshAdapter::dump: appending FaceElements_TypeId to NetCDF file failed: " + *newFileName);
210 if (!dataFile.add_att("ContactElements_TypeId", mesh->ContactElements->ReferenceElement->Type->TypeId) )
211 throw DataException("Error - MeshAdapter::dump: appending ContactElements_TypeId to NetCDF file failed: " + *newFileName);
212 if (!dataFile.add_att("Points_TypeId", mesh->Points->ReferenceElement->Type->TypeId) )
213 throw DataException("Error - MeshAdapter::dump: appending Points_TypeId to NetCDF file failed: " + *newFileName);
214 if (!dataFile.add_att("num_Tags", num_Tags) )
215 throw DataException("Error - MeshAdapter::dump: appending num_Tags to NetCDF file failed: " + *newFileName);
216
217 // // // // // Nodes // // // // //
218
219 // Only write nodes if non-empty because NetCDF doesn't like empty arrays (it treats them as NC_UNLIMITED)
220 if (numNodes>0) {
221
222 // Nodes Id
223 if (! ( ids = dataFile.add_var("Nodes_Id", ncInt, ncdims[0])) )
224 throw DataException("Error - MeshAdapter::dump: appending Nodes_Id to netCDF file failed: " + *newFileName);
225 int_ptr = &mesh->Nodes->Id[0];
226 if (! (ids->put(int_ptr, numNodes)) )
227 throw DataException("Error - MeshAdapter::dump: copy Nodes_Id to netCDF buffer failed: " + *newFileName);
228
229 // Nodes Tag
230 if (! ( ids = dataFile.add_var("Nodes_Tag", ncInt, ncdims[0])) )
231 throw DataException("Error - MeshAdapter::dump: appending Nodes_Tag to netCDF file failed: " + *newFileName);
232 int_ptr = &mesh->Nodes->Tag[0];
233 if (! (ids->put(int_ptr, numNodes)) )
234 throw DataException("Error - MeshAdapter::dump: copy Nodes_Tag to netCDF buffer failed: " + *newFileName);
235
236 // Nodes gDOF
237 if (! ( ids = dataFile.add_var("Nodes_gDOF", ncInt, ncdims[0])) )
238 throw DataException("Error - MeshAdapter::dump: appending Nodes_gDOF to netCDF file failed: " + *newFileName);
239 int_ptr = &mesh->Nodes->globalDegreesOfFreedom[0];
240 if (! (ids->put(int_ptr, numNodes)) )
241 throw DataException("Error - MeshAdapter::dump: copy Nodes_gDOF to netCDF buffer failed: " + *newFileName);
242
243 // Nodes global node index
244 if (! ( ids = dataFile.add_var("Nodes_gNI", ncInt, ncdims[0])) )
245 throw DataException("Error - MeshAdapter::dump: appending Nodes_gNI to netCDF file failed: " + *newFileName);
246 int_ptr = &mesh->Nodes->globalNodesIndex[0];
247 if (! (ids->put(int_ptr, numNodes)) )
248 throw DataException("Error - MeshAdapter::dump: copy Nodes_gNI to netCDF buffer failed: " + *newFileName);
249
250 // Nodes grDof
251 if (! ( ids = dataFile.add_var("Nodes_grDfI", ncInt, ncdims[0])) )
252 throw DataException("Error - MeshAdapter::dump: appending Nodes_grDfI to netCDF file failed: " + *newFileName);
253 int_ptr = &mesh->Nodes->globalReducedDOFIndex[0];
254 if (! (ids->put(int_ptr, numNodes)) )
255 throw DataException("Error - MeshAdapter::dump: copy Nodes_grDfI to netCDF buffer failed: " + *newFileName);
256
257 // Nodes grNI
258 if (! ( ids = dataFile.add_var("Nodes_grNI", ncInt, ncdims[0])) )
259 throw DataException("Error - MeshAdapter::dump: appending Nodes_grNI to netCDF file failed: " + *newFileName);
260 int_ptr = &mesh->Nodes->globalReducedNodesIndex[0];
261 if (! (ids->put(int_ptr, numNodes)) )
262 throw DataException("Error - MeshAdapter::dump: copy Nodes_grNI to netCDF buffer failed: " + *newFileName);
263
264 // Nodes Coordinates
265 if (! ( ids = dataFile.add_var("Nodes_Coordinates", ncDouble, ncdims[0], ncdims[1]) ) )
266 throw DataException("Error - MeshAdapter::dump: appending Nodes_Coordinates to netCDF file failed: " + *newFileName);
267 if (! (ids->put(&(mesh->Nodes->Coordinates[INDEX2(0,0,numDim)]), numNodes, numDim)) )
268 throw DataException("Error - MeshAdapter::dump: copy Nodes_Coordinates to netCDF buffer failed: " + *newFileName);
269
270 // Nodes degreesOfFreedomDistribution
271 if (! ( ids = dataFile.add_var("Nodes_DofDistribution", ncInt, ncdims[2])) )
272 throw DataException("Error - MeshAdapter::dump: appending Nodes_DofDistribution to netCDF file failed: " + *newFileName);
273 int_ptr = &mesh->Nodes->degreesOfFreedomDistribution->first_component[0];
274 if (! (ids->put(int_ptr, mpi_size+1)) )
275 throw DataException("Error - MeshAdapter::dump: copy Nodes_DofDistribution to netCDF buffer failed: " + *newFileName);
276
277 }
278
279 // // // // // Elements // // // // //
280
281 if (num_Elements>0) {
282
283 // Temp storage to gather node IDs
284 int *Elements_Nodes = TMPMEMALLOC(num_Elements*num_Elements_numNodes,int);
285
286 // Elements_Id
287 if (! ( ids = dataFile.add_var("Elements_Id", ncInt, ncdims[3])) )
288 throw DataException("Error - MeshAdapter::dump: appending Elements_Id to netCDF file failed: " + *newFileName);
289 int_ptr = &mesh->Elements->Id[0];
290 if (! (ids->put(int_ptr, num_Elements)) )
291 throw DataException("Error - MeshAdapter::dump: copy Elements_Id to netCDF buffer failed: " + *newFileName);
292
293 // Elements_Tag
294 if (! ( ids = dataFile.add_var("Elements_Tag", ncInt, ncdims[3])) )
295 throw DataException("Error - MeshAdapter::dump: appending Elements_Tag to netCDF file failed: " + *newFileName);
296 int_ptr = &mesh->Elements->Tag[0];
297 if (! (ids->put(int_ptr, num_Elements)) )
298 throw DataException("Error - MeshAdapter::dump: copy Elements_Tag to netCDF buffer failed: " + *newFileName);
299
300 // Elements_Owner
301 if (! ( ids = dataFile.add_var("Elements_Owner", ncInt, ncdims[3])) )
302 throw DataException("Error - MeshAdapter::dump: appending Elements_Owner to netCDF file failed: " + *newFileName);
303 int_ptr = &mesh->Elements->Owner[0];
304 if (! (ids->put(int_ptr, num_Elements)) )
305 throw DataException("Error - MeshAdapter::dump: copy Elements_Owner to netCDF buffer failed: " + *newFileName);
306
307 // Elements_Color
308 if (! ( ids = dataFile.add_var("Elements_Color", ncInt, ncdims[3])) )
309 throw DataException("Error - MeshAdapter::dump: appending Elements_Color to netCDF file failed: " + *newFileName);
310 int_ptr = &mesh->Elements->Color[0];
311 if (! (ids->put(int_ptr, num_Elements)) )
312 throw DataException("Error - MeshAdapter::dump: copy Elements_Color to netCDF buffer failed: " + *newFileName);
313
314 // Elements_Nodes
315 for (int i=0; i<num_Elements; i++)
316 for (int j=0; j<num_Elements_numNodes; j++)
317 Elements_Nodes[INDEX2(j,i,num_Elements_numNodes)] = mesh->Nodes->Id[mesh->Elements->Nodes[INDEX2(j,i,num_Elements_numNodes)]];
318 if (! ( ids = dataFile.add_var("Elements_Nodes", ncInt, ncdims[3], ncdims[7]) ) )
319 throw DataException("Error - MeshAdapter::dump: appending Elements_Nodes to netCDF file failed: " + *newFileName);
320 if (! (ids->put(&(Elements_Nodes[0]), num_Elements, num_Elements_numNodes)) )
321 throw DataException("Error - MeshAdapter::dump: copy Elements_Nodes to netCDF buffer failed: " + *newFileName);
322
323 TMPMEMFREE(Elements_Nodes);
324
325 }
326
327 // // // // // Face_Elements // // // // //
328
329 if (num_FaceElements>0) {
330
331 // Temp storage to gather node IDs
332 int *FaceElements_Nodes = TMPMEMALLOC(num_FaceElements*num_FaceElements_numNodes,int);
333
334 // FaceElements_Id
335 if (! ( ids = dataFile.add_var("FaceElements_Id", ncInt, ncdims[4])) )
336 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Id to netCDF file failed: " + *newFileName);
337 int_ptr = &mesh->FaceElements->Id[0];
338 if (! (ids->put(int_ptr, num_FaceElements)) )
339 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Id to netCDF buffer failed: " + *newFileName);
340
341 // FaceElements_Tag
342 if (! ( ids = dataFile.add_var("FaceElements_Tag", ncInt, ncdims[4])) )
343 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Tag to netCDF file failed: " + *newFileName);
344 int_ptr = &mesh->FaceElements->Tag[0];
345 if (! (ids->put(int_ptr, num_FaceElements)) )
346 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Tag to netCDF buffer failed: " + *newFileName);
347
348 // FaceElements_Owner
349 if (! ( ids = dataFile.add_var("FaceElements_Owner", ncInt, ncdims[4])) )
350 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Owner to netCDF file failed: " + *newFileName);
351 int_ptr = &mesh->FaceElements->Owner[0];
352 if (! (ids->put(int_ptr, num_FaceElements)) )
353 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Owner to netCDF buffer failed: " + *newFileName);
354
355 // FaceElements_Color
356 if (! ( ids = dataFile.add_var("FaceElements_Color", ncInt, ncdims[4])) )
357 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Color to netCDF file failed: " + *newFileName);
358 int_ptr = &mesh->FaceElements->Color[0];
359 if (! (ids->put(int_ptr, num_FaceElements)) )
360 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Color to netCDF buffer failed: " + *newFileName);
361
362 // FaceElements_Nodes
363 for (int i=0; i<num_FaceElements; i++)
364 for (int j=0; j<num_FaceElements_numNodes; j++)
365 FaceElements_Nodes[INDEX2(j,i,num_FaceElements_numNodes)] = mesh->Nodes->Id[mesh->FaceElements->Nodes[INDEX2(j,i,num_FaceElements_numNodes)]];
366 if (! ( ids = dataFile.add_var("FaceElements_Nodes", ncInt, ncdims[4], ncdims[8]) ) )
367 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Nodes to netCDF file failed: " + *newFileName);
368 if (! (ids->put(&(FaceElements_Nodes[0]), num_FaceElements, num_FaceElements_numNodes)) )
369 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Nodes to netCDF buffer failed: " + *newFileName);
370
371 TMPMEMFREE(FaceElements_Nodes);
372
373 }
374
375 // // // // // Contact_Elements // // // // //
376
377 if (num_ContactElements>0) {
378
379 // Temp storage to gather node IDs
380 int *ContactElements_Nodes = TMPMEMALLOC(num_ContactElements*num_ContactElements_numNodes,int);
381
382 // ContactElements_Id
383 if (! ( ids = dataFile.add_var("ContactElements_Id", ncInt, ncdims[5])) )
384 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Id to netCDF file failed: " + *newFileName);
385 int_ptr = &mesh->ContactElements->Id[0];
386 if (! (ids->put(int_ptr, num_ContactElements)) )
387 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Id to netCDF buffer failed: " + *newFileName);
388
389 // ContactElements_Tag
390 if (! ( ids = dataFile.add_var("ContactElements_Tag", ncInt, ncdims[5])) )
391 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Tag to netCDF file failed: " + *newFileName);
392 int_ptr = &mesh->ContactElements->Tag[0];
393 if (! (ids->put(int_ptr, num_ContactElements)) )
394 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Tag to netCDF buffer failed: " + *newFileName);
395
396 // ContactElements_Owner
397 if (! ( ids = dataFile.add_var("ContactElements_Owner", ncInt, ncdims[5])) )
398 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Owner to netCDF file failed: " + *newFileName);
399 int_ptr = &mesh->ContactElements->Owner[0];
400 if (! (ids->put(int_ptr, num_ContactElements)) )
401 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Owner to netCDF buffer failed: " + *newFileName);
402
403 // ContactElements_Color
404 if (! ( ids = dataFile.add_var("ContactElements_Color", ncInt, ncdims[5])) )
405 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Color to netCDF file failed: " + *newFileName);
406 int_ptr = &mesh->ContactElements->Color[0];
407 if (! (ids->put(int_ptr, num_ContactElements)) )
408 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Color to netCDF buffer failed: " + *newFileName);
409
410 // ContactElements_Nodes
411 for (int i=0; i<num_ContactElements; i++)
412 for (int j=0; j<num_ContactElements_numNodes; j++)
413 ContactElements_Nodes[INDEX2(j,i,num_ContactElements_numNodes)] = mesh->Nodes->Id[mesh->ContactElements->Nodes[INDEX2(j,i,num_ContactElements_numNodes)]];
414 if (! ( ids = dataFile.add_var("ContactElements_Nodes", ncInt, ncdims[5], ncdims[9]) ) )
415 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Nodes to netCDF file failed: " + *newFileName);
416 if (! (ids->put(&(ContactElements_Nodes[0]), num_ContactElements, num_ContactElements_numNodes)) )
417 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Nodes to netCDF buffer failed: " + *newFileName);
418
419 TMPMEMFREE(ContactElements_Nodes);
420
421 }
422
423 // // // // // Points // // // // //
424
425 if (num_Points>0) {
426
427 fprintf(stderr, "\n\n\nWARNING: MeshAdapter::dump has not been tested with Point elements\n\n\n");
428
429 // Temp storage to gather node IDs
430 int *Points_Nodes = TMPMEMALLOC(num_Points,int);
431
432 // Points_Id
433 if (! ( ids = dataFile.add_var("Points_Id", ncInt, ncdims[6])) )
434 throw DataException("Error - MeshAdapter::dump: appending Points_Id to netCDF file failed: " + *newFileName);
435 int_ptr = &mesh->Points->Id[0];
436 if (! (ids->put(int_ptr, num_Points)) )
437 throw DataException("Error - MeshAdapter::dump: copy Points_Id to netCDF buffer failed: " + *newFileName);
438
439 // Points_Tag
440 if (! ( ids = dataFile.add_var("Points_Tag", ncInt, ncdims[6])) )
441 throw DataException("Error - MeshAdapter::dump: appending Points_Tag to netCDF file failed: " + *newFileName);
442 int_ptr = &mesh->Points->Tag[0];
443 if (! (ids->put(int_ptr, num_Points)) )
444 throw DataException("Error - MeshAdapter::dump: copy Points_Tag to netCDF buffer failed: " + *newFileName);
445
446 // Points_Owner
447 if (! ( ids = dataFile.add_var("Points_Owner", ncInt, ncdims[6])) )
448 throw DataException("Error - MeshAdapter::dump: appending Points_Owner to netCDF file failed: " + *newFileName);
449 int_ptr = &mesh->Points->Owner[0];
450 if (! (ids->put(int_ptr, num_Points)) )
451 throw DataException("Error - MeshAdapter::dump: copy Points_Owner to netCDF buffer failed: " + *newFileName);
452
453 // Points_Color
454 if (! ( ids = dataFile.add_var("Points_Color", ncInt, ncdims[6])) )
455 throw DataException("Error - MeshAdapter::dump: appending Points_Color to netCDF file failed: " + *newFileName);
456 int_ptr = &mesh->Points->Color[0];
457 if (! (ids->put(int_ptr, num_Points)) )
458 throw DataException("Error - MeshAdapter::dump: copy Points_Color to netCDF buffer failed: " + *newFileName);
459
460 // Points_Nodes
461 // mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]]
462 for (int i=0; i<num_Points; i++)
463 Points_Nodes[i] = mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]];
464 if (! ( ids = dataFile.add_var("Points_Nodes", ncInt, ncdims[6]) ) )
465 throw DataException("Error - MeshAdapter::dump: appending Points_Nodes to netCDF file failed: " + *newFileName);
466 if (! (ids->put(&(Points_Nodes[0]), num_Points)) )
467 throw DataException("Error - MeshAdapter::dump: copy Points_Nodes to netCDF buffer failed: " + *newFileName);
468
469 TMPMEMFREE(Points_Nodes);
470
471 }
472
473 // // // // // TagMap // // // // //
474
475 if (num_Tags>0) {
476
477 // Temp storage to gather node IDs
478 int *Tags_keys = TMPMEMALLOC(num_Tags, int);
479 char name_temp[4096];
480
481 /* Copy tag data into temp arrays */
482 tag_map = mesh->TagMap;
483 if (tag_map) {
484 int i = 0;
485 while (tag_map) {
486 Tags_keys[i++] = tag_map->tag_key;
487 tag_map=tag_map->next;
488 }
489 }
490
491 // Tags_keys
492 if (! ( ids = dataFile.add_var("Tags_keys", ncInt, ncdims[10])) )
493 throw DataException("Error - MeshAdapter::dump: appending Tags_keys to netCDF file failed: " + *newFileName);
494 int_ptr = &Tags_keys[0];
495 if (! (ids->put(int_ptr, num_Tags)) )
496 throw DataException("Error - MeshAdapter::dump: copy Tags_keys to netCDF buffer failed: " + *newFileName);
497
498 // Tags_names_*
499 // This is an array of strings, it should be stored as an array but instead I have hacked in one attribute per string
500 // because the NetCDF manual doesn't tell how to do an array of strings
501 tag_map = mesh->TagMap;
502 if (tag_map) {
503 int i = 0;
504 while (tag_map) {
505 sprintf(name_temp, "Tags_name_%d", i);
506 if (!dataFile.add_att(name_temp, tag_map->name) )
507 throw DataException("Error - MeshAdapter::dump: appending Tags_names_ to NetCDF file failed: " + *newFileName);
508 tag_map=tag_map->next;
509 i++;
510 }
511 }
512
513 TMPMEMFREE(Tags_keys);
514
515 }
516
517
518 // NetCDF file is closed by destructor of NcFile object
519 #else
520 Finley_setError(IO_ERROR, "MeshAdapter::dump: not configured with NetCDF. Please contact your installation manager.");
521 #endif /* USE_NETCDF */
522 checkFinleyError();
523 }
524
525 string MeshAdapter::getDescription() const
526 {
527 return "FinleyMesh";
528 }
529
530 string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const
531 {
532 FunctionSpaceNamesMapType::iterator loc;
533 loc=m_functionSpaceTypeNames.find(functionSpaceType);
534 if (loc==m_functionSpaceTypeNames.end()) {
535 return "Invalid function space type code.";
536 } else {
537 return loc->second;
538 }
539 }
540
541 bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const
542 {
543 FunctionSpaceNamesMapType::iterator loc;
544 loc=m_functionSpaceTypeNames.find(functionSpaceType);
545 return (loc!=m_functionSpaceTypeNames.end());
546 }
547
548 void MeshAdapter::setFunctionSpaceTypeNames()
549 {
550 m_functionSpaceTypeNames.insert
551 (FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom"));
552 m_functionSpaceTypeNames.insert
553 (FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom"));
554 m_functionSpaceTypeNames.insert
555 (FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes"));
556 m_functionSpaceTypeNames.insert
557 (FunctionSpaceNamesMapType::value_type(ReducedNodes,"Finley_Reduced_Nodes"));
558 m_functionSpaceTypeNames.insert
559 (FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements"));
560 m_functionSpaceTypeNames.insert
561 (FunctionSpaceNamesMapType::value_type(ReducedElements,"Finley_Reduced_Elements"));
562 m_functionSpaceTypeNames.insert
563 (FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements"));
564 m_functionSpaceTypeNames.insert
565 (FunctionSpaceNamesMapType::value_type(ReducedFaceElements,"Finley_Reduced_Face_Elements"));
566 m_functionSpaceTypeNames.insert
567 (FunctionSpaceNamesMapType::value_type(Points,"Finley_Points"));
568 m_functionSpaceTypeNames.insert
569 (FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0"));
570 m_functionSpaceTypeNames.insert
571 (FunctionSpaceNamesMapType::value_type(ReducedContactElementsZero,"Finley_Reduced_Contact_Elements_0"));
572 m_functionSpaceTypeNames.insert
573 (FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1"));
574 m_functionSpaceTypeNames.insert
575 (FunctionSpaceNamesMapType::value_type(ReducedContactElementsOne,"Finley_Reduced_Contact_Elements_1"));
576 }
577
578 int MeshAdapter::getContinuousFunctionCode() const
579 {
580 return Nodes;
581 }
582 int MeshAdapter::getReducedContinuousFunctionCode() const
583 {
584 return ReducedNodes;
585 }
586
587 int MeshAdapter::getFunctionCode() const
588 {
589 return Elements;
590 }
591 int MeshAdapter::getReducedFunctionCode() const
592 {
593 return ReducedElements;
594 }
595
596 int MeshAdapter::getFunctionOnBoundaryCode() const
597 {
598 return FaceElements;
599 }
600 int MeshAdapter::getReducedFunctionOnBoundaryCode() const
601 {
602 return ReducedFaceElements;
603 }
604
605 int MeshAdapter::getFunctionOnContactZeroCode() const
606 {
607 return ContactElementsZero;
608 }
609 int MeshAdapter::getReducedFunctionOnContactZeroCode() const
610 {
611 return ReducedContactElementsZero;
612 }
613
614 int MeshAdapter::getFunctionOnContactOneCode() const
615 {
616 return ContactElementsOne;
617 }
618 int MeshAdapter::getReducedFunctionOnContactOneCode() const
619 {
620 return ReducedContactElementsOne;
621 }
622
623 int MeshAdapter::getSolutionCode() const
624 {
625 return DegreesOfFreedom;
626 }
627
628 int MeshAdapter::getReducedSolutionCode() const
629 {
630 return ReducedDegreesOfFreedom;
631 }
632
633 int MeshAdapter::getDiracDeltaFunctionCode() const
634 {
635 return Points;
636 }
637
638 //
639 // return the spatial dimension of the Mesh:
640 //
641 int MeshAdapter::getDim() const
642 {
643 int numDim=Finley_Mesh_getDim(m_finleyMesh.get());
644 checkFinleyError();
645 return numDim;
646 }
647
648 //
649 // return the number of data points per sample and the number of samples
650 // needed to represent data on a parts of the mesh.
651 //
652 pair<int,int> MeshAdapter::getDataShape(int functionSpaceCode) const
653 {
654 int numDataPointsPerSample=0;
655 int numSamples=0;
656 Finley_Mesh* mesh=m_finleyMesh.get();
657 switch (functionSpaceCode) {
658 case(Nodes):
659 numDataPointsPerSample=1;
660 numSamples=Finley_NodeFile_getNumNodes(mesh->Nodes);
661 break;
662 case(ReducedNodes):
663 numDataPointsPerSample=1;
664 numSamples=Finley_NodeFile_getNumReducedNodes(mesh->Nodes);
665 break;
666 case(Elements):
667 if (mesh->Elements!=NULL) {
668 numSamples=mesh->Elements->numElements;
669 numDataPointsPerSample=mesh->Elements->ReferenceElement->numQuadNodes;
670 }
671 break;
672 case(ReducedElements):
673 if (mesh->Elements!=NULL) {
674 numSamples=mesh->Elements->numElements;
675 numDataPointsPerSample=mesh->Elements->ReferenceElementReducedOrder->numQuadNodes;
676 }
677 break;
678 case(FaceElements):
679 if (mesh->FaceElements!=NULL) {
680 numDataPointsPerSample=mesh->FaceElements->ReferenceElement->numQuadNodes;
681 numSamples=mesh->FaceElements->numElements;
682 }
683 break;
684 case(ReducedFaceElements):
685 if (mesh->FaceElements!=NULL) {
686 numDataPointsPerSample=mesh->FaceElements->ReferenceElementReducedOrder->numQuadNodes;
687 numSamples=mesh->FaceElements->numElements;
688 }
689 break;
690 case(Points):
691 if (mesh->Points!=NULL) {
692 numDataPointsPerSample=1;
693 numSamples=mesh->Points->numElements;
694 }
695 break;
696 case(ContactElementsZero):
697 if (mesh->ContactElements!=NULL) {
698 numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;
699 numSamples=mesh->ContactElements->numElements;
700 }
701 break;
702 case(ReducedContactElementsZero):
703 if (mesh->ContactElements!=NULL) {
704 numDataPointsPerSample=mesh->ContactElements->ReferenceElementReducedOrder->numQuadNodes;
705 numSamples=mesh->ContactElements->numElements;
706 }
707 break;
708 case(ContactElementsOne):
709 if (mesh->ContactElements!=NULL) {
710 numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;
711 numSamples=mesh->ContactElements->numElements;
712 }
713 break;
714 case(ReducedContactElementsOne):
715 if (mesh->ContactElements!=NULL) {
716 numDataPointsPerSample=mesh->ContactElements->ReferenceElementReducedOrder->numQuadNodes;
717 numSamples=mesh->ContactElements->numElements;
718 }
719 break;
720 case(DegreesOfFreedom):
721 if (mesh->Nodes!=NULL) {
722 numDataPointsPerSample=1;
723 numSamples=Finley_NodeFile_getNumDegreesOfFreedom(mesh->Nodes);
724 }
725 break;
726 case(ReducedDegreesOfFreedom):
727 if (mesh->Nodes!=NULL) {
728 numDataPointsPerSample=1;
729 numSamples=Finley_NodeFile_getNumReducedDegreesOfFreedom(mesh->Nodes);
730 }
731 break;
732 default:
733 stringstream temp;
734 temp << "Error - Invalid function space type: " << functionSpaceCode << " for domain: " << getDescription();
735 throw FinleyAdapterException(temp.str());
736 break;
737 }
738 return pair<int,int>(numDataPointsPerSample,numSamples);
739 }
740
741 //
742 // adds linear PDE of second order into a given stiffness matrix and right hand side:
743 //
744 void MeshAdapter::addPDEToSystem(
745 SystemMatrixAdapter& mat, escript::Data& rhs,
746 const escript::Data& A, const escript::Data& B, const escript::Data& C,const escript::Data& D,const escript::Data& X,const escript::Data& Y,
747 const escript::Data& d, const escript::Data& y,
748 const escript::Data& d_contact,const escript::Data& y_contact) const
749 {
750 escriptDataC _rhs=rhs.getDataC();
751 escriptDataC _A =A.getDataC();
752 escriptDataC _B=B.getDataC();
753 escriptDataC _C=C.getDataC();
754 escriptDataC _D=D.getDataC();
755 escriptDataC _X=X.getDataC();
756 escriptDataC _Y=Y.getDataC();
757 escriptDataC _d=d.getDataC();
758 escriptDataC _y=y.getDataC();
759 escriptDataC _d_contact=d_contact.getDataC();
760 escriptDataC _y_contact=y_contact.getDataC();
761
762 Finley_Mesh* mesh=m_finleyMesh.get();
763
764 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,mat.getPaso_SystemMatrix(), &_rhs, &_A, &_B, &_C, &_D, &_X, &_Y );
765 checkFinleyError();
766
767 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, mat.getPaso_SystemMatrix(), &_rhs, 0, 0, 0, &_d, 0, &_y );
768 checkFinleyError();
769
770 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, mat.getPaso_SystemMatrix(), &_rhs , 0, 0, 0, &_d_contact, 0, &_y_contact );
771 checkFinleyError();
772 }
773
774 void MeshAdapter::addPDEToLumpedSystem(
775 escript::Data& mat,
776 const escript::Data& D,
777 const escript::Data& d) const
778 {
779 escriptDataC _mat=mat.getDataC();
780 escriptDataC _D=D.getDataC();
781 escriptDataC _d=d.getDataC();
782
783 Finley_Mesh* mesh=m_finleyMesh.get();
784
785 Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->Elements,&_mat, &_D);
786 Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->FaceElements,&_mat, &_d);
787
788 checkFinleyError();
789 }
790
791
792 //
793 // adds linear PDE of second order into the right hand side only
794 //
795 void MeshAdapter::addPDEToRHS( escript::Data& rhs, const escript::Data& X,const escript::Data& Y, const escript::Data& y, const escript::Data& y_contact) const
796 {
797 Finley_Mesh* mesh=m_finleyMesh.get();
798
799 escriptDataC _rhs=rhs.getDataC();
800 escriptDataC _X=X.getDataC();
801 escriptDataC _Y=Y.getDataC();
802 escriptDataC _y=y.getDataC();
803 escriptDataC _y_contact=y_contact.getDataC();
804
805 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements, 0, &_rhs, 0, 0, 0, 0, &_X, &_Y );
806 checkFinleyError();
807
808 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, 0, &_rhs, 0, 0, 0, 0, 0, &_y );
809 checkFinleyError();
810
811 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, 0, &_rhs , 0, 0, 0, 0, 0, &_y_contact );
812 checkFinleyError();
813 }
814 //
815 // adds PDE of second order into a transport problem
816 //
817 void MeshAdapter::addPDEToTransportProblem(
818 TransportProblemAdapter& tp, escript::Data& source, const escript::Data& M,
819 const escript::Data& A, const escript::Data& B, const escript::Data& C,
820 const escript::Data& D,const escript::Data& X,const escript::Data& Y,
821 const escript::Data& d, const escript::Data& y,
822 const escript::Data& d_contact,const escript::Data& y_contact) const
823 {
824 DataArrayView::ShapeType shape;
825 source.expand();
826 escriptDataC _source=source.getDataC();
827 escriptDataC _M=M.getDataC();
828 escriptDataC _A=A.getDataC();
829 escriptDataC _B=B.getDataC();
830 escriptDataC _C=C.getDataC();
831 escriptDataC _D=D.getDataC();
832 escriptDataC _X=X.getDataC();
833 escriptDataC _Y=Y.getDataC();
834 escriptDataC _d=d.getDataC();
835 escriptDataC _y=y.getDataC();
836 escriptDataC _d_contact=d_contact.getDataC();
837 escriptDataC _y_contact=y_contact.getDataC();
838
839 Finley_Mesh* mesh=m_finleyMesh.get();
840 Paso_FCTransportProblem* _tp = tp.getPaso_FCTransportProblem();
841
842 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->mass_matrix, &_source, 0, 0, 0, &_M, 0, 0 );
843 checkFinleyError();
844
845 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->transport_matrix, &_source, &_A, &_B, &_C, &_D, &_X, &_Y );
846 checkFinleyError();
847
848 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, _tp->transport_matrix, &_source, 0, 0, 0, &_d, 0, &_y );
849 checkFinleyError();
850
851 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, _tp->transport_matrix, &_source , 0, 0, 0, &_d_contact, 0, &_y_contact );
852 checkFinleyError();
853 }
854
855 //
856 // interpolates data between different function spaces:
857 //
858 void MeshAdapter::interpolateOnDomain(escript::Data& target,const escript::Data& in) const
859 {
860 const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(in.getFunctionSpace().getDomain());
861 const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());
862 if (inDomain!=*this)
863 throw FinleyAdapterException("Error - Illegal domain of interpolant.");
864 if (targetDomain!=*this)
865 throw FinleyAdapterException("Error - Illegal domain of interpolation target.");
866
867 Finley_Mesh* mesh=m_finleyMesh.get();
868 escriptDataC _target=target.getDataC();
869 escriptDataC _in=in.getDataC();
870 switch(in.getFunctionSpace().getTypeCode()) {
871 case(Nodes):
872 switch(target.getFunctionSpace().getTypeCode()) {
873 case(Nodes):
874 case(ReducedNodes):
875 case(DegreesOfFreedom):
876 case(ReducedDegreesOfFreedom):
877 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
878 break;
879 case(Elements):
880 case(ReducedElements):
881 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
882 break;
883 case(FaceElements):
884 case(ReducedFaceElements):
885 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
886 break;
887 case(Points):
888 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
889 break;
890 case(ContactElementsZero):
891 case(ReducedContactElementsZero):
892 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
893 break;
894 case(ContactElementsOne):
895 case(ReducedContactElementsOne):
896 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
897 break;
898 default:
899 stringstream temp;
900 temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
901 throw FinleyAdapterException(temp.str());
902 break;
903 }
904 break;
905 case(ReducedNodes):
906 switch(target.getFunctionSpace().getTypeCode()) {
907 case(Nodes):
908 case(ReducedNodes):
909 case(DegreesOfFreedom):
910 case(ReducedDegreesOfFreedom):
911 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
912 break;
913 case(Elements):
914 case(ReducedElements):
915 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
916 break;
917 case(FaceElements):
918 case(ReducedFaceElements):
919 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
920 break;
921 case(Points):
922 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
923 break;
924 case(ContactElementsZero):
925 case(ReducedContactElementsZero):
926 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
927 break;
928 case(ContactElementsOne):
929 case(ReducedContactElementsOne):
930 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
931 break;
932 default:
933 stringstream temp;
934 temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
935 throw FinleyAdapterException(temp.str());
936 break;
937 }
938 break;
939 case(Elements):
940 if (target.getFunctionSpace().getTypeCode()==Elements) {
941 Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
942 } else if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
943 Finley_Assemble_AverageElementData(mesh->Elements,&_target,&_in);
944 } else {
945 throw FinleyAdapterException("Error - No interpolation with data on elements possible.");
946 }
947 break;
948 case(ReducedElements):
949 if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
950 Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
951 } else {
952 throw FinleyAdapterException("Error - No interpolation with data on elements with reduced integration order possible.");
953 }
954 break;
955 case(FaceElements):
956 if (target.getFunctionSpace().getTypeCode()==FaceElements) {
957 Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
958 } else if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
959 Finley_Assemble_AverageElementData(mesh->FaceElements,&_target,&_in);
960 } else {
961 throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");
962 }
963 break;
964 case(ReducedFaceElements):
965 if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
966 Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
967 } else {
968 throw FinleyAdapterException("Error - No interpolation with data on face elements with reduced integration order possible.");
969 }
970 break;
971 case(Points):
972 if (target.getFunctionSpace().getTypeCode()==Points) {
973 Finley_Assemble_CopyElementData(mesh->Points,&_target,&_in);
974 } else {
975 throw FinleyAdapterException("Error - No interpolation with data on points possible.");
976 }
977 break;
978 case(ContactElementsZero):
979 case(ContactElementsOne):
980 if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {
981 Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
982 } else if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
983 Finley_Assemble_AverageElementData(mesh->ContactElements,&_target,&_in);
984 } else {
985 throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");
986 }
987 break;
988 case(ReducedContactElementsZero):
989 case(ReducedContactElementsOne):
990 if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
991 Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
992 } else {
993 throw FinleyAdapterException("Error - No interpolation with data on contact elements with reduced integration order possible.");
994 }
995 break;
996 case(DegreesOfFreedom):
997 switch(target.getFunctionSpace().getTypeCode()) {
998 case(ReducedDegreesOfFreedom):
999 case(DegreesOfFreedom):
1000 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1001 break;
1002
1003 case(Nodes):
1004 case(ReducedNodes):
1005 if (getMPISize()>1) {
1006 escript::Data temp=escript::Data(in);
1007 temp.expand();
1008 escriptDataC _in2 = temp.getDataC();
1009 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1010 } else {
1011 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1012 }
1013 break;
1014 case(Elements):
1015 case(ReducedElements):
1016 if (getMPISize()>1) {
1017 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1018 escriptDataC _in2 = temp.getDataC();
1019 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1020 } else {
1021 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1022 }
1023 break;
1024 case(FaceElements):
1025 case(ReducedFaceElements):
1026 if (getMPISize()>1) {
1027 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1028 escriptDataC _in2 = temp.getDataC();
1029 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1030
1031 } else {
1032 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1033 }
1034 break;
1035 case(Points):
1036 if (getMPISize()>1) {
1037 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1038 escriptDataC _in2 = temp.getDataC();
1039 } else {
1040 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1041 }
1042 break;
1043 case(ContactElementsZero):
1044 case(ContactElementsOne):
1045 case(ReducedContactElementsZero):
1046 case(ReducedContactElementsOne):
1047 if (getMPISize()>1) {
1048 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1049 escriptDataC _in2 = temp.getDataC();
1050 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1051 } else {
1052 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1053 }
1054 break;
1055 default:
1056 stringstream temp;
1057 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1058 throw FinleyAdapterException(temp.str());
1059 break;
1060 }
1061 break;
1062 case(ReducedDegreesOfFreedom):
1063 switch(target.getFunctionSpace().getTypeCode()) {
1064 case(Nodes):
1065 throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");
1066 break;
1067 case(ReducedNodes):
1068 if (getMPISize()>1) {
1069 escript::Data temp=escript::Data(in);
1070 temp.expand();
1071 escriptDataC _in2 = temp.getDataC();
1072 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1073 } else {
1074 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1075 }
1076 break;
1077 case(DegreesOfFreedom):
1078 throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");
1079 break;
1080 case(ReducedDegreesOfFreedom):
1081 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1082 break;
1083 case(Elements):
1084 case(ReducedElements):
1085 if (getMPISize()>1) {
1086 escript::Data temp=escript::Data( in, reducedContinuousFunction(asAbstractContinuousDomain()) );
1087 escriptDataC _in2 = temp.getDataC();
1088 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1089 } else {
1090 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1091 }
1092 break;
1093 case(FaceElements):
1094 case(ReducedFaceElements):
1095 if (getMPISize()>1) {
1096 escript::Data temp=escript::Data( in, reducedContinuousFunction(asAbstractContinuousDomain()) );
1097 escriptDataC _in2 = temp.getDataC();
1098 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1099 } else {
1100 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1101 }
1102 break;
1103 case(Points):
1104 if (getMPISize()>1) {
1105 escript::Data temp=escript::Data( in, reducedContinuousFunction(asAbstractContinuousDomain()) );
1106 escriptDataC _in2 = temp.getDataC();
1107 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in2,&_target);
1108 } else {
1109 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1110 }
1111 break;
1112 case(ContactElementsZero):
1113 case(ContactElementsOne):
1114 case(ReducedContactElementsZero):
1115 case(ReducedContactElementsOne):
1116 if (getMPISize()>1) {
1117 escript::Data temp=escript::Data( in, reducedContinuousFunction(asAbstractContinuousDomain()) );
1118 escriptDataC _in2 = temp.getDataC();
1119 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1120 } else {
1121 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1122 }
1123 break;
1124 default:
1125 stringstream temp;
1126 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1127 throw FinleyAdapterException(temp.str());
1128 break;
1129 }
1130 break;
1131 default:
1132 stringstream temp;
1133 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();
1134 throw FinleyAdapterException(temp.str());
1135 break;
1136 }
1137 checkFinleyError();
1138 }
1139
1140 //
1141 // copies the locations of sample points into x:
1142 //
1143 void MeshAdapter::setToX(escript::Data& arg) const
1144 {
1145 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1146 if (argDomain!=*this)
1147 throw FinleyAdapterException("Error - Illegal domain of data point locations");
1148 Finley_Mesh* mesh=m_finleyMesh.get();
1149 // in case of values node coordinates we can do the job directly:
1150 if (arg.getFunctionSpace().getTypeCode()==Nodes) {
1151 escriptDataC _arg=arg.getDataC();
1152 Finley_Assemble_NodeCoordinates(mesh->Nodes,&_arg);
1153 } else {
1154 escript::Data tmp_data=Vector(0.0,continuousFunction(asAbstractContinuousDomain()),true);
1155 escriptDataC _tmp_data=tmp_data.getDataC();
1156 Finley_Assemble_NodeCoordinates(mesh->Nodes,&_tmp_data);
1157 // this is then interpolated onto arg:
1158 interpolateOnDomain(arg,tmp_data);
1159 }
1160 checkFinleyError();
1161 }
1162
1163 //
1164 // return the normal vectors at the location of data points as a Data object:
1165 //
1166 void MeshAdapter::setToNormal(escript::Data& normal) const
1167 {
1168 const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain());
1169 if (normalDomain!=*this)
1170 throw FinleyAdapterException("Error - Illegal domain of normal locations");
1171 Finley_Mesh* mesh=m_finleyMesh.get();
1172 escriptDataC _normal=normal.getDataC();
1173 switch(normal.getFunctionSpace().getTypeCode()) {
1174 case(Nodes):
1175 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for nodes");
1176 break;
1177 case(ReducedNodes):
1178 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced nodes");
1179 break;
1180 case(Elements):
1181 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements");
1182 break;
1183 case(ReducedElements):
1184 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements with reduced integration order");
1185 break;
1186 case (FaceElements):
1187 Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1188 break;
1189 case (ReducedFaceElements):
1190 Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1191 break;
1192 case(Points):
1193 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for point elements");
1194 break;
1195 case (ContactElementsOne):
1196 case (ContactElementsZero):
1197 Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1198 break;
1199 case (ReducedContactElementsOne):
1200 case (ReducedContactElementsZero):
1201 Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1202 break;
1203 case(DegreesOfFreedom):
1204 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for degrees of freedom.");
1205 break;
1206 case(ReducedDegreesOfFreedom):
1207 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced degrees of freedom.");
1208 break;
1209 default:
1210 stringstream temp;
1211 temp << "Error - Normal Vectors: Finley does not know anything about function space type " << normal.getFunctionSpace().getTypeCode();
1212 throw FinleyAdapterException(temp.str());
1213 break;
1214 }
1215 checkFinleyError();
1216 }
1217
1218 //
1219 // interpolates data to other domain:
1220 //
1221 void MeshAdapter::interpolateACross(escript::Data& target,const escript::Data& source) const
1222 {
1223 const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());
1224 if (targetDomain!=*this)
1225 throw FinleyAdapterException("Error - Illegal domain of interpolation target");
1226
1227 throw FinleyAdapterException("Error - Finley does not allow interpolation across domains yet.");
1228 }
1229
1230 //
1231 // calculates the integral of a function defined of arg:
1232 //
1233 void MeshAdapter::setToIntegrals(std::vector<double>& integrals,const escript::Data& arg) const
1234 {
1235 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1236 if (argDomain!=*this)
1237 throw FinleyAdapterException("Error - Illegal domain of integration kernel");
1238
1239 double blocktimer_start = blocktimer_time();
1240 Finley_Mesh* mesh=m_finleyMesh.get();
1241 escriptDataC _temp;
1242 escript::Data temp;
1243 escriptDataC _arg=arg.getDataC();
1244 switch(arg.getFunctionSpace().getTypeCode()) {
1245 case(Nodes):
1246 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1247 _temp=temp.getDataC();
1248 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1249 break;
1250 case(ReducedNodes):
1251 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1252 _temp=temp.getDataC();
1253 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1254 break;
1255 case(Elements):
1256 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1257 break;
1258 case(ReducedElements):
1259 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1260 break;
1261 case(FaceElements):
1262 Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1263 break;
1264 case(ReducedFaceElements):
1265 Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1266 break;
1267 case(Points):
1268 throw FinleyAdapterException("Error - Integral of data on points is not supported.");
1269 break;
1270 case(ContactElementsZero):
1271 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1272 break;
1273 case(ReducedContactElementsZero):
1274 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1275 break;
1276 case(ContactElementsOne):
1277 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1278 break;
1279 case(ReducedContactElementsOne):
1280 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1281 break;
1282 case(DegreesOfFreedom):
1283 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1284 _temp=temp.getDataC();
1285 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1286 break;
1287 case(ReducedDegreesOfFreedom):
1288 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1289 _temp=temp.getDataC();
1290 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1291 break;
1292 default:
1293 stringstream temp;
1294 temp << "Error - Integrals: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1295 throw FinleyAdapterException(temp.str());
1296 break;
1297 }
1298 checkFinleyError();
1299 blocktimer_increment("integrate()", blocktimer_start);
1300 }
1301
1302 //
1303 // calculates the gradient of arg:
1304 //
1305 void MeshAdapter::setToGradient(escript::Data& grad,const escript::Data& arg) const
1306 {
1307 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1308 if (argDomain!=*this)
1309 throw FinleyAdapterException("Error - Illegal domain of gradient argument");
1310 const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(grad.getFunctionSpace().getDomain());
1311 if (gradDomain!=*this)
1312 throw FinleyAdapterException("Error - Illegal domain of gradient");
1313
1314 Finley_Mesh* mesh=m_finleyMesh.get();
1315 escriptDataC _grad=grad.getDataC();
1316 escriptDataC nodeDataC;
1317 escript::Data temp;
1318 if (getMPISize()>1) {
1319 if( arg.getFunctionSpace().getTypeCode() == DegreesOfFreedom ) {
1320 temp=escript::Data( arg, continuousFunction(asAbstractContinuousDomain()) );
1321 nodeDataC = temp.getDataC();
1322 } else if( arg.getFunctionSpace().getTypeCode() == ReducedDegreesOfFreedom ) {
1323 temp=escript::Data( arg, reducedContinuousFunction(asAbstractContinuousDomain()) );
1324 nodeDataC = temp.getDataC();
1325 } else {
1326 nodeDataC = arg.getDataC();
1327 }
1328 } else {
1329 nodeDataC = arg.getDataC();
1330 }
1331 switch(grad.getFunctionSpace().getTypeCode()) {
1332 case(Nodes):
1333 throw FinleyAdapterException("Error - Gradient at nodes is not supported.");
1334 break;
1335 case(ReducedNodes):
1336 throw FinleyAdapterException("Error - Gradient at reduced nodes is not supported.");
1337 break;
1338 case(Elements):
1339 Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1340 break;
1341 case(ReducedElements):
1342 Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1343 break;
1344 case(FaceElements):
1345 Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1346 break;
1347 case(ReducedFaceElements):
1348 Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1349 break;
1350 case(Points):
1351 throw FinleyAdapterException("Error - Gradient at points is not supported.");
1352 break;
1353 case(ContactElementsZero):
1354 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1355 break;
1356 case(ReducedContactElementsZero):
1357 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1358 break;
1359 case(ContactElementsOne):
1360 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1361 break;
1362 case(ReducedContactElementsOne):
1363 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1364 break;
1365 case(DegreesOfFreedom):
1366 throw FinleyAdapterException("Error - Gradient at degrees of freedom is not supported.");
1367 break;
1368 case(ReducedDegreesOfFreedom):
1369 throw FinleyAdapterException("Error - Gradient at reduced degrees of freedom is not supported.");
1370 break;
1371 default:
1372 stringstream temp;
1373 temp << "Error - Gradient: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1374 throw FinleyAdapterException(temp.str());
1375 break;
1376 }
1377 checkFinleyError();
1378 }
1379
1380 //
1381 // returns the size of elements:
1382 //
1383 void MeshAdapter::setToSize(escript::Data& size) const
1384 {
1385 Finley_Mesh* mesh=m_finleyMesh.get();
1386 escriptDataC tmp=size.getDataC();
1387 switch(size.getFunctionSpace().getTypeCode()) {
1388 case(Nodes):
1389 throw FinleyAdapterException("Error - Size of nodes is not supported.");
1390 break;
1391 case(ReducedNodes):
1392 throw FinleyAdapterException("Error - Size of reduced nodes is not supported.");
1393 break;
1394 case(Elements):
1395 Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1396 break;
1397 case(ReducedElements):
1398 Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1399 break;
1400 case(FaceElements):
1401 Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1402 break;
1403 case(ReducedFaceElements):
1404 Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1405 break;
1406 case(Points):
1407 throw FinleyAdapterException("Error - Size of point elements is not supported.");
1408 break;
1409 case(ContactElementsZero):
1410 case(ContactElementsOne):
1411 Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1412 break;
1413 case(ReducedContactElementsZero):
1414 case(ReducedContactElementsOne):
1415 Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1416 break;
1417 case(DegreesOfFreedom):
1418 throw FinleyAdapterException("Error - Size of degrees of freedom is not supported.");
1419 break;
1420 case(ReducedDegreesOfFreedom):
1421 throw FinleyAdapterException("Error - Size of reduced degrees of freedom is not supported.");
1422 break;
1423 default:
1424 stringstream temp;
1425 temp << "Error - Element size: Finley does not know anything about function space type " << size.getFunctionSpace().getTypeCode();
1426 throw FinleyAdapterException(temp.str());
1427 break;
1428 }
1429 checkFinleyError();
1430 }
1431
1432 // sets the location of nodes:
1433 void MeshAdapter::setNewX(const escript::Data& new_x)
1434 {
1435 Finley_Mesh* mesh=m_finleyMesh.get();
1436 escriptDataC tmp;
1437 const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(new_x.getFunctionSpace().getDomain());
1438 if (newDomain!=*this)
1439 throw FinleyAdapterException("Error - Illegal domain of new point locations");
1440 tmp = new_x.getDataC();
1441 Finley_Mesh_setCoordinates(mesh,&tmp);
1442 checkFinleyError();
1443 }
1444
1445 // saves a data array in openDX format:
1446 void MeshAdapter::saveDX(const std::string& filename,const boost::python::dict& arg) const
1447 {
1448 unsigned int MAX_namelength=IS_THERE_A_REASON_FOR_THIS_MAGIC_NAME_LENGTH;
1449 const int num_data=boost::python::extract<int>(arg.attr("__len__")());
1450 /* win32 refactor */
1451 char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1452 for(int i=0;i<num_data;i++)
1453 {
1454 names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;
1455 }
1456
1457 char* *c_names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1458 escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;
1459 escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;
1460
1461 boost::python::list keys=arg.keys();
1462 for (int i=0;i<num_data;++i) {
1463 std::string n=boost::python::extract<std::string>(keys[i]);
1464 escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1465 if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)
1466 throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain");
1467 data[i]=d.getDataC();
1468 ptr_data[i]=&(data[i]);
1469 c_names[i]=&(names[i][0]);
1470 if (n.length()>MAX_namelength-1) {
1471 strncpy(c_names[i],n.c_str(),MAX_namelength-1);
1472 c_names[i][MAX_namelength-1]='\0';
1473 } else {
1474 strcpy(c_names[i],n.c_str());
1475 }
1476 }
1477 Finley_Mesh_saveDX(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);
1478 checkFinleyError();
1479
1480 /* win32 refactor */
1481 TMPMEMFREE(c_names);
1482 TMPMEMFREE(data);
1483 TMPMEMFREE(ptr_data);
1484 for(int i=0;i<num_data;i++)
1485 {
1486 TMPMEMFREE(names[i]);
1487 }
1488 TMPMEMFREE(names);
1489
1490 return;
1491 }
1492
1493 // saves a data array in openVTK format:
1494 void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg) const
1495 {
1496 unsigned int MAX_namelength=IS_THERE_A_REASON_FOR_THIS_MAGIC_NAME_LENGTH;
1497 const int num_data=boost::python::extract<int>(arg.attr("__len__")());
1498 /* win32 refactor */
1499 char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1500 for(int i=0;i<num_data;i++)
1501 {
1502 names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;
1503 }
1504
1505 char* *c_names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1506 escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;
1507 escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;
1508
1509 boost::python::list keys=arg.keys();
1510 for (int i=0;i<num_data;++i) {
1511 std::string n=boost::python::extract<std::string>(keys[i]);
1512 escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1513 if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)
1514 throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain");
1515 data[i]=d.getDataC();
1516 ptr_data[i]=&(data[i]);
1517 c_names[i]=&(names[i][0]);
1518 if (n.length()>MAX_namelength-1) {
1519 strncpy(c_names[i],n.c_str(),MAX_namelength-1);
1520 c_names[i][MAX_namelength-1]='\0';
1521 } else {
1522 strcpy(c_names[i],n.c_str());
1523 }
1524 }
1525 Finley_Mesh_saveVTK(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);
1526
1527 checkFinleyError();
1528 /* win32 refactor */
1529 TMPMEMFREE(c_names);
1530 TMPMEMFREE(data);
1531 TMPMEMFREE(ptr_data);
1532 for(int i=0;i<num_data;i++)
1533 {
1534 TMPMEMFREE(names[i]);
1535 }
1536 TMPMEMFREE(names);
1537
1538 return;
1539 }
1540
1541
1542 // creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros:
1543 SystemMatrixAdapter MeshAdapter::newSystemMatrix(
1544 const int row_blocksize,
1545 const escript::FunctionSpace& row_functionspace,
1546 const int column_blocksize,
1547 const escript::FunctionSpace& column_functionspace,
1548 const int type) const
1549 {
1550 int reduceRowOrder=0;
1551 int reduceColOrder=0;
1552 // is the domain right?
1553 const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(row_functionspace.getDomain());
1554 if (row_domain!=*this)
1555 throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator.");
1556 const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(column_functionspace.getDomain());
1557 if (col_domain!=*this)
1558 throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator.");
1559 // is the function space type right
1560 if (row_functionspace.getTypeCode()==DegreesOfFreedom) {
1561 reduceRowOrder=0;
1562 } else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1563 reduceRowOrder=1;
1564 } else {
1565 throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1566 }
1567 if (column_functionspace.getTypeCode()==DegreesOfFreedom) {
1568 reduceColOrder=0;
1569 } else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1570 reduceColOrder=1;
1571 } else {
1572 throw FinleyAdapterException("Error - illegal function space type for system matrix columns.");
1573 }
1574 // generate matrix:
1575
1576 Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder);
1577 checkFinleyError();
1578 Paso_SystemMatrix* fsystemMatrix;
1579 int trilinos = 0;
1580 if (trilinos) {
1581 #ifdef TRILINOS
1582 /* Allocation Epetra_VrbMatrix here */
1583 #endif
1584 }
1585 else {
1586 fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize);
1587 }
1588 checkPasoError();
1589 Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1590 return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace);
1591 }
1592 // creates a TransportProblemAdapter
1593 TransportProblemAdapter MeshAdapter::newTransportProblem(
1594 const double theta,
1595 const int blocksize,
1596 const escript::FunctionSpace& functionspace,
1597 const int type) const
1598 {
1599 int reduceOrder=0;
1600 // is the domain right?
1601 const MeshAdapter& domain=dynamic_cast<const MeshAdapter&>(functionspace.getDomain());
1602 if (domain!=*this)
1603 throw FinleyAdapterException("Error - domain of function space does not match the domain of transport problem generator.");
1604 // is the function space type right
1605 if (functionspace.getTypeCode()==DegreesOfFreedom) {
1606 reduceOrder=0;
1607 } else if (functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1608 reduceOrder=1;
1609 } else {
1610 throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1611 }
1612 // generate matrix:
1613
1614 Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceOrder,reduceOrder);
1615 checkFinleyError();
1616 Paso_FCTransportProblem* transportProblem;
1617 transportProblem=Paso_FCTransportProblem_alloc(theta,fsystemMatrixPattern,blocksize);
1618 checkPasoError();
1619 Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1620 return TransportProblemAdapter(transportProblem,theta,blocksize,functionspace);
1621 }
1622
1623 //
1624 // vtkObject MeshAdapter::createVtkObject() const
1625 // TODO:
1626 //
1627
1628 //
1629 // returns true if data at the atom_type is considered as being cell centered:
1630 bool MeshAdapter::isCellOriented(int functionSpaceCode) const
1631 {
1632 switch(functionSpaceCode) {
1633 case(Nodes):
1634 case(DegreesOfFreedom):
1635 case(ReducedDegreesOfFreedom):
1636 return false;
1637 break;
1638 case(Elements):
1639 case(FaceElements):
1640 case(Points):
1641 case(ContactElementsZero):
1642 case(ContactElementsOne):
1643 case(ReducedElements):
1644 case(ReducedFaceElements):
1645 case(ReducedContactElementsZero):
1646 case(ReducedContactElementsOne):
1647 return true;
1648 break;
1649 default:
1650 stringstream temp;
1651 temp << "Error - Cell: Finley does not know anything about function space type " << functionSpaceCode;
1652 throw FinleyAdapterException(temp.str());
1653 break;
1654 }
1655 checkFinleyError();
1656 return false;
1657 }
1658
1659 bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const
1660 {
1661 switch(functionSpaceType_source) {
1662 case(Nodes):
1663 switch(functionSpaceType_target) {
1664 case(Nodes):
1665 case(ReducedNodes):
1666 case(ReducedDegreesOfFreedom):
1667 case(DegreesOfFreedom):
1668 case(Elements):
1669 case(ReducedElements):
1670 case(FaceElements):
1671 case(ReducedFaceElements):
1672 case(Points):
1673 case(ContactElementsZero):
1674 case(ReducedContactElementsZero):
1675 case(ContactElementsOne):
1676 case(ReducedContactElementsOne):
1677 return true;
1678 default:
1679 stringstream temp;
1680 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1681 throw FinleyAdapterException(temp.str());
1682 }
1683 break;
1684 case(ReducedNodes):
1685 switch(functionSpaceType_target) {
1686 case(ReducedNodes):
1687 case(ReducedDegreesOfFreedom):
1688 case(Elements):
1689 case(ReducedElements):
1690 case(FaceElements):
1691 case(ReducedFaceElements):
1692 case(Points):
1693 case(ContactElementsZero):
1694 case(ReducedContactElementsZero):
1695 case(ContactElementsOne):
1696 case(ReducedContactElementsOne):
1697 return true;
1698 case(Nodes):
1699 case(DegreesOfFreedom):
1700 return false;
1701 default:
1702 stringstream temp;
1703 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1704 throw FinleyAdapterException(temp.str());
1705 }
1706 break;
1707 case(Elements):
1708 if (functionSpaceType_target==Elements) {
1709 return true;
1710 } else if (functionSpaceType_target==ReducedElements) {
1711 return true;
1712 } else {
1713 return false;
1714 }
1715 case(ReducedElements):
1716 if (functionSpaceType_target==ReducedElements) {
1717 return true;
1718 } else {
1719 return false;
1720 }
1721 case(FaceElements):
1722 if (functionSpaceType_target==FaceElements) {
1723 return true;
1724 } else if (functionSpaceType_target==ReducedFaceElements) {
1725 return true;
1726 } else {
1727 return false;
1728 }
1729 case(ReducedFaceElements):
1730 if (functionSpaceType_target==ReducedFaceElements) {
1731 return true;
1732 } else {
1733 return false;
1734 }
1735 case(Points):
1736 if (functionSpaceType_target==Points) {
1737 return true;
1738 } else {
1739 return false;
1740 }
1741 case(ContactElementsZero):
1742 case(ContactElementsOne):
1743 if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {
1744 return true;
1745 } else if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1746 return true;
1747 } else {
1748 return false;
1749 }
1750 case(ReducedContactElementsZero):
1751 case(ReducedContactElementsOne):
1752 if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1753 return true;
1754 } else {
1755 return false;
1756 }
1757 case(DegreesOfFreedom):
1758 switch(functionSpaceType_target) {
1759 case(ReducedDegreesOfFreedom):
1760 case(DegreesOfFreedom):
1761 case(Nodes):
1762 case(ReducedNodes):
1763 case(Elements):
1764 case(ReducedElements):
1765 case(Points):
1766 case(FaceElements):
1767 case(ReducedFaceElements):
1768 case(ContactElementsZero):
1769 case(ReducedContactElementsZero):
1770 case(ContactElementsOne):
1771 case(ReducedContactElementsOne):
1772 return true;
1773 default:
1774 stringstream temp;
1775 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1776 throw FinleyAdapterException(temp.str());
1777 }
1778 break;
1779 case(ReducedDegreesOfFreedom):
1780 switch(functionSpaceType_target) {
1781 case(ReducedDegreesOfFreedom):
1782 case(ReducedNodes):
1783 case(Elements):
1784 case(ReducedElements):
1785 case(FaceElements):
1786 case(ReducedFaceElements):
1787 case(Points):
1788 case(ContactElementsZero):
1789 case(ReducedContactElementsZero):
1790 case(ContactElementsOne):
1791 case(ReducedContactElementsOne):
1792 return true;
1793 case(Nodes):
1794 case(DegreesOfFreedom):
1795 return false;
1796 default:
1797 stringstream temp;
1798 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1799 throw FinleyAdapterException(temp.str());
1800 }
1801 break;
1802 default:
1803 stringstream temp;
1804 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;
1805 throw FinleyAdapterException(temp.str());
1806 break;
1807 }
1808 checkFinleyError();
1809 return false;
1810 }
1811
1812 bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const
1813 {
1814 return false;
1815 }
1816
1817 bool MeshAdapter::operator==(const AbstractDomain& other) const
1818 {
1819 const MeshAdapter* temp=dynamic_cast<const MeshAdapter*>(&other);
1820 if (temp!=0) {
1821 return (m_finleyMesh==temp->m_finleyMesh);
1822 } else {
1823 return false;
1824 }
1825 }
1826
1827 bool MeshAdapter::operator!=(const AbstractDomain& other) const
1828 {
1829 return !(operator==(other));
1830 }
1831
1832 int MeshAdapter::getSystemMatrixTypeId(const int solver, const int package, const bool symmetry) const
1833 {
1834 int out=Paso_SystemMatrix_getSystemMatrixTypeId(SystemMatrixAdapter::mapOptionToPaso(solver),SystemMatrixAdapter::mapOptionToPaso(package),symmetry?1:0);
1835 checkPasoError();
1836 return out;
1837 }
1838
1839 escript::Data MeshAdapter::getX() const
1840 {
1841 return continuousFunction(asAbstractContinuousDomain()).getX();
1842 }
1843
1844 escript::Data MeshAdapter::getNormal() const
1845 {
1846 return functionOnBoundary(asAbstractContinuousDomain()).getNormal();
1847 }
1848
1849 escript::Data MeshAdapter::getSize() const
1850 {
1851 return function(asAbstractContinuousDomain()).getSize();
1852 }
1853
1854 int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const
1855 {
1856 int *out = NULL;
1857 Finley_Mesh* mesh=m_finleyMesh.get();
1858 switch (functionSpaceType) {
1859 case(Nodes):
1860 out=mesh->Nodes->Id;
1861 break;
1862 case(ReducedNodes):
1863 out=mesh->Nodes->reducedNodesId;
1864 break;
1865 case(Elements):
1866 out=mesh->Elements->Id;
1867 break;
1868 case(ReducedElements):
1869 out=mesh->Elements->Id;
1870 break;
1871 case(FaceElements):
1872 out=mesh->FaceElements->Id;
1873 break;
1874 case(ReducedFaceElements):
1875 out=mesh->FaceElements->Id;
1876 break;
1877 case(Points):
1878 out=mesh->Points->Id;
1879 break;
1880 case(ContactElementsZero):
1881 out=mesh->ContactElements->Id;
1882 break;
1883 case(ReducedContactElementsZero):
1884 out=mesh->ContactElements->Id;
1885 break;
1886 case(ContactElementsOne):
1887 out=mesh->ContactElements->Id;
1888 break;
1889 case(ReducedContactElementsOne):
1890 out=mesh->ContactElements->Id;
1891 break;
1892 case(DegreesOfFreedom):
1893 out=mesh->Nodes->degreesOfFreedomId;
1894 break;
1895 case(ReducedDegreesOfFreedom):
1896 out=mesh->Nodes->reducedDegreesOfFreedomId;
1897 break;
1898 default:
1899 stringstream temp;
1900 temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
1901 throw FinleyAdapterException(temp.str());
1902 break;
1903 }
1904 return out;
1905 }
1906 int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const
1907 {
1908 int out=0;
1909 Finley_Mesh* mesh=m_finleyMesh.get();
1910 switch (functionSpaceType) {
1911 case(Nodes):
1912 out=mesh->Nodes->Tag[sampleNo];
1913 break;
1914 case(ReducedNodes):
1915 throw FinleyAdapterException(" Error - ReducedNodes does not support tags.");
1916 break;
1917 case(Elements):
1918 out=mesh->Elements->Tag[sampleNo];
1919 break;
1920 case(ReducedElements):
1921 out=mesh->Elements->Tag[sampleNo];
1922 break;
1923 case(FaceElements):
1924 out=mesh->FaceElements->Tag[sampleNo];
1925 break;
1926 case(ReducedFaceElements):
1927 out=mesh->FaceElements->Tag[sampleNo];
1928 break;
1929 case(Points):
1930 out=mesh->Points->Tag[sampleNo];
1931 break;
1932 case(ContactElementsZero):
1933 out=mesh->ContactElements->Tag[sampleNo];
1934 break;
1935 case(ReducedContactElementsZero):
1936 out=mesh->ContactElements->Tag[sampleNo];
1937 break;
1938 case(ContactElementsOne):
1939 out=mesh->ContactElements->Tag[sampleNo];
1940 break;
1941 case(ReducedContactElementsOne):
1942 out=mesh->ContactElements->Tag[sampleNo];
1943 break;
1944 case(DegreesOfFreedom):
1945 throw FinleyAdapterException(" Error - DegreesOfFreedom does not support tags.");
1946 break;
1947 case(ReducedDegreesOfFreedom):
1948 throw FinleyAdapterException(" Error - ReducedDegreesOfFreedom does not support tags.");
1949 break;
1950 default:
1951 stringstream temp;
1952 temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
1953 throw FinleyAdapterException(temp.str());
1954 break;
1955 }
1956 return out;
1957 }
1958
1959
1960 void MeshAdapter::setTags(const int functionSpaceType, const int newTag, const escript::Data& mask) const
1961 {
1962 Finley_Mesh* mesh=m_finleyMesh.get();
1963 escriptDataC tmp=mask.getDataC();
1964 switch(functionSpaceType) {
1965 case(Nodes):
1966 Finley_NodeFile_setTags(mesh->Nodes,newTag,&tmp);
1967 break;
1968 case(ReducedNodes):
1969 throw FinleyAdapterException("Error - ReducedNodes does not support tags");
1970 break;
1971 case(DegreesOfFreedom):
1972 throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
1973 break;
1974 case(ReducedDegreesOfFreedom):
1975 throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
1976 break;
1977 case(Elements):
1978 Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
1979 break;
1980 case(ReducedElements):
1981 Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
1982 break;
1983 case(FaceElements):
1984 Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
1985 break;
1986 case(ReducedFaceElements):
1987 Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
1988 break;
1989 case(Points):
1990 Finley_ElementFile_setTags(mesh->Points,newTag,&tmp);
1991 break;
1992 case(ContactElementsZero):
1993 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
1994 break;
1995 case(ReducedContactElementsZero):
1996 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
1997 break;
1998 case(ContactElementsOne):
1999 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2000 break;
2001 case(ReducedContactElementsOne):
2002 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2003 break;
2004 default:
2005 stringstream temp;
2006 temp << "Error - Finley does not know anything about function space type " << functionSpaceType;
2007 throw FinleyAdapterException(temp.str());
2008 }
2009 checkFinleyError();
2010 return;
2011 }
2012
2013 void MeshAdapter::setTagMap(const std::string& name, int tag)
2014 {
2015 Finley_Mesh* mesh=m_finleyMesh.get();
2016 Finley_Mesh_addTagMap(mesh, name.c_str(),tag);
2017 checkPasoError();
2018 // throwStandardException("MeshAdapter::set TagMap is not implemented.");
2019 }
2020
2021 int MeshAdapter::getTag(const std::string& name) const
2022 {
2023 Finley_Mesh* mesh=m_finleyMesh.get();
2024 int tag=0;
2025 tag=Finley_Mesh_getTag(mesh, name.c_str());
2026 checkPasoError();
2027 // throwStandardException("MeshAdapter::getTag is not implemented.");
2028 return tag;
2029 }
2030
2031 bool MeshAdapter::isValidTagName(const std::string& name) const
2032 {
2033 Finley_Mesh* mesh=m_finleyMesh.get();
2034 return Finley_Mesh_isValidTagName(mesh,name.c_str());
2035 }
2036
2037 std::string MeshAdapter::showTagNames() const
2038 {
2039 stringstream temp;
2040 Finley_Mesh* mesh=m_finleyMesh.get();
2041 Finley_TagMap* tag_map=mesh->TagMap;
2042 while (tag_map) {
2043 temp << tag_map->name;
2044 tag_map=tag_map->next;
2045 if (tag_map) temp << ", ";
2046 }
2047 return temp.str();
2048 }
2049
2050 } // end of namespace

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