/[escript]/trunk/finley/src/CPPAdapter/MeshAdapter.cpp
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trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp revision 104 by jgs, Fri Dec 17 07:43:12 2004 UTC trunk/finley/src/CPPAdapter/MeshAdapter.cpp revision 3998 by caltinay, Thu Sep 27 01:17:28 2012 UTC
# Line 1  Line 1 
1  // $Id$  
2  /*  /*****************************************************************************
3   ******************************************************************************  *
4   *                                                                            *  * Copyright (c) 2003-2012 by University of Queensland
5   *       COPYRIGHT  ACcESS 2004 -  All Rights Reserved                        *  * http://www.uq.edu.au
6   *                                                                            *  *
7   * This software is the property of ACcESS. No part of this code              *  * Primary Business: Queensland, Australia
8   * may be copied in any form or by any means without the expressed written    *  * Licensed under the Open Software License version 3.0
9   * consent of ACcESS.  Copying, use or modification of this software          *  * http://www.opensource.org/licenses/osl-3.0.php
10   * by any unauthorised person is illegal unless that person has a software    *  *
11   * license agreement with ACcESS.                                             *  * Development until 2012 by Earth Systems Science Computational Center (ESSCC)
12   *                                                                            *  * Development since 2012 by School of Earth Sciences
13   ******************************************************************************  *
14  */  *****************************************************************************/
15    
16    #include <pasowrap/PasoException.h>
17    #include <pasowrap/TransportProblemAdapter.h>
18    #include "MeshAdapter.h"
19    #include "escript/Data.h"
20    #include "escript/DataFactory.h"
21    #ifdef USE_NETCDF
22    #include <netcdfcpp.h>
23    #endif
24  extern "C" {  extern "C" {
25  #include "finley/finleyC/Finley.h"  #include "esysUtils/blocktimer.h"
26  #include "finley/finleyC/Assemble.h"  }
27  #include "finley/finleyC/Mesh.h"  
28  #include "finley/finleyC/Finley.h"  #include <boost/python/import.hpp>
 #include "finley/finleyC/System.h"  
 }  
 #include "finley/CPPAdapter/SystemMatrixAdapter.h"  
 #include "finley/CPPAdapter/MeshAdapter.h"  
 #include "finley/CPPAdapter/FinleyError.h"  
 #include "finley/CPPAdapter/FinleyAdapterException.h"  
 #include "escript/Data/FunctionSpaceFactory.h"  
 #include "escript/Data/Data.h"  
 #include "escript/Data/DataArrayView.h"  
 #include "escript/Data/FunctionSpace.h"  
 #include "escript/Data/DataFactory.h"  
 #include <iostream>  
 #include <vector>  
 #include <sstream>  
29    
30  using namespace std;  using namespace std;
31  using namespace escript;  using namespace escript;
32    using namespace paso;
33    
34  namespace finley {  namespace finley {
35    
 struct null_deleter  
 {  
   void operator()(void const *ptr) const  
   {  
   }  
 };  
   
36  //  //
37  // define the statics  // define the static constants
38  MeshAdapter::FunctionSpaceNamesMapType MeshAdapter::m_functionSpaceTypeNames;  MeshAdapter::FunctionSpaceNamesMapType MeshAdapter::m_functionSpaceTypeNames;
39  const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM;  const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM;
40  const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM;  const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM;
41  const int MeshAdapter::Nodes=FINLEY_NODES;  const int MeshAdapter::Nodes=FINLEY_NODES;
42    const int MeshAdapter::ReducedNodes=FINLEY_REDUCED_NODES;
43  const int MeshAdapter::Elements=FINLEY_ELEMENTS;  const int MeshAdapter::Elements=FINLEY_ELEMENTS;
44    const int MeshAdapter::ReducedElements=FINLEY_REDUCED_ELEMENTS;
45  const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS;  const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS;
46    const int MeshAdapter::ReducedFaceElements=FINLEY_REDUCED_FACE_ELEMENTS;
47  const int MeshAdapter::Points=FINLEY_POINTS;  const int MeshAdapter::Points=FINLEY_POINTS;
48  const int MeshAdapter::ContactElementsZero=FINLEY_CONTACT_ELEMENTS_1;  const int MeshAdapter::ContactElementsZero=FINLEY_CONTACT_ELEMENTS_1;
49    const int MeshAdapter::ReducedContactElementsZero=FINLEY_REDUCED_CONTACT_ELEMENTS_1;
50  const int MeshAdapter::ContactElementsOne=FINLEY_CONTACT_ELEMENTS_2;  const int MeshAdapter::ContactElementsOne=FINLEY_CONTACT_ELEMENTS_2;
51    const int MeshAdapter::ReducedContactElementsOne=FINLEY_REDUCED_CONTACT_ELEMENTS_2;
52    
53  MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh)  MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh)
54  {  {
55    setFunctionSpaceTypeNames();     setFunctionSpaceTypeNames();
56    //     //
57    // need to use a null_deleter as Finley_Mesh_dealloc deletes the pointer     // need to use a null_deleter as Finley_Mesh_free deletes the pointer
58    // for us.     // for us.
59    m_finleyMesh.reset(finleyMesh,null_deleter());     m_finleyMesh.reset(finleyMesh,null_deleter());
60  }  }
61    
62  //  //
63  // The copy constructor should just increment the use count  // The copy constructor should just increment the use count
64  MeshAdapter::MeshAdapter(const MeshAdapter& in):  MeshAdapter::MeshAdapter(const MeshAdapter& in):
65  m_finleyMesh(in.m_finleyMesh)  m_finleyMesh(in.m_finleyMesh)
66  {  {
67    setFunctionSpaceTypeNames();     setFunctionSpaceTypeNames();
68  }  }
69    
70  MeshAdapter::~MeshAdapter()  MeshAdapter::~MeshAdapter()
71  {  {
72    //     //
73    // I hope the case for the pointer being zero has been taken care of.     // I hope the case for the pointer being zero has been taken care of.
74    //  cout << "In MeshAdapter destructor." << endl;     //  cout << "In MeshAdapter destructor." << endl;
75    if (m_finleyMesh.unique()) {     if (m_finleyMesh.unique()) {
76      //   cout << "Calling dealloc." << endl;        Finley_Mesh_free(m_finleyMesh.get());
77      Finley_Mesh_dealloc(m_finleyMesh.get());     }
     //   cout << "Finished dealloc." << endl;  
   }  
78  }  }
79    
80    int MeshAdapter::getMPISize() const
81    {
82       return m_finleyMesh.get()->MPIInfo->size;
83    }
84    int MeshAdapter::getMPIRank() const
85    {
86       return m_finleyMesh.get()->MPIInfo->rank;
87    }
88    void MeshAdapter::MPIBarrier() const
89    {
90    #ifdef ESYS_MPI
91       MPI_Barrier(m_finleyMesh.get()->MPIInfo->comm);
92    #endif
93       return;
94    }
95    bool MeshAdapter::onMasterProcessor() const
96    {
97       return m_finleyMesh.get()->MPIInfo->rank == 0;
98    }
99    
100    
101    #ifdef ESYS_MPI
102      MPI_Comm
103    #else
104      unsigned int
105    #endif
106    MeshAdapter::getMPIComm() const
107    {
108    #ifdef ESYS_MPI
109        return m_finleyMesh->MPIInfo->comm;
110    #else
111        return 0;
112    #endif
113    }
114    
115    
116  Finley_Mesh* MeshAdapter::getFinley_Mesh() const {  Finley_Mesh* MeshAdapter::getFinley_Mesh() const {
117     return m_finleyMesh.get();     return m_finleyMesh.get();
118  }  }
119    
120  void MeshAdapter::write(const std::string& fileName) const  void MeshAdapter::write(const string& fileName) const
121  {  {
122    char fName[fileName.size()+1];     char *fName = (fileName.size()+1>0) ? TMPMEMALLOC(fileName.size()+1,char) : (char*)NULL;
123    strcpy(fName,fileName.c_str());     strcpy(fName,fileName.c_str());
124    Finley_Mesh_write(m_finleyMesh.get(),fName);     Finley_Mesh_write(m_finleyMesh.get(),fName);
125    checkFinleyError();     checkFinleyError();
126       TMPMEMFREE(fName);
127  }  }
128    
129  // void MeshAdapter::getTagList(int functionSpaceType,  void MeshAdapter::Print_Mesh_Info(const bool full) const
130  //                  int* numTags) const  {
131  // {     Finley_PrintMesh_Info(m_finleyMesh.get(), full);
132  //   Finley_Mesh_tagList(m_finleyMesh.get(),functionSpaceType,tagList,numTags);  }
133  //   return;  
134  // }  void MeshAdapter::dump(const string& fileName) const
135    {
136    #ifdef USE_NETCDF
137       const NcDim* ncdims[12] = {NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL};
138       NcVar *ids;
139       int *int_ptr;
140       Finley_Mesh *mesh = m_finleyMesh.get();
141       Finley_TagMap* tag_map;
142       int num_Tags = 0;
143       int mpi_size             = mesh->MPIInfo->size;
144       int mpi_rank             = mesh->MPIInfo->rank;
145       int numDim               = mesh->Nodes->numDim;
146       int numNodes             = mesh->Nodes->numNodes;
147       int num_Elements         = mesh->Elements->numElements;
148       int num_FaceElements         = mesh->FaceElements->numElements;
149       int num_ContactElements      = mesh->ContactElements->numElements;
150       int num_Points           = mesh->Points->numElements;
151       int num_Elements_numNodes        = mesh->Elements->numNodes;
152       int num_FaceElements_numNodes    = mesh->FaceElements->numNodes;
153       int num_ContactElements_numNodes = mesh->ContactElements->numNodes;
154    #ifdef ESYS_MPI
155       MPI_Status status;
156    #endif
157    
158    /* Incoming token indicates it's my turn to write */
159    #ifdef ESYS_MPI
160       if (mpi_rank>0) MPI_Recv(&num_Tags, 0, MPI_INT, mpi_rank-1, 81800, mesh->MPIInfo->comm, &status);
161    #endif
162    
163       char *newFileName = Esys_MPI_appendRankToFileName(fileName.c_str(),
164                                                         mpi_size, mpi_rank);
165    
166       /* Figure out how much storage is required for tags */
167       tag_map = mesh->TagMap;
168       num_Tags = 0;
169       while (tag_map) {
170          num_Tags++;
171          tag_map=tag_map->next;
172       }
173    
174       // NetCDF error handler
175       NcError err(NcError::verbose_nonfatal);
176       // Create the file.
177       NcFile dataFile(newFileName, NcFile::Replace);
178       string msgPrefix("Error in MeshAdapter::dump: NetCDF operation failed - ");
179       // check if writing was successful
180       if (!dataFile.is_valid())
181          throw DataException(msgPrefix+"Open file for output");
182    
183       // Define dimensions (num_Elements and dim_Elements are identical,
184       // dim_Elements only appears if > 0)
185       if (! (ncdims[0] = dataFile.add_dim("numNodes", numNodes)) )
186          throw DataException(msgPrefix+"add_dim(numNodes)");
187       if (! (ncdims[1] = dataFile.add_dim("numDim", numDim)) )
188          throw DataException(msgPrefix+"add_dim(numDim)");
189       if (! (ncdims[2] = dataFile.add_dim("mpi_size_plus_1", mpi_size+1)) )
190          throw DataException(msgPrefix+"add_dim(mpi_size)");
191       if (num_Elements>0)
192          if (! (ncdims[3] = dataFile.add_dim("dim_Elements", num_Elements)) )
193             throw DataException(msgPrefix+"add_dim(dim_Elements)");
194       if (num_FaceElements>0)
195          if (! (ncdims[4] = dataFile.add_dim("dim_FaceElements", num_FaceElements)) )
196             throw DataException(msgPrefix+"add_dim(dim_FaceElements)");
197       if (num_ContactElements>0)
198          if (! (ncdims[5] = dataFile.add_dim("dim_ContactElements", num_ContactElements)) )
199             throw DataException(msgPrefix+"add_dim(dim_ContactElements)");
200       if (num_Points>0)
201          if (! (ncdims[6] = dataFile.add_dim("dim_Points", num_Points)) )
202             throw DataException(msgPrefix+"add_dim(dim_Points)");
203       if (num_Elements>0)
204          if (! (ncdims[7] = dataFile.add_dim("dim_Elements_Nodes", num_Elements_numNodes)) )
205             throw DataException(msgPrefix+"add_dim(dim_Elements_Nodes)");
206       if (num_FaceElements>0)
207          if (! (ncdims[8] = dataFile.add_dim("dim_FaceElements_numNodes", num_FaceElements_numNodes)) )
208             throw DataException(msgPrefix+"add_dim(dim_FaceElements_numNodes)");
209       if (num_ContactElements>0)
210          if (! (ncdims[9] = dataFile.add_dim("dim_ContactElements_numNodes", num_ContactElements_numNodes)) )
211             throw DataException(msgPrefix+"add_dim(dim_ContactElements_numNodes)");
212       if (num_Tags>0)
213          if (! (ncdims[10] = dataFile.add_dim("dim_Tags", num_Tags)) )
214             throw DataException(msgPrefix+"add_dim(dim_Tags)");
215    
216       // Attributes: MPI size, MPI rank, Name, order, reduced_order
217       if (!dataFile.add_att("mpi_size", mpi_size) )
218          throw DataException(msgPrefix+"add_att(mpi_size)");
219       if (!dataFile.add_att("mpi_rank", mpi_rank) )
220          throw DataException(msgPrefix+"add_att(mpi_rank)");
221       if (!dataFile.add_att("Name",mesh->Name) )
222          throw DataException(msgPrefix+"add_att(Name)");
223       if (!dataFile.add_att("numDim",numDim) )
224          throw DataException(msgPrefix+"add_att(order)");
225       if (!dataFile.add_att("order",mesh->integrationOrder) )
226          throw DataException(msgPrefix+"add_att(order)");
227       if (!dataFile.add_att("reduced_order",mesh->reducedIntegrationOrder) )
228          throw DataException(msgPrefix+"add_att(reduced_order)");
229       if (!dataFile.add_att("numNodes",numNodes) )
230          throw DataException(msgPrefix+"add_att(numNodes)");
231       if (!dataFile.add_att("num_Elements",num_Elements) )
232          throw DataException(msgPrefix+"add_att(num_Elements)");
233       if (!dataFile.add_att("num_FaceElements",num_FaceElements) )
234          throw DataException(msgPrefix+"add_att(num_FaceElements)");
235       if (!dataFile.add_att("num_ContactElements",num_ContactElements) )
236          throw DataException(msgPrefix+"add_att(num_ContactElements)");
237       if (!dataFile.add_att("num_Points",num_Points) )
238          throw DataException(msgPrefix+"add_att(num_Points)");
239       if (!dataFile.add_att("num_Elements_numNodes",num_Elements_numNodes) )
240          throw DataException(msgPrefix+"add_att(num_Elements_numNodes)");
241       if (!dataFile.add_att("num_FaceElements_numNodes",num_FaceElements_numNodes) )
242          throw DataException(msgPrefix+"add_att(num_FaceElements_numNodes)");
243       if (!dataFile.add_att("num_ContactElements_numNodes",num_ContactElements_numNodes) )
244          throw DataException(msgPrefix+"add_att(num_ContactElements_numNodes)");
245       if (!dataFile.add_att("Elements_TypeId", mesh->Elements->referenceElementSet->referenceElement->Type->TypeId) )
246          throw DataException(msgPrefix+"add_att(Elements_TypeId)");
247       if (!dataFile.add_att("FaceElements_TypeId", mesh->FaceElements->referenceElementSet->referenceElement->Type->TypeId) )
248          throw DataException(msgPrefix+"add_att(FaceElements_TypeId)");
249       if (!dataFile.add_att("ContactElements_TypeId", mesh->ContactElements->referenceElementSet->referenceElement->Type->TypeId) )
250          throw DataException(msgPrefix+"add_att(ContactElements_TypeId)");
251       if (!dataFile.add_att("Points_TypeId", mesh->Points->referenceElementSet->referenceElement->Type->TypeId) )
252          throw DataException(msgPrefix+"add_att(Points_TypeId)");
253       if (!dataFile.add_att("num_Tags", num_Tags) )
254          throw DataException(msgPrefix+"add_att(num_Tags)");
255    
256       // // // // // Nodes // // // // //
257    
258       // Nodes nodeDistribution
259       if (! ( ids = dataFile.add_var("Nodes_NodeDistribution", ncInt, ncdims[2])) )
260          throw DataException(msgPrefix+"add_var(Nodes_NodeDistribution)");
261       int_ptr = &mesh->Nodes->nodesDistribution->first_component[0];
262       if (! (ids->put(int_ptr, mpi_size+1)) )
263          throw DataException(msgPrefix+"put(Nodes_NodeDistribution)");
264    
265       // Nodes degreesOfFreedomDistribution
266       if (! ( ids = dataFile.add_var("Nodes_DofDistribution", ncInt, ncdims[2])) )
267          throw DataException(msgPrefix+"add_var(Nodes_DofDistribution)");
268       int_ptr = &mesh->Nodes->degreesOfFreedomDistribution->first_component[0];
269       if (! (ids->put(int_ptr, mpi_size+1)) )
270          throw DataException(msgPrefix+"put(Nodes_DofDistribution)");
271    
272       // Only write nodes if non-empty because NetCDF doesn't like empty arrays
273       // (it treats them as NC_UNLIMITED)
274       if (numNodes>0) {
275    
276          // Nodes Id
277          if (! ( ids = dataFile.add_var("Nodes_Id", ncInt, ncdims[0])) )
278             throw DataException(msgPrefix+"add_var(Nodes_Id)");
279          int_ptr = &mesh->Nodes->Id[0];
280          if (! (ids->put(int_ptr, numNodes)) )
281             throw DataException(msgPrefix+"put(Nodes_Id)");
282    
283          // Nodes Tag
284          if (! ( ids = dataFile.add_var("Nodes_Tag", ncInt, ncdims[0])) )
285             throw DataException(msgPrefix+"add_var(Nodes_Tag)");
286          int_ptr = &mesh->Nodes->Tag[0];
287          if (! (ids->put(int_ptr, numNodes)) )
288             throw DataException(msgPrefix+"put(Nodes_Tag)");
289    
290          // Nodes gDOF
291          if (! ( ids = dataFile.add_var("Nodes_gDOF", ncInt, ncdims[0])) )
292             throw DataException(msgPrefix+"add_var(Nodes_gDOF)");
293          int_ptr = &mesh->Nodes->globalDegreesOfFreedom[0];
294          if (! (ids->put(int_ptr, numNodes)) )
295             throw DataException(msgPrefix+"put(Nodes_gDOF)");
296    
297          // Nodes global node index
298          if (! ( ids = dataFile.add_var("Nodes_gNI", ncInt, ncdims[0])) )
299             throw DataException(msgPrefix+"add_var(Nodes_gNI)");
300          int_ptr = &mesh->Nodes->globalNodesIndex[0];
301          if (! (ids->put(int_ptr, numNodes)) )
302             throw DataException(msgPrefix+"put(Nodes_gNI)");
303    
304          // Nodes grDof
305          if (! ( ids = dataFile.add_var("Nodes_grDfI", ncInt, ncdims[0])) )
306             throw DataException(msgPrefix+"add_var(Nodes_grDfI)");
307          int_ptr = &mesh->Nodes->globalReducedDOFIndex[0];
308          if (! (ids->put(int_ptr, numNodes)) )
309             throw DataException(msgPrefix+"put(Nodes_grDfI)");
310    
311          // Nodes grNI
312          if (! ( ids = dataFile.add_var("Nodes_grNI", ncInt, ncdims[0])) )
313             throw DataException(msgPrefix+"add_var(Nodes_grNI)");
314          int_ptr = &mesh->Nodes->globalReducedNodesIndex[0];
315          if (! (ids->put(int_ptr, numNodes)) )
316             throw DataException(msgPrefix+"put(Nodes_grNI)");
317    
318          // Nodes Coordinates
319          if (! ( ids = dataFile.add_var("Nodes_Coordinates", ncDouble, ncdims[0], ncdims[1]) ) )
320             throw DataException(msgPrefix+"add_var(Nodes_Coordinates)");
321          if (! (ids->put(&(mesh->Nodes->Coordinates[INDEX2(0,0,numDim)]), numNodes, numDim)) )
322             throw DataException(msgPrefix+"put(Nodes_Coordinates)");
323    
324       }
325    
326       // // // // // Elements // // // // //
327    
328       if (num_Elements>0) {
329    
330          // Elements_Id
331          if (! ( ids = dataFile.add_var("Elements_Id", ncInt, ncdims[3])) )
332             throw DataException(msgPrefix+"add_var(Elements_Id)");
333          int_ptr = &mesh->Elements->Id[0];
334          if (! (ids->put(int_ptr, num_Elements)) )
335             throw DataException(msgPrefix+"put(Elements_Id)");
336    
337          // Elements_Tag
338          if (! ( ids = dataFile.add_var("Elements_Tag", ncInt, ncdims[3])) )
339             throw DataException(msgPrefix+"add_var(Elements_Tag)");
340          int_ptr = &mesh->Elements->Tag[0];
341          if (! (ids->put(int_ptr, num_Elements)) )
342             throw DataException(msgPrefix+"put(Elements_Tag)");
343    
344          // Elements_Owner
345          if (! ( ids = dataFile.add_var("Elements_Owner", ncInt, ncdims[3])) )
346             throw DataException(msgPrefix+"add_var(Elements_Owner)");
347          int_ptr = &mesh->Elements->Owner[0];
348          if (! (ids->put(int_ptr, num_Elements)) )
349             throw DataException(msgPrefix+"put(Elements_Owner)");
350    
351          // Elements_Color
352          if (! ( ids = dataFile.add_var("Elements_Color", ncInt, ncdims[3])) )
353             throw DataException(msgPrefix+"add_var(Elements_Color)");
354          int_ptr = &mesh->Elements->Color[0];
355          if (! (ids->put(int_ptr, num_Elements)) )
356             throw DataException(msgPrefix+"put(Elements_Color)");
357    
358          // Elements_Nodes
359          if (! ( ids = dataFile.add_var("Elements_Nodes", ncInt, ncdims[3], ncdims[7]) ) )
360             throw DataException(msgPrefix+"add_var(Elements_Nodes)");
361          if (! (ids->put(&(mesh->Elements->Nodes[0]), num_Elements, num_Elements_numNodes)) )
362             throw DataException(msgPrefix+"put(Elements_Nodes)");
363    
364       }
365    
366       // // // // // Face_Elements // // // // //
367    
368       if (num_FaceElements>0) {
369    
370          // FaceElements_Id
371          if (! ( ids = dataFile.add_var("FaceElements_Id", ncInt, ncdims[4])) )
372             throw DataException(msgPrefix+"add_var(FaceElements_Id)");
373          int_ptr = &mesh->FaceElements->Id[0];
374          if (! (ids->put(int_ptr, num_FaceElements)) )
375             throw DataException(msgPrefix+"put(FaceElements_Id)");
376    
377          // FaceElements_Tag
378          if (! ( ids = dataFile.add_var("FaceElements_Tag", ncInt, ncdims[4])) )
379             throw DataException(msgPrefix+"add_var(FaceElements_Tag)");
380          int_ptr = &mesh->FaceElements->Tag[0];
381          if (! (ids->put(int_ptr, num_FaceElements)) )
382             throw DataException(msgPrefix+"put(FaceElements_Tag)");
383    
384          // FaceElements_Owner
385          if (! ( ids = dataFile.add_var("FaceElements_Owner", ncInt, ncdims[4])) )
386             throw DataException(msgPrefix+"add_var(FaceElements_Owner)");
387          int_ptr = &mesh->FaceElements->Owner[0];
388          if (! (ids->put(int_ptr, num_FaceElements)) )
389             throw DataException(msgPrefix+"put(FaceElements_Owner)");
390    
391          // FaceElements_Color
392          if (! ( ids = dataFile.add_var("FaceElements_Color", ncInt, ncdims[4])) )
393             throw DataException(msgPrefix+"add_var(FaceElements_Color)");
394          int_ptr = &mesh->FaceElements->Color[0];
395          if (! (ids->put(int_ptr, num_FaceElements)) )
396             throw DataException(msgPrefix+"put(FaceElements_Color)");
397    
398          // FaceElements_Nodes
399          if (! ( ids = dataFile.add_var("FaceElements_Nodes", ncInt, ncdims[4], ncdims[8]) ) )
400             throw DataException(msgPrefix+"add_var(FaceElements_Nodes)");
401          if (! (ids->put(&(mesh->FaceElements->Nodes[0]), num_FaceElements, num_FaceElements_numNodes)) )
402             throw DataException(msgPrefix+"put(FaceElements_Nodes)");
403    
404       }
405    
406       // // // // // Contact_Elements // // // // //
407    
408       if (num_ContactElements>0) {
409    
410          // ContactElements_Id
411          if (! ( ids = dataFile.add_var("ContactElements_Id", ncInt, ncdims[5])) )
412             throw DataException(msgPrefix+"add_var(ContactElements_Id)");
413          int_ptr = &mesh->ContactElements->Id[0];
414          if (! (ids->put(int_ptr, num_ContactElements)) )
415             throw DataException(msgPrefix+"put(ContactElements_Id)");
416    
417          // ContactElements_Tag
418          if (! ( ids = dataFile.add_var("ContactElements_Tag", ncInt, ncdims[5])) )
419             throw DataException(msgPrefix+"add_var(ContactElements_Tag)");
420          int_ptr = &mesh->ContactElements->Tag[0];
421          if (! (ids->put(int_ptr, num_ContactElements)) )
422             throw DataException(msgPrefix+"put(ContactElements_Tag)");
423    
424          // ContactElements_Owner
425          if (! ( ids = dataFile.add_var("ContactElements_Owner", ncInt, ncdims[5])) )
426             throw DataException(msgPrefix+"add_var(ContactElements_Owner)");
427          int_ptr = &mesh->ContactElements->Owner[0];
428          if (! (ids->put(int_ptr, num_ContactElements)) )
429             throw DataException(msgPrefix+"put(ContactElements_Owner)");
430    
431          // ContactElements_Color
432          if (! ( ids = dataFile.add_var("ContactElements_Color", ncInt, ncdims[5])) )
433             throw DataException(msgPrefix+"add_var(ContactElements_Color)");
434          int_ptr = &mesh->ContactElements->Color[0];
435          if (! (ids->put(int_ptr, num_ContactElements)) )
436             throw DataException(msgPrefix+"put(ContactElements_Color)");
437    
438          // ContactElements_Nodes
439          if (! ( ids = dataFile.add_var("ContactElements_Nodes", ncInt, ncdims[5], ncdims[9]) ) )
440             throw DataException(msgPrefix+"add_var(ContactElements_Nodes)");
441          if (! (ids->put(&(mesh->ContactElements->Nodes[0]), num_ContactElements, num_ContactElements_numNodes)) )
442             throw DataException(msgPrefix+"put(ContactElements_Nodes)");
443    
444       }
445    
446       // // // // // Points // // // // //
447    
448       if (num_Points>0) {
449    
450          fprintf(stderr, "\n\n\nWARNING: MeshAdapter::dump has not been tested with Point elements\n\n\n");
451    
452          // Points_Id
453          if (! ( ids = dataFile.add_var("Points_Id", ncInt, ncdims[6])) )
454             throw DataException(msgPrefix+"add_var(Points_Id)");
455          int_ptr = &mesh->Points->Id[0];
456          if (! (ids->put(int_ptr, num_Points)) )
457             throw DataException(msgPrefix+"put(Points_Id)");
458    
459          // Points_Tag
460          if (! ( ids = dataFile.add_var("Points_Tag", ncInt, ncdims[6])) )
461             throw DataException(msgPrefix+"add_var(Points_Tag)");
462          int_ptr = &mesh->Points->Tag[0];
463          if (! (ids->put(int_ptr, num_Points)) )
464             throw DataException(msgPrefix+"put(Points_Tag)");
465    
466          // Points_Owner
467          if (! ( ids = dataFile.add_var("Points_Owner", ncInt, ncdims[6])) )
468             throw DataException(msgPrefix+"add_var(Points_Owner)");
469          int_ptr = &mesh->Points->Owner[0];
470          if (! (ids->put(int_ptr, num_Points)) )
471             throw DataException(msgPrefix+"put(Points_Owner)");
472    
473          // Points_Color
474          if (! ( ids = dataFile.add_var("Points_Color", ncInt, ncdims[6])) )
475             throw DataException(msgPrefix+"add_var(Points_Color)");
476          int_ptr = &mesh->Points->Color[0];
477          if (! (ids->put(int_ptr, num_Points)) )
478             throw DataException(msgPrefix+"put(Points_Color)");
479    
480          // Points_Nodes
481          // mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]]
482          if (! ( ids = dataFile.add_var("Points_Nodes", ncInt, ncdims[6]) ) )
483             throw DataException(msgPrefix+"add_var(Points_Nodes)");
484          if (! (ids->put(&(mesh->Points->Nodes[0]), num_Points)) )
485             throw DataException(msgPrefix+"put(Points_Nodes)");
486    
487       }
488    
489       // // // // // TagMap // // // // //
490    
491       if (num_Tags>0) {
492    
493          // Temp storage to gather node IDs
494          int *Tags_keys = TMPMEMALLOC(num_Tags, int);
495          char name_temp[4096];
496    
497          /* Copy tag data into temp arrays */
498          tag_map = mesh->TagMap;
499          if (tag_map) {
500             int i = 0;
501             while (tag_map) {
502                Tags_keys[i++] = tag_map->tag_key;
503                tag_map=tag_map->next;
504             }
505          }
506    
507          // Tags_keys
508          if (! ( ids = dataFile.add_var("Tags_keys", ncInt, ncdims[10])) )
509             throw DataException(msgPrefix+"add_var(Tags_keys)");
510          int_ptr = &Tags_keys[0];
511          if (! (ids->put(int_ptr, num_Tags)) )
512             throw DataException(msgPrefix+"put(Tags_keys)");
513    
514          // Tags_names_*
515          // This is an array of strings, it should be stored as an array but
516          // instead I have hacked in one attribute per string because the NetCDF
517          // manual doesn't tell how to do an array of strings
518          tag_map = mesh->TagMap;
519          if (tag_map) {
520             int i = 0;
521             while (tag_map) {
522                sprintf(name_temp, "Tags_name_%d", i);
523                if (!dataFile.add_att(name_temp, tag_map->name) )
524                   throw DataException(msgPrefix+"add_att(Tags_names_XX)");
525                tag_map=tag_map->next;
526                i++;
527             }
528          }
529    
530          TMPMEMFREE(Tags_keys);
531       }
532    
533    /* Send token to next MPI process so he can take his turn */
534    #ifdef ESYS_MPI
535       if (mpi_rank<mpi_size-1) MPI_Send(&num_Tags, 0, MPI_INT, mpi_rank+1, 81800, mesh->MPIInfo->comm);
536    #endif
537    
538       // NetCDF file is closed by destructor of NcFile object
539    
540    #else
541       Finley_setError(IO_ERROR, "MeshAdapter::dump: not configured with NetCDF. Please contact your installation manager.");
542    #endif  /* USE_NETCDF */
543       checkFinleyError();
544    }
545    
546  string MeshAdapter::getDescription() const  string MeshAdapter::getDescription() const
547  {  {
548    return "FinleyMesh";     return "FinleyMesh";
549  }  }
550    
551  string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const  string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const
552  {  {
553    FunctionSpaceNamesMapType::iterator loc;     FunctionSpaceNamesMapType::iterator loc;
554    loc=m_functionSpaceTypeNames.find(functionSpaceType);     loc=m_functionSpaceTypeNames.find(functionSpaceType);
555    if (loc==m_functionSpaceTypeNames.end()) {     if (loc==m_functionSpaceTypeNames.end()) {
556      return "Invalid function space type code.";        return "Invalid function space type code.";
557    } else {     } else {
558      return loc->second;        return loc->second;
559    }     }
560  }  }
561    
562  bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const  bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const
563  {  {
564    FunctionSpaceNamesMapType::iterator loc;     FunctionSpaceNamesMapType::iterator loc;
565    loc=m_functionSpaceTypeNames.find(functionSpaceType);     loc=m_functionSpaceTypeNames.find(functionSpaceType);
566    return (loc!=m_functionSpaceTypeNames.end());     return (loc!=m_functionSpaceTypeNames.end());
567  }  }
568    
569  void MeshAdapter::setFunctionSpaceTypeNames()  void MeshAdapter::setFunctionSpaceTypeNames()
570  {  {
571    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
572      (FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom"));     (FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom"));
573    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
574      (FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom"));     (FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom"));
575    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
576      (FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes"));     (FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes"));
577    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
578      (FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements"));     (FunctionSpaceNamesMapType::value_type(ReducedNodes,"Finley_Reduced_Nodes"));
579    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
580      (FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements"));     (FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements"));
581    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
582      (FunctionSpaceNamesMapType::value_type(Points,"Finley_Points"));     (FunctionSpaceNamesMapType::value_type(ReducedElements,"Finley_Reduced_Elements"));
583    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
584      (FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0"));     (FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements"));
585    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
586      (FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1"));     (FunctionSpaceNamesMapType::value_type(ReducedFaceElements,"Finley_Reduced_Face_Elements"));
587       m_functionSpaceTypeNames.insert
588       (FunctionSpaceNamesMapType::value_type(Points,"Finley_Points"));
589       m_functionSpaceTypeNames.insert
590       (FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0"));
591       m_functionSpaceTypeNames.insert
592       (FunctionSpaceNamesMapType::value_type(ReducedContactElementsZero,"Finley_Reduced_Contact_Elements_0"));
593       m_functionSpaceTypeNames.insert
594       (FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1"));
595       m_functionSpaceTypeNames.insert
596       (FunctionSpaceNamesMapType::value_type(ReducedContactElementsOne,"Finley_Reduced_Contact_Elements_1"));
597  }  }
598    
599  int MeshAdapter::getContinuousFunctionCode() const  int MeshAdapter::getContinuousFunctionCode() const
600  {  {
601    return Nodes;     return Nodes;
602    }
603    int MeshAdapter::getReducedContinuousFunctionCode() const
604    {
605       return ReducedNodes;
606  }  }
607    
608  int MeshAdapter::getFunctionCode() const  int MeshAdapter::getFunctionCode() const
609  {  {
610    return Elements;     return Elements;
611    }
612    int MeshAdapter::getReducedFunctionCode() const
613    {
614       return ReducedElements;
615  }  }
616    
617  int MeshAdapter::getFunctionOnBoundaryCode() const  int MeshAdapter::getFunctionOnBoundaryCode() const
618  {  {
619    return FaceElements;     return FaceElements;
620    }
621    int MeshAdapter::getReducedFunctionOnBoundaryCode() const
622    {
623       return ReducedFaceElements;
624  }  }
625    
626  int MeshAdapter::getFunctionOnContactZeroCode() const  int MeshAdapter::getFunctionOnContactZeroCode() const
627  {  {
628    return ContactElementsZero;     return ContactElementsZero;
629  }  }
630    int MeshAdapter::getReducedFunctionOnContactZeroCode() const
631    {
632       return ReducedContactElementsZero;
633    }
634    
635  int MeshAdapter::getFunctionOnContactOneCode() const  int MeshAdapter::getFunctionOnContactOneCode() const
636  {  {
637    return ContactElementsOne;     return ContactElementsOne;
638    }
639    int MeshAdapter::getReducedFunctionOnContactOneCode() const
640    {
641       return ReducedContactElementsOne;
642  }  }
643    
644  int MeshAdapter::getSolutionCode() const  int MeshAdapter::getSolutionCode() const
645  {  {
646    return DegreesOfFreedom;     return DegreesOfFreedom;
647  }  }
648    
649  int MeshAdapter::getReducedSolutionCode() const  int MeshAdapter::getReducedSolutionCode() const
650  {  {
651    return ReducedDegreesOfFreedom;     return ReducedDegreesOfFreedom;
 }  
 int MeshAdapter::getDiracDeltaFunctionCode() const  
 {  
   return Points;  
652  }  }
653    
654  int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const  int MeshAdapter::getDiracDeltaFunctionsCode() const
655  {  {
656    //     return Points;
   // It is assumed the sampleNo has been checked  
   // before calling this function.  
   int* tagList;  
   int numTags;  
   getTagList(functionSpaceType, &tagList, &numTags);  
   return tagList[sampleNo];  
657  }  }
658    
659  //  //
660  // returns a pointer to the tag list of samples of functionSpaceType  // return the spatial dimension of the Mesh:
661  //  //
662  void MeshAdapter::getTagList(int functionSpaceType, int** tagList,  int MeshAdapter::getDim() const
                  int* numTags) const  
663  {  {
664    *tagList=NULL;     Finley_Mesh* mesh=m_finleyMesh.get();
665    *numTags=0;     int numDim=Finley_Mesh_getDim(mesh);
666    Finley_Mesh* mesh=m_finleyMesh.get();     checkFinleyError();
667    switch (functionSpaceType) {     return numDim;
   case(Nodes):  
     if (mesh->Nodes!=NULL) {  
       *tagList=mesh->Nodes->Tag;  
       *numTags=mesh->Nodes->numNodes;  
     }  
     break;  
   case(Elements):  
     if (mesh->Elements!=NULL) {  
       *tagList=mesh->Elements->Tag;  
       *numTags=mesh->Elements->numElements;  
     }  
     break;  
   case(FaceElements):  
     if (mesh->FaceElements!=NULL) {  
       *tagList=mesh->FaceElements->Tag;  
       *numTags=mesh->FaceElements->numElements;  
     }  
     break;  
   case(Points):  
     if (mesh->Points!=NULL) {  
       *tagList=mesh->Points->Tag;  
       *numTags=mesh->Points->numElements;  
     }  
     break;  
   case(ContactElementsZero):  
     if (mesh->ContactElements!=NULL) {  
       *tagList=mesh->ContactElements->Tag;  
       *numTags=mesh->ContactElements->numElements;  
     }  
     break;  
   case(ContactElementsOne):  
     if (mesh->ContactElements!=NULL) {  
       *tagList=mesh->ContactElements->Tag;  
       *numTags=mesh->ContactElements->numElements;  
     }  
     break;  
   case(DegreesOfFreedom):  
     if (mesh->Nodes!=NULL) {  
       *tagList=NULL;  
       *numTags=0;  
     }  
     break;  
   case(ReducedDegreesOfFreedom):  
     if (mesh->Nodes!=NULL) {  
       *tagList=NULL;  
       *numTags=0;  
     }  
     break;  
   default:  
     stringstream temp;  
     temp << "Error - Invalid function space type: "  
      << functionSpaceType << " for domain: " << getDescription();  
     throw FinleyAdapterException(temp.str());  
     break;  
   }  
   return;  
668  }  }
669    
670  //  //
671  // return the spatial dimension of the Mesh:  // Return the number of data points summed across all MPI processes
672  //  //
673  int MeshAdapter::getDim() const  int MeshAdapter::getNumDataPointsGlobal() const
674  {  {
675    int numDim=Finley_Mesh_getDim(m_finleyMesh.get());     return Finley_NodeFile_getGlobalNumNodes(m_finleyMesh.get()->Nodes);
   checkFinleyError();  
   return numDim;  
676  }  }
677    
678  //  //
679  // return the number of data points per sample and the number of samples  // return the number of data points per sample and the number of samples
680  // needed to represent data on a parts of the mesh.  // needed to represent data on a parts of the mesh.
# Line 278  pair<int,int> MeshAdapter::getDataShape( Line 685  pair<int,int> MeshAdapter::getDataShape(
685     int numSamples=0;     int numSamples=0;
686     Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
687     switch (functionSpaceCode) {     switch (functionSpaceCode) {
688        case(Nodes):     case(Nodes):
689             numDataPointsPerSample=1;     numDataPointsPerSample=1;
690             if (mesh->Nodes!=NULL) numSamples=mesh->Nodes->numNodes;     numSamples=Finley_NodeFile_getNumNodes(mesh->Nodes);
691             break;     break;
692        case(Elements):     case(ReducedNodes):
693             if (mesh->Elements!=NULL) {     numDataPointsPerSample=1;
694               numSamples=mesh->Elements->numElements;     numSamples=Finley_NodeFile_getNumReducedNodes(mesh->Nodes);
695               numDataPointsPerSample=mesh->Elements->ReferenceElement->numQuadNodes;     break;
696             }     case(Elements):
697             break;     if (mesh->Elements!=NULL) {
698        case(FaceElements):        numSamples=mesh->Elements->numElements;
699             if (mesh->FaceElements!=NULL) {        numDataPointsPerSample=mesh->Elements->referenceElementSet->referenceElement->Parametrization->numQuadNodes;
700                  numDataPointsPerSample=mesh->FaceElements->ReferenceElement->numQuadNodes;     }
701                  numSamples=mesh->FaceElements->numElements;     break;
702             }     case(ReducedElements):
703             break;     if (mesh->Elements!=NULL) {
704        case(Points):        numSamples=mesh->Elements->numElements;
705             if (mesh->Points!=NULL) {        numDataPointsPerSample=mesh->Elements->referenceElementSet->referenceElementReducedQuadrature->Parametrization->numQuadNodes;
706               numDataPointsPerSample=1;     }
707               numSamples=mesh->Points->numElements;     break;
708             }     case(FaceElements):
709             break;     if (mesh->FaceElements!=NULL) {
710        case(ContactElementsZero):        numDataPointsPerSample=mesh->FaceElements->referenceElementSet->referenceElement->Parametrization->numQuadNodes;
711             if (mesh->ContactElements!=NULL) {        numSamples=mesh->FaceElements->numElements;
712               numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;     }
713               numSamples=mesh->ContactElements->numElements;     break;
714             }     case(ReducedFaceElements):
715             break;     if (mesh->FaceElements!=NULL) {
716        case(ContactElementsOne):        numDataPointsPerSample=mesh->FaceElements->referenceElementSet->referenceElementReducedQuadrature->Parametrization->numQuadNodes;
717             if (mesh->ContactElements!=NULL) {        numSamples=mesh->FaceElements->numElements;
718               numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;     }
719               numSamples=mesh->ContactElements->numElements;     break;
720             }     case(Points):
721             break;     if (mesh->Points!=NULL) {
722        case(DegreesOfFreedom):        numDataPointsPerSample=1;
723             if (mesh->Nodes!=NULL) {        numSamples=mesh->Points->numElements;
724               numDataPointsPerSample=1;     }
725               numSamples=mesh->Nodes->numDegreesOfFreedom;     break;
726             }     case(ContactElementsZero):
727             break;     if (mesh->ContactElements!=NULL) {
728        case(ReducedDegreesOfFreedom):        numDataPointsPerSample=mesh->ContactElements->referenceElementSet->referenceElement->Parametrization->numQuadNodes;
729             if (mesh->Nodes!=NULL) {        numSamples=mesh->ContactElements->numElements;
730               numDataPointsPerSample=1;     }
731               numSamples=mesh->Nodes->reducedNumDegreesOfFreedom;     break;
732             }     case(ReducedContactElementsZero):
733             break;     if (mesh->ContactElements!=NULL) {
734        default:        numDataPointsPerSample=mesh->ContactElements->referenceElementSet->referenceElementReducedQuadrature->Parametrization->numQuadNodes;
735          stringstream temp;        numSamples=mesh->ContactElements->numElements;
736          temp << "Error - Invalid function space type: "     }
737           << functionSpaceCode << " for domain: " << getDescription();     break;
738          throw FinleyAdapterException(temp.str());     case(ContactElementsOne):
739          break;     if (mesh->ContactElements!=NULL) {
740        }        numDataPointsPerSample=mesh->ContactElements->referenceElementSet->referenceElement->Parametrization->numQuadNodes;
741        return pair<int,int>(numDataPointsPerSample,numSamples);        numSamples=mesh->ContactElements->numElements;
742       }
743       break;
744       case(ReducedContactElementsOne):
745       if (mesh->ContactElements!=NULL) {
746          numDataPointsPerSample=mesh->ContactElements->referenceElementSet->referenceElementReducedQuadrature->Parametrization->numQuadNodes;
747          numSamples=mesh->ContactElements->numElements;
748       }
749       break;
750       case(DegreesOfFreedom):
751       if (mesh->Nodes!=NULL) {
752          numDataPointsPerSample=1;
753          numSamples=Finley_NodeFile_getNumDegreesOfFreedom(mesh->Nodes);
754       }
755       break;
756       case(ReducedDegreesOfFreedom):
757       if (mesh->Nodes!=NULL) {
758          numDataPointsPerSample=1;
759          numSamples=Finley_NodeFile_getNumReducedDegreesOfFreedom(mesh->Nodes);
760       }
761       break;
762       default:
763          stringstream temp;
764          temp << "Error - Invalid function space type: " << functionSpaceCode << " for domain: " << getDescription();
765          throw FinleyAdapterException(temp.str());
766          break;
767       }
768       return pair<int,int>(numDataPointsPerSample,numSamples);
769  }  }
770    
771  //  //
772  // adds linear PDE of second order into a given stiffness matrix and right hand side:  // adds linear PDE of second order into a given stiffness matrix and right hand side:
773  //  //
774  void MeshAdapter::addPDEToSystem(  void MeshAdapter::addPDEToSystem(
775                       SystemMatrixAdapter& mat, Data& rhs,                                   AbstractSystemMatrix& mat, escript::Data& rhs,
776                       const Data& A, const Data& B, const Data& C,const  Data& D,const  Data& X,const  Data& Y,                                   const escript::Data& A, const escript::Data& B, const escript::Data& C,const  escript::Data& D,const  escript::Data& X,const  escript::Data& Y,
777                       const Data& d, const Data& y,                                   const escript::Data& d, const escript::Data& y,
778                       const Data& d_contact,const Data& y_contact) const                                   const escript::Data& d_contact,const escript::Data& y_contact,
779  {                                   const escript::Data& d_dirac,const escript::Data& y_dirac) const
780     Finley_Mesh* mesh=m_finleyMesh.get();  {
781     Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,mat.getFinley_SystemMatrix(),&(rhs.getDataC()),     SystemMatrixAdapter* smat=dynamic_cast<SystemMatrixAdapter*>(&mat);
782                         &(A.getDataC()),&(B.getDataC()),&(C.getDataC()),&(D.getDataC()),&(X.getDataC()),&(Y.getDataC()));     if (smat==0)
783     checkFinleyError();     {
784     Finley_Assemble_RobinCondition(mesh->Nodes,mesh->FaceElements,      throw FinleyAdapterException("finley only supports Paso system matrices.");
785                    mat.getFinley_SystemMatrix(),     }
786                    &(rhs.getDataC()),     escriptDataC _rhs=rhs.getDataC();
787                                    &(d.getDataC()),&(y.getDataC()),     escriptDataC _A  =A.getDataC();
788                                    Finley_Assemble_handelShapeMissMatch_Mean_out);     escriptDataC _B=B.getDataC();
789     checkFinleyError();     escriptDataC _C=C.getDataC();
790     Finley_Assemble_RobinCondition(mesh->Nodes,mesh->FaceElements,     escriptDataC _D=D.getDataC();
791                    mat.getFinley_SystemMatrix(),     escriptDataC _X=X.getDataC();
792                    &(rhs.getDataC()),     escriptDataC _Y=Y.getDataC();
793                                    &(d_contact.getDataC()),     escriptDataC _d=d.getDataC();
794                    &(y_contact.getDataC()),     escriptDataC _y=y.getDataC();
795                                    Finley_Assemble_handelShapeMissMatch_Step_out);     escriptDataC _d_contact=d_contact.getDataC();
796       escriptDataC _y_contact=y_contact.getDataC();
797       escriptDataC _d_dirac=d_dirac.getDataC();
798       escriptDataC _y_dirac=y_dirac.getDataC();
799    
800       Finley_Mesh* mesh=m_finleyMesh.get();
801    
802       Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,smat->getPaso_SystemMatrix(), &_rhs, &_A, &_B, &_C, &_D, &_X, &_Y );
803       checkFinleyError();
804    
805       Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, smat->getPaso_SystemMatrix(), &_rhs, 0, 0, 0, &_d, 0, &_y );
806       checkFinleyError();
807    
808       Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, smat->getPaso_SystemMatrix(), &_rhs , 0, 0, 0, &_d_contact, 0, &_y_contact );
809       checkFinleyError();
810    
811        Finley_Assemble_PDE(mesh->Nodes,mesh->Points, smat->getPaso_SystemMatrix(), &_rhs , 0, 0, 0, &_d_dirac, 0, &_y_dirac );
812       checkFinleyError();
813    }
814    
815    void  MeshAdapter::addPDEToLumpedSystem(
816                                            escript::Data& mat,
817                                            const escript::Data& D,
818                                            const escript::Data& d,
819                                            const escript::Data& d_dirac,
820                                            const bool useHRZ) const
821    {
822       escriptDataC _mat=mat.getDataC();
823       escriptDataC _D=D.getDataC();
824       escriptDataC _d=d.getDataC();
825       escriptDataC _d_dirac=d_dirac.getDataC();
826    
827       Finley_Mesh* mesh=m_finleyMesh.get();
828    
829       Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->Elements,&_mat, &_D, useHRZ);
830     checkFinleyError();     checkFinleyError();
831      
832       Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->FaceElements,&_mat, &_d, useHRZ);
833       checkFinleyError();
834    
835       Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->Points,&_mat, &_d_dirac, useHRZ);
836       checkFinleyError();
837    
838  }  }
839    
840    
841  //  //
842  // adds linear PDE of second order into the right hand side only  // adds linear PDE of second order into the right hand side only
843  //  //
844  void MeshAdapter::addPDEToRHS( Data& rhs,  void MeshAdapter::addPDEToRHS( escript::Data& rhs, const  escript::Data& X,const  escript::Data& Y, const escript::Data& y, const escript::Data& y_contact,  const escript::Data& y_dirac) const
                      const  Data& X,const  Data& Y, const Data& y, const Data& y_contact) const  
845  {  {
846     Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
847     Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,0,&(rhs.getDataC()),0,0,0,0,&(X.getDataC()),&(Y.getDataC()));  
848       escriptDataC _rhs=rhs.getDataC();
849       escriptDataC _X=X.getDataC();
850       escriptDataC _Y=Y.getDataC();
851       escriptDataC _y=y.getDataC();
852       escriptDataC _y_contact=y_contact.getDataC();
853       escriptDataC _y_dirac=y_dirac.getDataC();
854    
855       Finley_Assemble_PDE(mesh->Nodes,mesh->Elements, 0, &_rhs, 0, 0, 0, 0, &_X, &_Y );
856     checkFinleyError();     checkFinleyError();
857     Finley_Assemble_RobinCondition(mesh->Nodes,mesh->FaceElements,0,&(rhs.getDataC()),0,&(y.getDataC()),  
858                                    Finley_Assemble_handelShapeMissMatch_Mean_out);     Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, 0, &_rhs, 0, 0, 0, 0, 0, &_y );
 // cout << "Calling :addPDEToRHS." << endl;  
859     checkFinleyError();     checkFinleyError();
860     Finley_Assemble_RobinCondition(mesh->Nodes,mesh->FaceElements,0,&(rhs.getDataC()),0,&(y_contact.getDataC()),  
861                                    Finley_Assemble_handelShapeMissMatch_Step_out);     Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, 0, &_rhs , 0, 0, 0, 0, 0, &_y_contact );
 // cout << "Calling :addPDEToRHS." << endl;  
862     checkFinleyError();     checkFinleyError();
863    
864       Finley_Assemble_PDE(mesh->Nodes,mesh->Points, 0, &_rhs , 0, 0, 0, 0, 0, &_y_dirac );
865       checkFinleyError();
866    
867  }  }
868  //  //
869    // adds PDE of second order into a transport problem
870    //
871    void MeshAdapter::addPDEToTransportProblem(
872                                               AbstractTransportProblem& tp, escript::Data& source, const escript::Data& M,
873                                               const escript::Data& A, const escript::Data& B, const escript::Data& C,
874                                               const  escript::Data& D,const  escript::Data& X,const  escript::Data& Y,
875                                               const escript::Data& d, const escript::Data& y,
876                                               const escript::Data& d_contact,const escript::Data& y_contact,
877                                               const escript::Data& d_dirac, const escript::Data& y_dirac) const
878    {
879       TransportProblemAdapter* tpa=dynamic_cast<TransportProblemAdapter*>(&tp);
880       if (tpa==0)
881       {
882        throw FinleyAdapterException("finley only supports Paso transport problems.");
883       }
884    
885    
886       DataTypes::ShapeType shape;
887       source.expand();
888       escriptDataC _source=source.getDataC();
889       escriptDataC _M=M.getDataC();
890       escriptDataC _A=A.getDataC();
891       escriptDataC _B=B.getDataC();
892       escriptDataC _C=C.getDataC();
893       escriptDataC _D=D.getDataC();
894       escriptDataC _X=X.getDataC();
895       escriptDataC _Y=Y.getDataC();
896       escriptDataC _d=d.getDataC();
897       escriptDataC _y=y.getDataC();
898       escriptDataC _d_contact=d_contact.getDataC();
899       escriptDataC _y_contact=y_contact.getDataC();
900       escriptDataC _d_dirac=d_dirac.getDataC();
901       escriptDataC _y_dirac=y_dirac.getDataC();
902    
903    
904       Finley_Mesh* mesh=m_finleyMesh.get();
905       Paso_TransportProblem* _tp = tpa->getPaso_TransportProblem();
906    
907       Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->mass_matrix, &_source, 0, 0, 0, &_M, 0, 0 );
908       checkFinleyError();
909    
910       Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->transport_matrix, &_source, &_A, &_B, &_C, &_D, &_X, &_Y );
911       checkFinleyError();
912    
913       Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, _tp->transport_matrix, &_source, 0, 0, 0, &_d, 0, &_y );
914       checkFinleyError();
915    
916       Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, _tp->transport_matrix, &_source , 0, 0, 0, &_d_contact, 0, &_y_contact );
917       checkFinleyError();
918    
919       Finley_Assemble_PDE(mesh->Nodes,mesh->Points, _tp->transport_matrix, &_source , 0, 0, 0, &_d_dirac, 0, &_y_dirac );
920       checkFinleyError();
921    
922    }
923    
924    //
925  // interpolates data between different function spaces:  // interpolates data between different function spaces:
926  //  //
927  void MeshAdapter::interpolateOnDomain(Data& target,const Data& in) const  void MeshAdapter::interpolateOnDomain(escript::Data& target,const escript::Data& in) const
928  {  {
929    const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(in.getFunctionSpace().getDomain());     const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(*(in.getFunctionSpace().getDomain()));
930    const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());     const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(*(target.getFunctionSpace().getDomain()));
931    if (inDomain!=*this)     if (inDomain!=*this)  
932       throw FinleyAdapterException("Error - Illegal domain of interpolant.");        throw FinleyAdapterException("Error - Illegal domain of interpolant.");
933    if (targetDomain!=*this)     if (targetDomain!=*this)
934       throw FinleyAdapterException("Error - Illegal domain of interpolation target.");        throw FinleyAdapterException("Error - Illegal domain of interpolation target.");
935    
936    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
937    switch(in.getFunctionSpace().getTypeCode()) {     escriptDataC _target=target.getDataC();
938       case(Nodes):     escriptDataC _in=in.getDataC();
939          switch(target.getFunctionSpace().getTypeCode()) {     switch(in.getFunctionSpace().getTypeCode()) {
940             case(Nodes):     case(Nodes):
941             case(ReducedDegreesOfFreedom):        switch(target.getFunctionSpace().getTypeCode()) {
942             case(DegreesOfFreedom):        case(Nodes):
943                 Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC()));        case(ReducedNodes):
944                 break;        case(DegreesOfFreedom):
945             case(Elements):        case(ReducedDegreesOfFreedom):
946                 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC()));        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
947                 break;        break;
948             case(FaceElements):        case(Elements):
949                 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC()));        case(ReducedElements):
950                 break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
951             case(Points):        break;
952                 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC()));        case(FaceElements):
953                 break;        case(ReducedFaceElements):
954             case(ContactElementsZero):        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
955                 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC()));        break;
956                 break;        case(Points):
957             case(ContactElementsOne):        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
958                 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC()));        break;
959                 break;        case(ContactElementsZero):
960             default:        case(ReducedContactElementsZero):
961                 Finley_ErrorCode=TYPE_ERROR;        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
962                 sprintf(Finley_ErrorMsg,"Interpolation on Domain: Finley does not know anything about function space type %d",target.getFunctionSpace().getTypeCode());        break;
963                 break;        case(ContactElementsOne):
964          }        case(ReducedContactElementsOne):
965          break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
966       case(Elements):        break;
967          if (target.getFunctionSpace().getTypeCode()==Elements) {        default:
968             Finley_Assemble_CopyElementData(mesh->Elements,&(target.getDataC()),&(in.getDataC()));           stringstream temp;
969          } else {           temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
970             Finley_ErrorCode=TYPE_ERROR;           throw FinleyAdapterException(temp.str());
971             sprintf(Finley_ErrorMsg,"No interpolation with data on elements possible.");           break;
972          }        }
973          break;        break;
974       case(FaceElements):     case(ReducedNodes):
975          if (target.getFunctionSpace().getTypeCode()==FaceElements) {        switch(target.getFunctionSpace().getTypeCode()) {
976             Finley_Assemble_CopyElementData(mesh->FaceElements,&(target.getDataC()),&(in.getDataC()));        case(Nodes):
977          } else {        case(ReducedNodes):
978             Finley_ErrorCode=TYPE_ERROR;        case(DegreesOfFreedom):
979             sprintf(Finley_ErrorMsg,"No interpolation with data on face elements possible.");        case(ReducedDegreesOfFreedom):
980             break;        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
981         }        break;
982       case(Points):        case(Elements):
983          if (target.getFunctionSpace().getTypeCode()==Points) {        case(ReducedElements):
984             Finley_Assemble_CopyElementData(mesh->Points,&(target.getDataC()),&(in.getDataC()));        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
985          } else {        break;
986             Finley_ErrorCode=TYPE_ERROR;        case(FaceElements):
987             sprintf(Finley_ErrorMsg,"No interpolation with data on points possible.");        case(ReducedFaceElements):
988             break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
989          }        break;
990          break;        case(Points):
991       case(ContactElementsZero):        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
992       case(ContactElementsOne):        break;
993          if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {        case(ContactElementsZero):
994             Finley_Assemble_CopyElementData(mesh->ContactElements,&(target.getDataC()),&(in.getDataC()));        case(ReducedContactElementsZero):
995          } else {        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
996             Finley_ErrorCode=TYPE_ERROR;        break;
997             sprintf(Finley_ErrorMsg,"No interpolation with data on contact elements possible.");        case(ContactElementsOne):
998             break;        case(ReducedContactElementsOne):
999          }        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1000          break;        break;
1001       case(DegreesOfFreedom):        default:
1002          switch(target.getFunctionSpace().getTypeCode()) {           stringstream temp;
1003             case(ReducedDegreesOfFreedom):           temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1004             case(DegreesOfFreedom):           throw FinleyAdapterException(temp.str());
1005             case(Nodes):           break;
1006                Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC()));        }
1007                break;        break;
1008             case(Elements):     case(Elements):
1009                Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC()));        if (target.getFunctionSpace().getTypeCode()==Elements) {
1010                break;           Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
1011             case(FaceElements):        } else if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
1012                Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC()));           Finley_Assemble_AverageElementData(mesh->Elements,&_target,&_in);
1013                break;        } else {
1014             case(Points):           throw FinleyAdapterException("Error - No interpolation with data on elements possible.");
1015                Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC()));        }
1016                break;        break;
1017             case(ContactElementsZero):     case(ReducedElements):
1018             case(ContactElementsOne):        if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
1019                Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC()));           Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
1020               break;        } else {
1021             default:           throw FinleyAdapterException("Error - No interpolation with data on elements with reduced integration order possible.");
1022               Finley_ErrorCode=TYPE_ERROR;        }
1023               sprintf(Finley_ErrorMsg,"Interpolation On Domain: Finley does not know anything about function space type %d",target.getFunctionSpace().getTypeCode());        break;
1024               break;     case(FaceElements):
1025          }        if (target.getFunctionSpace().getTypeCode()==FaceElements) {
1026          break;           Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
1027       case(ReducedDegreesOfFreedom):        } else if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
1028         switch(target.getFunctionSpace().getTypeCode()) {           Finley_Assemble_AverageElementData(mesh->FaceElements,&_target,&_in);
1029            case(ReducedDegreesOfFreedom):        } else {
1030            case(Nodes):           throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");
1031               Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC()));        }
1032               break;        break;
1033            case(Elements):     case(ReducedFaceElements):
1034               Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC()));        if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
1035               break;           Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
1036            case(FaceElements):        } else {
1037               Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC()));           throw FinleyAdapterException("Error - No interpolation with data on face elements with reduced integration order possible.");
1038               break;        }
1039            case(Points):        break;
1040               Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC()));     case(Points):
1041               break;        if (target.getFunctionSpace().getTypeCode()==Points) {
1042            case(ContactElementsZero):           Finley_Assemble_CopyElementData(mesh->Points,&_target,&_in);
1043            case(ContactElementsOne):        } else {
1044               Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC()));           throw FinleyAdapterException("Error - No interpolation with data on points possible.");
1045               break;        }
1046            case(DegreesOfFreedom):        break;
1047               Finley_ErrorCode=TYPE_ERROR;     case(ContactElementsZero):
1048               sprintf(Finley_ErrorMsg,"Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");     case(ContactElementsOne):
1049               break;        if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {
1050            default:           Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
1051               Finley_ErrorCode=TYPE_ERROR;        } else if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
1052               sprintf(Finley_ErrorMsg,"Interpolation On Domain: Finley does not know anything about function space type %d",target.getFunctionSpace().getTypeCode());           Finley_Assemble_AverageElementData(mesh->ContactElements,&_target,&_in);
1053               break;        } else {
1054         }           throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");
1055         break;        }
1056       default:        break;
1057          Finley_ErrorCode=TYPE_ERROR;     case(ReducedContactElementsZero):
1058          sprintf(Finley_ErrorMsg,"Interpolation On Domain: Finley does not know anything about function space type %d",in.getFunctionSpace().getTypeCode());     case(ReducedContactElementsOne):
1059          break;        if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
1060    }           Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
1061    checkFinleyError();        } else {
1062             throw FinleyAdapterException("Error - No interpolation with data on contact elements with reduced integration order possible.");
1063          }
1064          break;
1065       case(DegreesOfFreedom):      
1066          switch(target.getFunctionSpace().getTypeCode()) {
1067          case(ReducedDegreesOfFreedom):
1068          case(DegreesOfFreedom):
1069          Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1070          break;
1071      
1072          case(Nodes):
1073          case(ReducedNodes):
1074          if (getMPISize()>1) {
1075             escript::Data temp=escript::Data(in);
1076             temp.expand();
1077             escriptDataC _in2 = temp.getDataC();
1078             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1079          } else {
1080             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1081          }
1082          break;
1083          case(Elements):
1084          case(ReducedElements):
1085          if (getMPISize()>1) {
1086             escript::Data temp=escript::Data( in,  continuousFunction(*this) );
1087             escriptDataC _in2 = temp.getDataC();
1088             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1089          } else {
1090             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1091          }
1092          break;
1093          case(FaceElements):
1094          case(ReducedFaceElements):
1095          if (getMPISize()>1) {
1096             escript::Data temp=escript::Data( in,  continuousFunction(*this) );
1097             escriptDataC _in2 = temp.getDataC();
1098             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1099      
1100          } else {
1101             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1102          }
1103          break;
1104          case(Points):
1105          if (getMPISize()>1) {
1106             //escript::Data temp=escript::Data( in,  continuousFunction(*this) );
1107             //escriptDataC _in2 = temp.getDataC();
1108          } else {
1109             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1110          }
1111          break;
1112          case(ContactElementsZero):
1113          case(ContactElementsOne):
1114          case(ReducedContactElementsZero):
1115          case(ReducedContactElementsOne):
1116          if (getMPISize()>1) {
1117             escript::Data temp=escript::Data( in,  continuousFunction(*this) );
1118             escriptDataC _in2 = temp.getDataC();
1119             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1120          } else {
1121             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1122          }
1123          break;
1124          default:
1125             stringstream temp;
1126             temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1127             throw FinleyAdapterException(temp.str());
1128             break;
1129          }
1130          break;
1131       case(ReducedDegreesOfFreedom):
1132          switch(target.getFunctionSpace().getTypeCode()) {
1133          case(Nodes):
1134          throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");
1135          break;
1136          case(ReducedNodes):
1137          if (getMPISize()>1) {
1138             escript::Data temp=escript::Data(in);
1139             temp.expand();
1140             escriptDataC _in2 = temp.getDataC();
1141             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1142          } else {
1143             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1144          }
1145          break;
1146          case(DegreesOfFreedom):
1147          throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");
1148          break;
1149          case(ReducedDegreesOfFreedom):
1150          Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1151          break;
1152          case(Elements):
1153          case(ReducedElements):
1154          if (getMPISize()>1) {
1155             escript::Data temp=escript::Data( in,  reducedContinuousFunction(*this) );
1156             escriptDataC _in2 = temp.getDataC();
1157             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1158          } else {
1159             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1160          }
1161          break;
1162          case(FaceElements):
1163          case(ReducedFaceElements):
1164          if (getMPISize()>1) {
1165             escript::Data temp=escript::Data( in,  reducedContinuousFunction(*this) );
1166             escriptDataC _in2 = temp.getDataC();
1167             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1168          } else {
1169             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1170          }
1171          break;
1172          case(Points):
1173          if (getMPISize()>1) {
1174             escript::Data temp=escript::Data( in,  reducedContinuousFunction(*this) );
1175             escriptDataC _in2 = temp.getDataC();
1176             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in2,&_target);
1177          } else {
1178             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1179          }
1180          break;
1181          case(ContactElementsZero):
1182          case(ContactElementsOne):
1183          case(ReducedContactElementsZero):
1184          case(ReducedContactElementsOne):
1185          if (getMPISize()>1) {
1186             escript::Data temp=escript::Data( in,  reducedContinuousFunction(*this) );
1187             escriptDataC _in2 = temp.getDataC();
1188             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1189          } else {
1190             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1191          }
1192          break;
1193          default:
1194             stringstream temp;
1195             temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1196             throw FinleyAdapterException(temp.str());
1197             break;
1198          }
1199          break;
1200       default:
1201          stringstream temp;
1202          temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();
1203          throw FinleyAdapterException(temp.str());
1204          break;
1205       }
1206       checkFinleyError();
1207  }  }
1208    
1209  //  //
1210  // copies the locations of sample points into x:  // copies the locations of sample points into x:
1211  //  //
1212  void MeshAdapter::setToX(Data& arg) const  void MeshAdapter::setToX(escript::Data& arg) const
1213  {  {
1214    const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(*(arg.getFunctionSpace().getDomain()));
1215    if (argDomain!=*this)     if (argDomain!=*this)
1216       throw FinleyAdapterException("Error - Illegal domain of data point locations");        throw FinleyAdapterException("Error - Illegal domain of data point locations");
1217    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
1218    // in case of values node coordinates we can do the job directly:     // in case of values node coordinates we can do the job directly:
1219    if (arg.getFunctionSpace().getTypeCode()==Nodes) {     if (arg.getFunctionSpace().getTypeCode()==Nodes) {
1220       Finley_Assemble_NodeCoordinates(mesh->Nodes,&(arg.getDataC()));        escriptDataC _arg=arg.getDataC();
1221    } else {        Finley_Assemble_NodeCoordinates(mesh->Nodes,&_arg);
1222       Data tmp_data=Vector(0.0,continuousFunction(asAbstractContinuousDomain()),true);     } else {
1223       Finley_Assemble_NodeCoordinates(mesh->Nodes,&(tmp_data.getDataC()));        escript::Data tmp_data=Vector(0.0,continuousFunction(*this),true);
1224       // this is then interpolated onto arg:        escriptDataC _tmp_data=tmp_data.getDataC();
1225       interpolateOnDomain(arg,tmp_data);        Finley_Assemble_NodeCoordinates(mesh->Nodes,&_tmp_data);
1226    }        // this is then interpolated onto arg:
1227    checkFinleyError();        interpolateOnDomain(arg,tmp_data);
1228       }
1229       checkFinleyError();
1230  }  }
1231    
1232  //  //
1233  // return the normal vectors at the location of data points as a Data object:  // return the normal vectors at the location of data points as a Data object:
1234  //  //
1235  void MeshAdapter::setToNormal(Data& normal) const  void MeshAdapter::setToNormal(escript::Data& normal) const
1236  {  {
1237    const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain());  /*   const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain());*/
1238    if (normalDomain!=*this)     const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(*(normal.getFunctionSpace().getDomain()));
1239       throw FinleyAdapterException("Error - Illegal domain of normal locations");     if (normalDomain!=*this)
1240    Finley_Mesh* mesh=m_finleyMesh.get();        throw FinleyAdapterException("Error - Illegal domain of normal locations");
1241    switch(normal.getFunctionSpace().getTypeCode()) {     Finley_Mesh* mesh=m_finleyMesh.get();
1242      case(Nodes):     escriptDataC _normal=normal.getDataC();
1243        Finley_ErrorCode=TYPE_ERROR;     switch(normal.getFunctionSpace().getTypeCode()) {
1244        sprintf(Finley_ErrorMsg,"Finley does not support surface normal vectors for nodes");     case(Nodes):
1245        break;     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for nodes");
1246      case(Elements):     break;
1247        Finley_ErrorCode=TYPE_ERROR;     case(ReducedNodes):
1248        sprintf(Finley_ErrorMsg,"Finley does not support surface normal vectors for elements");     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced nodes");
1249        break;     break;
1250      case (FaceElements):     case(Elements):
1251        Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&(normal.getDataC()));     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements");
1252        break;     break;
1253      case(Points):     case(ReducedElements):
1254        Finley_ErrorCode=TYPE_ERROR;     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements with reduced integration order");
1255        sprintf(Finley_ErrorMsg,"Finley does not support surface normal vectors for point elements");     break;
1256        break;     case (FaceElements):
1257      case (ContactElementsOne):     Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1258      case (ContactElementsZero):     break;
1259        Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&(normal.getDataC()));     case (ReducedFaceElements):
1260        break;     Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1261      case(DegreesOfFreedom):     break;
1262        Finley_ErrorCode=TYPE_ERROR;     case(Points):
1263        sprintf(Finley_ErrorMsg,"Finley does not support surface normal vectors for degrees of freedom.");     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for point elements");
1264        break;     break;
1265      case(ReducedDegreesOfFreedom):     case (ContactElementsOne):
1266        Finley_ErrorCode=TYPE_ERROR;     case (ContactElementsZero):
1267        sprintf(Finley_ErrorMsg,"Finley does not support surface normal vectors for reduced degrees of freedom.");     Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1268        break;     break;
1269      default:     case (ReducedContactElementsOne):
1270        Finley_ErrorCode=TYPE_ERROR;     case (ReducedContactElementsZero):
1271        sprintf(Finley_ErrorMsg,"Normal Vectors: Finley does not know anything about function space type %d",normal.getFunctionSpace().getTypeCode());     Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1272       break;
1273       case(DegreesOfFreedom):
1274       throw FinleyAdapterException("Error - Finley does not support surface normal vectors for degrees of freedom.");
1275       break;
1276       case(ReducedDegreesOfFreedom):
1277       throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced degrees of freedom.");
1278       break;
1279       default:
1280          stringstream temp;
1281          temp << "Error - Normal Vectors: Finley does not know anything about function space type " << normal.getFunctionSpace().getTypeCode();
1282          throw FinleyAdapterException(temp.str());
1283        break;        break;
1284    }     }
1285    checkFinleyError();     checkFinleyError();
1286  }  }
1287    
1288  //  //
1289  // interpolates data to other domain:  // interpolates data to other domain:
1290  //  //
1291  void MeshAdapter::interpolateACross(Data& target,const Data& source) const  void MeshAdapter::interpolateACross(escript::Data& target,const escript::Data& source) const
1292  {  {
1293    const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());     const_Domain_ptr targetDomain_p=target.getFunctionSpace().getDomain();
1294    if (targetDomain!=*this)     const MeshAdapter* targetDomain=dynamic_cast<const MeshAdapter*>(targetDomain_p.get());
1295       throw FinleyAdapterException("Error - Illegal domain of interpolation target");     if (targetDomain!=this)
1296          throw FinleyAdapterException("Error - Illegal domain of interpolation target");
1297    Finley_ErrorCode=SYSTEM_ERROR;  
1298    sprintf(Finley_ErrorMsg,"Finley does not allow interpolation across domains yet.");     throw FinleyAdapterException("Error - Finley does not allow interpolation across domains yet.");
   checkFinleyError();  
1299  }  }
1300    
1301  //  //
1302  // calculates the integral of a function defined of arg:  // calculates the integral of a function defined of arg:
1303  //  //
1304  void MeshAdapter::setToIntegrals(std::vector<double>& integrals,const Data& arg) const  void MeshAdapter::setToIntegrals(vector<double>& integrals,const escript::Data& arg) const
1305  {  {
1306    const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(*(arg.getFunctionSpace().getDomain()));
1307    if (argDomain!=*this)     if (argDomain!=*this)
1308       throw FinleyAdapterException("Error - Illegal domain of integration kernel");        throw FinleyAdapterException("Error - Illegal domain of integration kernel");
1309    
1310    Finley_Mesh* mesh=m_finleyMesh.get();     double blocktimer_start = blocktimer_time();
1311    switch(arg.getFunctionSpace().getTypeCode()) {     Finley_Mesh* mesh=m_finleyMesh.get();
1312       case(Nodes):     escriptDataC _temp;
1313          Finley_ErrorCode=TYPE_ERROR;     escript::Data temp;
1314          sprintf(Finley_ErrorMsg,"Integral of data on nodes is not supported.");     escriptDataC _arg=arg.getDataC();
1315          break;     switch(arg.getFunctionSpace().getTypeCode()) {
1316       case(Elements):     case(Nodes):
1317          Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&(arg.getDataC()),&integrals[0]);     temp=escript::Data( arg, escript::function(*this) );
1318          break;     _temp=temp.getDataC();
1319       case(FaceElements):     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1320          Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&(arg.getDataC()),&integrals[0]);     break;
1321          break;     case(ReducedNodes):
1322       case(Points):     temp=escript::Data( arg, escript::function(*this) );
1323          Finley_ErrorCode=TYPE_ERROR;     _temp=temp.getDataC();
1324          sprintf(Finley_ErrorMsg,"Integral of data on points is not supported.");     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1325          break;     break;
1326       case(ContactElementsZero):     case(Elements):
1327          Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&(arg.getDataC()),&integrals[0]);     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1328          break;     break;
1329       case(ContactElementsOne):     case(ReducedElements):
1330          Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&(arg.getDataC()),&integrals[0]);     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1331          break;     break;
1332       case(DegreesOfFreedom):     case(FaceElements):
1333          Finley_ErrorCode=TYPE_ERROR;     Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1334          sprintf(Finley_ErrorMsg,"Integral of data on degrees of freedom is not supported.");     break;
1335          break;     case(ReducedFaceElements):
1336       case(ReducedDegreesOfFreedom):     Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1337          Finley_ErrorCode=TYPE_ERROR;     break;
1338          sprintf(Finley_ErrorMsg,"Integral of data on reduced degrees of freedom is not supported.");     case(Points):
1339          break;     throw FinleyAdapterException("Error - Integral of data on points is not supported.");
1340       default:     break;
1341          Finley_ErrorCode=TYPE_ERROR;     case(ContactElementsZero):
1342          sprintf(Finley_ErrorMsg,"Integrals: Finley does not know anything about function space type %d",arg.getFunctionSpace().getTypeCode());     Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1343          break;     break;
1344    }     case(ReducedContactElementsZero):
1345    checkFinleyError();     Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1346       break;
1347       case(ContactElementsOne):
1348       Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1349       break;
1350       case(ReducedContactElementsOne):
1351       Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1352       break;
1353       case(DegreesOfFreedom):
1354       temp=escript::Data( arg, escript::function(*this) );
1355       _temp=temp.getDataC();
1356       Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1357       break;
1358       case(ReducedDegreesOfFreedom):
1359       temp=escript::Data( arg, escript::function(*this) );
1360       _temp=temp.getDataC();
1361       Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1362       break;
1363       default:
1364          stringstream temp;
1365          temp << "Error - Integrals: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1366          throw FinleyAdapterException(temp.str());
1367          break;
1368       }
1369       checkFinleyError();
1370       blocktimer_increment("integrate()", blocktimer_start);
1371  }  }
1372    
1373  //  //
1374  // calculates the gradient of arg:  // calculates the gradient of arg:
1375  //  //
1376  void MeshAdapter::setToGradient(Data& grad,const Data& arg) const  void MeshAdapter::setToGradient(escript::Data& grad,const escript::Data& arg) const
1377  {  {
1378    const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(*(arg.getFunctionSpace().getDomain()));
1379    if (argDomain!=*this)     if (argDomain!=*this)
1380      throw FinleyAdapterException("Error - Illegal domain of gradient argument");        throw FinleyAdapterException("Error - Illegal domain of gradient argument");
1381    const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(grad.getFunctionSpace().getDomain());     const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(*(grad.getFunctionSpace().getDomain()));
1382    if (gradDomain!=*this)     if (gradDomain!=*this)
1383       throw FinleyAdapterException("Error - Illegal domain of gradient");        throw FinleyAdapterException("Error - Illegal domain of gradient");
1384    
1385    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
1386    switch(grad.getFunctionSpace().getTypeCode()) {     escriptDataC _grad=grad.getDataC();
1387         case(Nodes):     escriptDataC nodeDataC;
1388            Finley_ErrorCode=TYPE_ERROR;     escript::Data temp;
1389            sprintf(Finley_ErrorMsg,"Gradient at nodes is not supported.");     if (getMPISize()>1) {
1390            break;        if( arg.getFunctionSpace().getTypeCode() == DegreesOfFreedom ) {
1391         case(Elements):           temp=escript::Data( arg,  continuousFunction(*this) );
1392            Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&(grad.getDataC()),&(arg.getDataC()));           nodeDataC = temp.getDataC();
1393            break;        } else if( arg.getFunctionSpace().getTypeCode() == ReducedDegreesOfFreedom ) {
1394         case(FaceElements):           temp=escript::Data( arg,  reducedContinuousFunction(*this) );
1395            Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&(grad.getDataC()),&(arg.getDataC()));           nodeDataC = temp.getDataC();
1396            break;        } else {
1397         case(Points):           nodeDataC = arg.getDataC();
1398            Finley_ErrorCode=TYPE_ERROR;        }
1399            sprintf(Finley_ErrorMsg,"Gradient at points is not supported.");     } else {
1400            break;        nodeDataC = arg.getDataC();
1401         case(ContactElementsZero):     }
1402            Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&(grad.getDataC()),&(arg.getDataC()));     switch(grad.getFunctionSpace().getTypeCode()) {
1403            break;     case(Nodes):
1404         case(ContactElementsOne):     throw FinleyAdapterException("Error - Gradient at nodes is not supported.");
1405            Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&(grad.getDataC()),&(arg.getDataC()));     break;
1406            break;     case(ReducedNodes):
1407         case(DegreesOfFreedom):     throw FinleyAdapterException("Error - Gradient at reduced nodes is not supported.");
1408            Finley_ErrorCode=TYPE_ERROR;     break;
1409            sprintf(Finley_ErrorMsg,"Gradient at degrees of freedom is not supported.");     case(Elements):
1410            break;     Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1411         case(ReducedDegreesOfFreedom):     break;
1412            Finley_ErrorCode=TYPE_ERROR;     case(ReducedElements):
1413            sprintf(Finley_ErrorMsg,"Gradient at reduced degrees of freedom is not supported.");     Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1414            break;     break;
1415         default:     case(FaceElements):
1416            Finley_ErrorCode=TYPE_ERROR;     Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1417            sprintf(Finley_ErrorMsg,"Gradient: Finley does not know anything about function space type %d",arg.getFunctionSpace().getTypeCode());     break;
1418            break;     case(ReducedFaceElements):
1419    }     Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1420    checkFinleyError();     break;
1421       case(Points):
1422       throw FinleyAdapterException("Error - Gradient at points is not supported.");
1423       break;
1424       case(ContactElementsZero):
1425       Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1426       break;
1427       case(ReducedContactElementsZero):
1428       Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1429       break;
1430       case(ContactElementsOne):
1431       Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1432       break;
1433       case(ReducedContactElementsOne):
1434       Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1435       break;
1436       case(DegreesOfFreedom):
1437       throw FinleyAdapterException("Error - Gradient at degrees of freedom is not supported.");
1438       break;
1439       case(ReducedDegreesOfFreedom):
1440       throw FinleyAdapterException("Error - Gradient at reduced degrees of freedom is not supported.");
1441       break;
1442       default:
1443          stringstream temp;
1444          temp << "Error - Gradient: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1445          throw FinleyAdapterException(temp.str());
1446          break;
1447       }
1448       checkFinleyError();
1449  }  }
1450    
1451  //  //
1452  // returns the size of elements:  // returns the size of elements:
1453  //  //
1454  void MeshAdapter::setToSize(Data& size) const  void MeshAdapter::setToSize(escript::Data& size) const
1455  {  {
1456    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
1457    escriptDataC tmp=size.getDataC();     escriptDataC tmp=size.getDataC();
1458    switch(size.getFunctionSpace().getTypeCode()) {     switch(size.getFunctionSpace().getTypeCode()) {
1459         case(Nodes):     case(Nodes):
1460            Finley_ErrorCode=TYPE_ERROR;     throw FinleyAdapterException("Error - Size of nodes is not supported.");
1461            sprintf(Finley_ErrorMsg,"Size of nodes is not supported.");     break;
1462            break;     case(ReducedNodes):
1463         case(Elements):     throw FinleyAdapterException("Error - Size of reduced nodes is not supported.");
1464            Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);     break;
1465            break;     case(Elements):
1466         case(FaceElements):     Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1467            Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);     break;
1468            break;     case(ReducedElements):
1469         case(Points):     Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1470            Finley_ErrorCode=TYPE_ERROR;     break;
1471            sprintf(Finley_ErrorMsg,"Size of point elements is not supported.");     case(FaceElements):
1472            break;     Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1473         case(ContactElementsZero):     break;
1474         case(ContactElementsOne):     case(ReducedFaceElements):
1475            Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);     Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1476            break;     break;
1477         case(DegreesOfFreedom):     case(Points):
1478            Finley_ErrorCode=TYPE_ERROR;     throw FinleyAdapterException("Error - Size of point elements is not supported.");
1479            sprintf(Finley_ErrorMsg,"Size of degrees of freedom is not supported.");     break;
1480            break;     case(ContactElementsZero):
1481         case(ReducedDegreesOfFreedom):     case(ContactElementsOne):
1482            Finley_ErrorCode=TYPE_ERROR;     Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1483            sprintf(Finley_ErrorMsg,"Size of reduced degrees of freedom is not supported.");     break;
1484            break;     case(ReducedContactElementsZero):
1485         default:     case(ReducedContactElementsOne):
1486            Finley_ErrorCode=TYPE_ERROR;     Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1487            sprintf(Finley_ErrorMsg,"Element size: Finley does not know anything about function space type %d",size.getFunctionSpace().getTypeCode());     break;
1488            break;     case(DegreesOfFreedom):
1489    }     throw FinleyAdapterException("Error - Size of degrees of freedom is not supported.");
1490    checkFinleyError();     break;
1491       case(ReducedDegreesOfFreedom):
1492       throw FinleyAdapterException("Error - Size of reduced degrees of freedom is not supported.");
1493       break;
1494       default:
1495          stringstream temp;
1496          temp << "Error - Element size: Finley does not know anything about function space type " << size.getFunctionSpace().getTypeCode();
1497          throw FinleyAdapterException(temp.str());
1498          break;
1499       }
1500       checkFinleyError();
1501  }  }
1502  // sets the location of nodes:  
1503  void MeshAdapter::setNewX(const Data& new_x)  //
1504    // sets the location of nodes
1505    //
1506    void MeshAdapter::setNewX(const escript::Data& new_x)
1507  {  {
1508    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
1509    const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(new_x.getFunctionSpace().getDomain());     escriptDataC tmp;
1510    if (newDomain!=*this)     const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(*(new_x.getFunctionSpace().getDomain()));
1511       throw FinleyAdapterException("Error - Illegal domain of new point locations");     if (newDomain!=*this)
1512    Finley_NodeFile_setCoordinates(mesh->Nodes,&(new_x.getDataC()));        throw FinleyAdapterException("Error - Illegal domain of new point locations");
1513    checkFinleyError();     if ( new_x.getFunctionSpace() == continuousFunction(*this) ) {
1514  }         tmp = new_x.getDataC();
1515  // saves a data array in openDX format:         Finley_Mesh_setCoordinates(mesh,&tmp);
1516  void MeshAdapter::saveDX(const std::string& filename,const Data& arg) const     } else {
1517  {         throw FinleyAdapterException("As of version escript3.3 - SetNewX only accepts ContinuousFunction arguments please interpolate.");    
1518    Finley_Mesh_saveDX(filename.c_str(),m_finleyMesh.get(),&(arg.getDataC()));  /*       escript::Data new_x_inter=escript::Data( new_x,  continuousFunction(*this) );
1519    checkFinleyError();         tmp = new_x_inter.getDataC();
1520  }         Finley_Mesh_setCoordinates(mesh,&tmp);*/
1521  // creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros:     }
1522  SystemMatrixAdapter MeshAdapter::newSystemMatrix(     checkFinleyError();
1523                        const int row_blocksize,  }
1524                        const escript::FunctionSpace& row_functionspace,  
1525                        const int column_blocksize,  //
1526                        const escript::FunctionSpace& column_functionspace,  // Helper for the save* methods. Extracts optional data variable names and the
1527                        const int type) const  // corresponding pointers from python dictionary. Caller must free arrays.
1528  {  //
1529      int reduceRowOrder=0;  void MeshAdapter::extractArgsFromDict(const boost::python::dict& arg, int& numData, char**& names, escriptDataC*& data, escriptDataC**& dataPtr) const
1530      int reduceColOrder=0;  {
1531      // is the domain right?     numData = boost::python::extract<int>(arg.attr("__len__")());
1532      const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(row_functionspace.getDomain());     /* win32 refactor */
1533      if (row_domain!=*this)     names = (numData>0) ? TMPMEMALLOC(numData, char*) : (char**)NULL;
1534            throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator.");     data = (numData>0) ? TMPMEMALLOC(numData,escriptDataC) : (escriptDataC*)NULL;
1535      const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(column_functionspace.getDomain());     dataPtr = (numData>0) ? TMPMEMALLOC(numData,escriptDataC*) : (escriptDataC**)NULL;
1536      if (col_domain!=*this)  
1537            throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator.");     boost::python::list keys=arg.keys();
1538      // is the function space type right     for (int i=0; i<numData; ++i) {
1539      if (row_functionspace.getTypeCode()==DegreesOfFreedom) {        string n=boost::python::extract<string>(keys[i]);
1540          reduceRowOrder=0;        escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1541      } else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {        if (dynamic_cast<const MeshAdapter&>(*(d.getFunctionSpace().getDomain())) !=*this)
1542          reduceRowOrder=1;           throw FinleyAdapterException("Error: Data must be defined on same Domain");
1543      } else {        data[i] = d.getDataC();
1544          throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");        dataPtr[i] = &(data[i]);
1545      }        names[i] = TMPMEMALLOC(n.length()+1, char);
1546      if (column_functionspace.getTypeCode()==DegreesOfFreedom) {        strcpy(names[i], n.c_str());
1547          reduceColOrder=0;     }
1548      } else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {  }
1549          reduceColOrder=1;  
1550      } else {  //
1551          throw FinleyAdapterException("Error - illegal function space type for system matrix columns.");  // saves mesh and optionally data arrays in openDX format
1552    //
1553    void MeshAdapter::saveDX(const string& filename,const boost::python::dict& arg) const
1554    {
1555       int num_data;
1556       char **names;
1557       escriptDataC *data;
1558       escriptDataC **ptr_data;
1559    
1560       extractArgsFromDict(arg, num_data, names, data, ptr_data);
1561       Finley_Mesh_saveDX(filename.c_str(), m_finleyMesh.get(), num_data, names, ptr_data);
1562       checkFinleyError();
1563    
1564       /* win32 refactor */
1565       TMPMEMFREE(data);
1566       TMPMEMFREE(ptr_data);
1567       for(int i=0; i<num_data; i++)
1568       {
1569          TMPMEMFREE(names[i]);
1570       }
1571       TMPMEMFREE(names);
1572    }
1573    
1574    //
1575    // saves mesh and optionally data arrays in VTK format
1576    //
1577    void MeshAdapter::saveVTK(const string& filename,const boost::python::dict& arg,  const string& metadata, const string& metadata_schema) const
1578    {
1579        boost::python::object pySaveVTK = boost::python::import("esys.weipa").attr("_saveVTK");
1580        pySaveVTK(filename, const_cast<MeshAdapter*>(this)->getPtr(),
1581                  metadata, metadata_schema, arg);
1582    }
1583    
1584    bool MeshAdapter::ownSample(int fs_code, index_t id) const
1585    {
1586        if (getMPISize() > 1) {
1587    #ifdef ESYS_MPI
1588            index_t myFirstNode=0, myLastNode=0, k=0;
1589            index_t* globalNodeIndex=0;
1590            Finley_Mesh* mesh_p=m_finleyMesh.get();
1591            /*
1592             * this method is only used by saveDataCSV which would use the returned
1593             * values for reduced nodes wrongly so this case is disabled for now
1594            if (fs_code == FINLEY_REDUCED_NODES)
1595            {
1596                myFirstNode = Finley_NodeFile_getFirstReducedNode(mesh_p->Nodes);
1597                myLastNode = Finley_NodeFile_getLastReducedNode(mesh_p->Nodes);
1598                globalNodeIndex = Finley_NodeFile_borrowGlobalReducedNodesIndex(mesh_p->Nodes);
1599            }
1600            else
1601            */
1602            if (fs_code == FINLEY_NODES)
1603            {
1604                myFirstNode = Finley_NodeFile_getFirstNode(mesh_p->Nodes);
1605                myLastNode = Finley_NodeFile_getLastNode(mesh_p->Nodes);
1606                globalNodeIndex = Finley_NodeFile_borrowGlobalNodesIndex(mesh_p->Nodes);
1607            }
1608            else
1609            {
1610                throw FinleyAdapterException("Unsupported function space type for ownSample()");
1611            }
1612    
1613            k=globalNodeIndex[id];
1614            return static_cast<bool>( (myFirstNode <= k) && (k < myLastNode) );
1615    #endif
1616      }      }
1617      // generate matrix:      return true;
       
     Finley_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder);  
     checkFinleyError();  
     Finley_SystemMatrix* fsystemMatrix=Finley_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize);  
     checkFinleyError();  
     return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace);  
1618  }  }
1619    
1620    
1621    //
1622    // creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros
1623    //
1624    ASM_ptr MeshAdapter::newSystemMatrix(
1625                                                     const int row_blocksize,
1626                                                     const escript::FunctionSpace& row_functionspace,
1627                                                     const int column_blocksize,
1628                                                     const escript::FunctionSpace& column_functionspace,
1629                                                     const int type) const
1630    {
1631       int reduceRowOrder=0;
1632       int reduceColOrder=0;
1633       // is the domain right?
1634       const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(*(row_functionspace.getDomain()));
1635       if (row_domain!=*this)
1636          throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator.");
1637       const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(*(column_functionspace.getDomain()));
1638       if (col_domain!=*this)
1639          throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator.");
1640       // is the function space type right
1641       if (row_functionspace.getTypeCode()==DegreesOfFreedom) {
1642          reduceRowOrder=0;
1643       } else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1644          reduceRowOrder=1;
1645       } else {
1646          throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1647       }
1648       if (column_functionspace.getTypeCode()==DegreesOfFreedom) {
1649          reduceColOrder=0;
1650       } else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1651          reduceColOrder=1;
1652       } else {
1653          throw FinleyAdapterException("Error - illegal function space type for system matrix columns.");
1654       }
1655       // generate matrix:
1656    
1657       Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder);
1658       checkFinleyError();
1659       Paso_SystemMatrix* fsystemMatrix;
1660       int trilinos = 0;
1661       if (trilinos) {
1662    #ifdef TRILINOS
1663          /* Allocation Epetra_VrbMatrix here */
1664    #endif
1665       }
1666       else {
1667          fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize,FALSE);
1668       }
1669       checkPasoError();
1670       Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1671       SystemMatrixAdapter* sma=new SystemMatrixAdapter(fsystemMatrix, row_blocksize, row_functionspace, column_blocksize, column_functionspace);
1672       return ASM_ptr(sma);
1673    //   return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace);
1674    }
1675    
1676    //
1677    // creates a TransportProblemAdapter
1678    //
1679    ATP_ptr MeshAdapter::newTransportProblem(
1680                                                             const int blocksize,
1681                                                             const escript::FunctionSpace& functionspace,
1682                                                             const int type) const
1683    {
1684       int reduceOrder=0;
1685       // is the domain right?
1686       const MeshAdapter& domain=dynamic_cast<const MeshAdapter&>(*(functionspace.getDomain()));
1687       if (domain!=*this)
1688          throw FinleyAdapterException("Error - domain of function space does not match the domain of transport problem generator.");
1689       // is the function space type right
1690       if (functionspace.getTypeCode()==DegreesOfFreedom) {
1691          reduceOrder=0;
1692       } else if (functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1693          reduceOrder=1;
1694       } else {
1695          throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1696       }
1697       // generate matrix:
1698    
1699       Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceOrder,reduceOrder);
1700       checkFinleyError();
1701       Paso_TransportProblem* transportProblem;
1702       transportProblem=Paso_TransportProblem_alloc(fsystemMatrixPattern,blocksize);
1703       checkPasoError();
1704       Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1705       TransportProblemAdapter* tpa=new TransportProblemAdapter(transportProblem,blocksize,functionspace);
1706       return ATP_ptr(tpa);
1707    //   return TransportProblemAdapter(transportProblem, blocksize,functionspace);
1708    }
1709    
1710  //  //
1711  // vtkObject MeshAdapter::createVtkObject() const  // vtkObject MeshAdapter::createVtkObject() const
1712  // TODO:  // TODO:
1713  //  //
1714    
1715  //  //
1716  // returns true if data at the atom_type is considered as being cell centered:  // returns true if data at the atom_type is considered as being cell centered:
1717  bool MeshAdapter::isCellOriented(int functionSpaceCode) const  bool MeshAdapter::isCellOriented(int functionSpaceCode) const
1718  {  {
1719    switch(functionSpaceCode) {     switch(functionSpaceCode) {
1720         case(Nodes):     case(Nodes):
1721         case(DegreesOfFreedom):     case(DegreesOfFreedom):
1722         case(ReducedDegreesOfFreedom):     case(ReducedDegreesOfFreedom):
1723       return false;
1724       break;
1725       case(Elements):
1726       case(FaceElements):
1727       case(Points):
1728       case(ContactElementsZero):
1729       case(ContactElementsOne):
1730       case(ReducedElements):
1731       case(ReducedFaceElements):
1732       case(ReducedContactElementsZero):
1733       case(ReducedContactElementsOne):
1734       return true;
1735       break;
1736       default:
1737          stringstream temp;
1738          temp << "Error - Cell: Finley does not know anything about function space type " << functionSpaceCode;
1739          throw FinleyAdapterException(temp.str());
1740          break;
1741       }
1742       checkFinleyError();
1743       return false;
1744    }
1745    
1746    bool
1747    MeshAdapter::commonFunctionSpace(const vector<int>& fs, int& resultcode) const
1748    {
1749       /* The idea is to use equivalence classes. [Types which can be interpolated back and forth]
1750        class 1: DOF <-> Nodes
1751        class 2: ReducedDOF <-> ReducedNodes
1752        class 3: Points
1753        class 4: Elements
1754        class 5: ReducedElements
1755        class 6: FaceElements
1756        class 7: ReducedFaceElements
1757        class 8: ContactElementZero <-> ContactElementOne
1758        class 9: ReducedContactElementZero <-> ReducedContactElementOne
1759    
1760       There is also a set of lines. Interpolation is possible down a line but not between lines.
1761       class 1 and 2 belong to all lines so aren't considered.
1762        line 0: class 3
1763        line 1: class 4,5
1764        line 2: class 6,7
1765        line 3: class 8,9
1766    
1767       For classes with multiple members (eg class 2) we have vars to record if there is at least one instance.
1768       eg hasnodes is true if we have at least one instance of Nodes.
1769       */
1770        if (fs.empty())
1771        {
1772            return false;
1773        }
1774        vector<int> hasclass(10);
1775        vector<int> hasline(4);
1776        bool hasnodes=false;
1777        bool hasrednodes=false;
1778        bool hascez=false;
1779        bool hasrcez=false;
1780        for (int i=0;i<fs.size();++i)
1781        {
1782        switch(fs[i])
1783        {
1784        case(Nodes):   hasnodes=true;   // no break is deliberate
1785        case(DegreesOfFreedom):
1786            hasclass[1]=1;
1787            break;
1788        case(ReducedNodes):    hasrednodes=true;    // no break is deliberate
1789        case(ReducedDegreesOfFreedom):
1790            hasclass[2]=1;
1791            break;
1792        case(Points):
1793            hasline[0]=1;
1794            hasclass[3]=1;
1795            break;
1796        case(Elements):
1797            hasclass[4]=1;
1798            hasline[1]=1;
1799            break;
1800        case(ReducedElements):
1801            hasclass[5]=1;
1802            hasline[1]=1;
1803            break;
1804        case(FaceElements):
1805            hasclass[6]=1;
1806            hasline[2]=1;
1807            break;
1808        case(ReducedFaceElements):
1809            hasclass[7]=1;
1810            hasline[2]=1;
1811            break;
1812        case(ContactElementsZero):  hascez=true;    // no break is deliberate
1813        case(ContactElementsOne):
1814            hasclass[8]=1;
1815            hasline[3]=1;
1816            break;
1817        case(ReducedContactElementsZero):   hasrcez=true;   // no break is deliberate
1818        case(ReducedContactElementsOne):
1819            hasclass[9]=1;
1820            hasline[3]=1;
1821            break;
1822        default:
1823            return false;
1824        }
1825        }
1826        int totlines=hasline[0]+hasline[1]+hasline[2]+hasline[3];
1827        // fail if we have more than one leaf group
1828    
1829        if (totlines>1)
1830        {
1831        return false;   // there are at least two branches we can't interpolate between
1832        }
1833        else if (totlines==1)
1834        {
1835        if (hasline[0]==1)      // we have points
1836        {
1837            resultcode=Points;
1838        }
1839        else if (hasline[1]==1)
1840        {
1841            if (hasclass[5]==1)
1842            {
1843            resultcode=ReducedElements;
1844            }
1845            else
1846            {
1847            resultcode=Elements;
1848            }
1849        }
1850        else if (hasline[2]==1)
1851        {
1852            if (hasclass[7]==1)
1853            {
1854            resultcode=ReducedFaceElements;
1855            }
1856            else
1857            {
1858            resultcode=FaceElements;
1859            }
1860        }
1861        else    // so we must be in line3
1862        {
1863            if (hasclass[9]==1)
1864            {
1865            // need something from class 9
1866            resultcode=(hasrcez?ReducedContactElementsZero:ReducedContactElementsOne);
1867            }
1868            else
1869            {
1870            // something from class 8
1871            resultcode=(hascez?ContactElementsZero:ContactElementsOne);
1872            }
1873        }
1874        }
1875        else    // totlines==0
1876        {
1877        if (hasclass[2]==1)
1878        {
1879            // something from class 2
1880            resultcode=(hasrednodes?ReducedNodes:ReducedDegreesOfFreedom);
1881        }
1882        else
1883        {   // something from class 1
1884            resultcode=(hasnodes?Nodes:DegreesOfFreedom);
1885        }
1886        }
1887        return true;
1888    }
1889    
1890    bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const
1891    {
1892       switch(functionSpaceType_source) {
1893       case(Nodes):
1894        switch(functionSpaceType_target) {
1895        case(Nodes):
1896        case(ReducedNodes):
1897        case(ReducedDegreesOfFreedom):
1898        case(DegreesOfFreedom):
1899        case(Elements):
1900        case(ReducedElements):
1901        case(FaceElements):
1902        case(ReducedFaceElements):
1903        case(Points):
1904        case(ContactElementsZero):
1905        case(ReducedContactElementsZero):
1906        case(ContactElementsOne):
1907        case(ReducedContactElementsOne):
1908        return true;
1909        default:
1910              stringstream temp;
1911              temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1912              throw FinleyAdapterException(temp.str());
1913       }
1914       break;
1915       case(ReducedNodes):
1916        switch(functionSpaceType_target) {
1917        case(ReducedNodes):
1918        case(ReducedDegreesOfFreedom):
1919        case(Elements):
1920        case(ReducedElements):
1921        case(FaceElements):
1922        case(ReducedFaceElements):
1923        case(Points):
1924        case(ContactElementsZero):
1925        case(ReducedContactElementsZero):
1926        case(ContactElementsOne):
1927        case(ReducedContactElementsOne):
1928        return true;
1929        case(Nodes):
1930        case(DegreesOfFreedom):
1931        return false;
1932        default:
1933            stringstream temp;
1934            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1935            throw FinleyAdapterException(temp.str());
1936       }
1937       break;
1938       case(Elements):
1939        if (functionSpaceType_target==Elements) {
1940          return true;
1941        } else if (functionSpaceType_target==ReducedElements) {
1942          return true;
1943            } else {
1944            return false;            return false;
1945            }
1946       case(ReducedElements):
1947        if (functionSpaceType_target==ReducedElements) {
1948          return true;
1949        } else {
1950              return false;
1951        }
1952       case(FaceElements):
1953        if (functionSpaceType_target==FaceElements) {
1954                return true;
1955        } else if (functionSpaceType_target==ReducedFaceElements) {
1956                return true;
1957        } else {
1958                return false;
1959        }
1960       case(ReducedFaceElements):
1961        if (functionSpaceType_target==ReducedFaceElements) {
1962                return true;
1963        } else {
1964            return false;
1965        }
1966       case(Points):
1967        if (functionSpaceType_target==Points) {
1968                return true;
1969        } else {
1970                return false;
1971        }
1972       case(ContactElementsZero):
1973       case(ContactElementsOne):
1974        if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {
1975                return true;
1976        } else if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1977                return true;
1978        } else {
1979                return false;
1980        }
1981       case(ReducedContactElementsZero):
1982       case(ReducedContactElementsOne):
1983        if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1984                return true;
1985        } else {
1986                return false;
1987        }
1988       case(DegreesOfFreedom):
1989        switch(functionSpaceType_target) {
1990        case(ReducedDegreesOfFreedom):
1991        case(DegreesOfFreedom):
1992        case(Nodes):
1993        case(ReducedNodes):
1994        case(Elements):
1995        case(ReducedElements):
1996        case(Points):
1997        case(FaceElements):
1998        case(ReducedFaceElements):
1999        case(ContactElementsZero):
2000        case(ReducedContactElementsZero):
2001        case(ContactElementsOne):
2002        case(ReducedContactElementsOne):
2003        return true;
2004        default:
2005            stringstream temp;
2006            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
2007            throw FinleyAdapterException(temp.str());
2008        }
2009        break;
2010       case(ReducedDegreesOfFreedom):
2011       switch(functionSpaceType_target) {
2012        case(ReducedDegreesOfFreedom):
2013        case(ReducedNodes):
2014        case(Elements):
2015        case(ReducedElements):
2016        case(FaceElements):
2017        case(ReducedFaceElements):
2018        case(Points):
2019        case(ContactElementsZero):
2020        case(ReducedContactElementsZero):
2021        case(ContactElementsOne):
2022        case(ReducedContactElementsOne):
2023        return true;
2024        case(Nodes):
2025        case(DegreesOfFreedom):
2026        return false;
2027        default:
2028            stringstream temp;
2029            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
2030            throw FinleyAdapterException(temp.str());
2031        }
2032        break;
2033       default:
2034          stringstream temp;
2035          temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;
2036          throw FinleyAdapterException(temp.str());
2037          break;
2038       }
2039       checkFinleyError();
2040       return false;
2041    }
2042    
2043    bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const
2044    {
2045       return false;
2046    }
2047    
2048    bool MeshAdapter::operator==(const AbstractDomain& other) const
2049    {
2050       const MeshAdapter* temp=dynamic_cast<const MeshAdapter*>(&other);
2051       if (temp!=0) {
2052          return (m_finleyMesh==temp->m_finleyMesh);
2053       } else {
2054          return false;
2055       }
2056    }
2057    
2058    bool MeshAdapter::operator!=(const AbstractDomain& other) const
2059    {
2060       return !(operator==(other));
2061    }
2062    
2063    int MeshAdapter::getSystemMatrixTypeId(const int solver, const int preconditioner, const int package, const bool symmetry) const
2064    {
2065       Finley_Mesh* mesh=m_finleyMesh.get();
2066       return SystemMatrixAdapter::getSystemMatrixTypeId(solver, preconditioner,
2067               package, symmetry, mesh->MPIInfo);
2068    }
2069    
2070    int MeshAdapter::getTransportTypeId(const int solver, const int preconditioner, const int package, const bool symmetry) const
2071    {
2072       Finley_Mesh* mesh=m_finleyMesh.get();
2073       return TransportProblemAdapter::getTransportTypeId(solver, preconditioner,
2074               package, symmetry, mesh->MPIInfo);
2075    }
2076    
2077    escript::Data MeshAdapter::getX() const
2078    {
2079       return continuousFunction(*this).getX();
2080    }
2081    
2082    escript::Data MeshAdapter::getNormal() const
2083    {
2084       return functionOnBoundary(*this).getNormal();
2085    }
2086    
2087    escript::Data MeshAdapter::getSize() const
2088    {
2089       return escript::function(*this).getSize();
2090    }
2091    
2092    const int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const
2093    {
2094       int *out = NULL;
2095       Finley_Mesh* mesh=m_finleyMesh.get();
2096       switch (functionSpaceType) {
2097       case(Nodes):
2098       out=mesh->Nodes->Id;
2099       break;
2100       case(ReducedNodes):
2101       out=mesh->Nodes->reducedNodesId;
2102       break;
2103       case(Elements):
2104       out=mesh->Elements->Id;
2105       break;
2106       case(ReducedElements):
2107       out=mesh->Elements->Id;
2108       break;
2109       case(FaceElements):
2110       out=mesh->FaceElements->Id;
2111       break;
2112       case(ReducedFaceElements):
2113       out=mesh->FaceElements->Id;
2114       break;
2115       case(Points):
2116       out=mesh->Points->Id;
2117       break;
2118       case(ContactElementsZero):
2119       out=mesh->ContactElements->Id;
2120       break;
2121       case(ReducedContactElementsZero):
2122       out=mesh->ContactElements->Id;
2123       break;
2124       case(ContactElementsOne):
2125       out=mesh->ContactElements->Id;
2126       break;
2127       case(ReducedContactElementsOne):
2128       out=mesh->ContactElements->Id;
2129       break;
2130       case(DegreesOfFreedom):
2131       out=mesh->Nodes->degreesOfFreedomId;
2132       break;
2133       case(ReducedDegreesOfFreedom):
2134       out=mesh->Nodes->reducedDegreesOfFreedomId;
2135       break;
2136       default:
2137          stringstream temp;
2138          temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
2139          throw FinleyAdapterException(temp.str());
2140          break;
2141       }
2142       return out;
2143    }
2144    int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const
2145    {
2146       int out=0;
2147       Finley_Mesh* mesh=m_finleyMesh.get();
2148       switch (functionSpaceType) {
2149       case(Nodes):
2150       out=mesh->Nodes->Tag[sampleNo];
2151       break;
2152       case(ReducedNodes):
2153       throw FinleyAdapterException(" Error - ReducedNodes does not support tags.");
2154       break;
2155       case(Elements):
2156       out=mesh->Elements->Tag[sampleNo];
2157       break;
2158       case(ReducedElements):
2159       out=mesh->Elements->Tag[sampleNo];
2160       break;
2161       case(FaceElements):
2162       out=mesh->FaceElements->Tag[sampleNo];
2163       break;
2164       case(ReducedFaceElements):
2165       out=mesh->FaceElements->Tag[sampleNo];
2166       break;
2167       case(Points):
2168       out=mesh->Points->Tag[sampleNo];
2169       break;
2170       case(ContactElementsZero):
2171       out=mesh->ContactElements->Tag[sampleNo];
2172       break;
2173       case(ReducedContactElementsZero):
2174       out=mesh->ContactElements->Tag[sampleNo];
2175       break;
2176       case(ContactElementsOne):
2177       out=mesh->ContactElements->Tag[sampleNo];
2178       break;
2179       case(ReducedContactElementsOne):
2180       out=mesh->ContactElements->Tag[sampleNo];
2181       break;
2182       case(DegreesOfFreedom):
2183       throw FinleyAdapterException(" Error - DegreesOfFreedom does not support tags.");
2184       break;
2185       case(ReducedDegreesOfFreedom):
2186       throw FinleyAdapterException(" Error - ReducedDegreesOfFreedom does not support tags.");
2187       break;
2188       default:
2189          stringstream temp;
2190          temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
2191          throw FinleyAdapterException(temp.str());
2192          break;
2193       }
2194       return out;
2195    }
2196    
2197    
2198    void MeshAdapter::setTags(const int functionSpaceType, const int newTag, const escript::Data& mask) const
2199    {
2200       Finley_Mesh* mesh=m_finleyMesh.get();
2201       escriptDataC tmp=mask.getDataC();
2202       switch(functionSpaceType) {
2203       case(Nodes):
2204       Finley_NodeFile_setTags(mesh->Nodes,newTag,&tmp);
2205       break;
2206       case(ReducedNodes):
2207       throw FinleyAdapterException("Error - ReducedNodes does not support tags");
2208       break;
2209       case(DegreesOfFreedom):
2210       throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
2211       break;
2212       case(ReducedDegreesOfFreedom):
2213       throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
2214       break;
2215       case(Elements):
2216       Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
2217       break;
2218       case(ReducedElements):
2219       Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
2220       break;
2221       case(FaceElements):
2222       Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
2223       break;
2224       case(ReducedFaceElements):
2225       Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
2226       break;
2227       case(Points):
2228       Finley_ElementFile_setTags(mesh->Points,newTag,&tmp);
2229       break;
2230       case(ContactElementsZero):
2231       Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2232       break;
2233       case(ReducedContactElementsZero):
2234       Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2235       break;
2236       case(ContactElementsOne):
2237       Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2238       break;
2239       case(ReducedContactElementsOne):
2240       Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2241       break;
2242       default:
2243          stringstream temp;
2244          temp << "Error - Finley does not know anything about function space type " << functionSpaceType;
2245          throw FinleyAdapterException(temp.str());
2246       }
2247       checkFinleyError();
2248       return;
2249    }
2250    
2251    void MeshAdapter::setTagMap(const string& name,  int tag)
2252    {
2253       Finley_Mesh* mesh=m_finleyMesh.get();
2254       Finley_Mesh_addTagMap(mesh, name.c_str(),tag);
2255       checkFinleyError();
2256       // throwStandardException("MeshAdapter::set TagMap is not implemented.");
2257    }
2258    
2259    int MeshAdapter::getTag(const string& name) const
2260    {
2261       Finley_Mesh* mesh=m_finleyMesh.get();
2262       int tag=0;
2263       tag=Finley_Mesh_getTag(mesh, name.c_str());
2264       checkFinleyError();
2265       // throwStandardException("MeshAdapter::getTag is not implemented.");
2266       return tag;
2267    }
2268    
2269    bool MeshAdapter::isValidTagName(const string& name) const
2270    {
2271       Finley_Mesh* mesh=m_finleyMesh.get();
2272       return Finley_Mesh_isValidTagName(mesh,name.c_str());
2273    }
2274    
2275    string MeshAdapter::showTagNames() const
2276    {
2277       stringstream temp;
2278       Finley_Mesh* mesh=m_finleyMesh.get();
2279       Finley_TagMap* tag_map=mesh->TagMap;
2280       while (tag_map) {
2281          temp << tag_map->name;
2282          tag_map=tag_map->next;
2283          if (tag_map) temp << ", ";
2284       }
2285       return temp.str();
2286    }
2287    
2288    int MeshAdapter::getNumberOfTagsInUse(int functionSpaceCode) const
2289    {
2290      Finley_Mesh* mesh=m_finleyMesh.get();
2291      dim_t numTags=0;
2292      switch(functionSpaceCode) {
2293       case(Nodes):
2294              numTags=mesh->Nodes->numTagsInUse;
2295            break;            break;
2296         case(Elements):     case(ReducedNodes):
2297         case(FaceElements):            throw FinleyAdapterException("Error - ReducedNodes does not support tags");
2298         case(Points):            break;
2299         case(ContactElementsZero):     case(DegreesOfFreedom):
2300         case(ContactElementsOne):            throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
2301            return true;            break;
2302       case(ReducedDegreesOfFreedom):
2303              throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
2304            break;            break;
2305         default:     case(Elements):
2306            Finley_ErrorCode=TYPE_ERROR;     case(ReducedElements):
2307            sprintf(Finley_ErrorMsg,"Cell: Finley does not know anything about function space type %d",functionSpaceCode);            numTags=mesh->Elements->numTagsInUse;
2308            break;            break;
2309       case(FaceElements):
2310       case(ReducedFaceElements):
2311              numTags=mesh->FaceElements->numTagsInUse;
2312              break;
2313       case(Points):
2314              numTags=mesh->Points->numTagsInUse;
2315              break;
2316       case(ContactElementsZero):
2317       case(ReducedContactElementsZero):
2318       case(ContactElementsOne):
2319       case(ReducedContactElementsOne):
2320              numTags=mesh->ContactElements->numTagsInUse;
2321              break;
2322       default:
2323          stringstream temp;
2324          temp << "Error - Finley does not know anything about function space type " << functionSpaceCode;
2325          throw FinleyAdapterException(temp.str());
2326    }    }
2327    checkFinleyError();    return numTags;
   return false;  
2328  }  }
2329  bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const  
2330    const int* MeshAdapter::borrowListOfTagsInUse(int functionSpaceCode) const
2331  {  {
2332    switch(functionSpaceType_source) {    Finley_Mesh* mesh=m_finleyMesh.get();
2333       case(Nodes):    index_t* tags=NULL;
2334          switch(functionSpaceType_target) {    switch(functionSpaceCode) {
2335             case(Nodes):     case(Nodes):
2336             case(ReducedDegreesOfFreedom):            tags=mesh->Nodes->tagsInUse;
2337             case(DegreesOfFreedom):            break;
2338             case(Elements):     case(ReducedNodes):
2339             case(FaceElements):            throw FinleyAdapterException("Error - ReducedNodes does not support tags");
2340             case(Points):            break;
2341             case(ContactElementsZero):     case(DegreesOfFreedom):
2342             case(ContactElementsOne):            throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
2343                 return true;            break;
2344             default:     case(ReducedDegreesOfFreedom):
2345                 Finley_ErrorCode=TYPE_ERROR;            throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
2346                 sprintf(Finley_ErrorMsg,"Interpolation On Domain: Finley does not know anything about function space type %d",functionSpaceType_target);            break;
2347          }     case(Elements):
2348          break;     case(ReducedElements):
2349       case(Elements):            tags=mesh->Elements->tagsInUse;
2350          if (functionSpaceType_target==Elements) {            break;
2351             return true;     case(FaceElements):
2352          } else {     case(ReducedFaceElements):
2353             return false;            tags=mesh->FaceElements->tagsInUse;
2354          }            break;
2355       case(FaceElements):     case(Points):
2356          if (functionSpaceType_target==FaceElements) {            tags=mesh->Points->tagsInUse;
2357             return true;            break;
2358          } else {     case(ContactElementsZero):
2359             return false;     case(ReducedContactElementsZero):
2360          }     case(ContactElementsOne):
2361       case(Points):     case(ReducedContactElementsOne):
2362          if (functionSpaceType_target==Points) {            tags=mesh->ContactElements->tagsInUse;
2363             return true;            break;
2364          } else {     default:
2365             return false;        stringstream temp;
2366          }        temp << "Error - Finley does not know anything about function space type " << functionSpaceCode;
2367       case(ContactElementsZero):        throw FinleyAdapterException(temp.str());
      case(ContactElementsOne):  
         if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {  
            return true;  
         } else {  
            return false;  
         }  
      case(DegreesOfFreedom):  
         switch(functionSpaceType_target) {  
            case(ReducedDegreesOfFreedom):  
            case(DegreesOfFreedom):  
            case(Nodes):  
            case(Elements):  
            case(FaceElements):  
            case(Points):  
            case(ContactElementsZero):  
            case(ContactElementsOne):  
               return true;  
            default:  
              Finley_ErrorCode=TYPE_ERROR;  
              sprintf(Finley_ErrorMsg,"Interpolation On Domain: Finley does not know anything about function space type %d",functionSpaceType_target);  
         }  
         break;  
      case(ReducedDegreesOfFreedom):  
        switch(functionSpaceType_target) {  
           case(ReducedDegreesOfFreedom):  
           case(Nodes):  
           case(Elements):  
           case(FaceElements):  
           case(Points):  
           case(ContactElementsZero):  
           case(ContactElementsOne):  
               return true;  
           case(DegreesOfFreedom):  
              return false;  
           default:  
              Finley_ErrorCode=TYPE_ERROR;  
              sprintf(Finley_ErrorMsg,"Interpolation On Domain: Finley does not know anything about function space type %d",functionSpaceType_target);  
        }  
        break;  
      default:  
         Finley_ErrorCode=TYPE_ERROR;  
         sprintf(Finley_ErrorMsg,"Interpolation On Domain: Finley does not know anything about function space type %d",functionSpaceType_source);  
         break;  
2368    }    }
2369    checkFinleyError();    return tags;
   return false;  
2370  }  }
2371  bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const  
2372    
2373    bool MeshAdapter::canTag(int functionSpaceCode) const
2374  {  {
2375      return false;    switch(functionSpaceCode) {
2376       case(Nodes):
2377       case(Elements):
2378       case(ReducedElements):
2379       case(FaceElements):
2380       case(ReducedFaceElements):
2381       case(Points):
2382       case(ContactElementsZero):
2383       case(ReducedContactElementsZero):
2384       case(ContactElementsOne):
2385       case(ReducedContactElementsOne):
2386              return true;
2387       case(ReducedNodes):
2388       case(DegreesOfFreedom):
2389       case(ReducedDegreesOfFreedom):
2390          return false;
2391       default:
2392        return false;
2393      }
2394  }  }
2395    
2396  bool MeshAdapter::operator==(const MeshAdapter& other) const  AbstractDomain::StatusType MeshAdapter::getStatus() const
2397  {  {
2398    return (m_finleyMesh==other.m_finleyMesh);    Finley_Mesh* mesh=m_finleyMesh.get();
2399      return Finley_Mesh_getStatus(mesh);
2400  }  }
2401    
2402  bool MeshAdapter::operator!=(const MeshAdapter& other) const  int MeshAdapter::getApproximationOrder(const int functionSpaceCode) const
2403  {  {
2404    return !operator==(other);    
2405      Finley_Mesh* mesh=m_finleyMesh.get();
2406      int order =-1;
2407      switch(functionSpaceCode) {
2408       case(Nodes):
2409       case(DegreesOfFreedom):
2410              order=mesh->approximationOrder;
2411              break;
2412       case(ReducedNodes):
2413       case(ReducedDegreesOfFreedom):
2414              order=mesh->reducedApproximationOrder;
2415              break;
2416       case(Elements):
2417       case(FaceElements):
2418       case(Points):
2419       case(ContactElementsZero):
2420       case(ContactElementsOne):
2421              order=mesh->integrationOrder;
2422              break;
2423       case(ReducedElements):
2424       case(ReducedFaceElements):
2425       case(ReducedContactElementsZero):
2426       case(ReducedContactElementsOne):
2427              order=mesh->reducedIntegrationOrder;
2428              break;
2429       default:
2430          stringstream temp;
2431          temp << "Error - Finley does not know anything about function space type " << functionSpaceCode;
2432          throw FinleyAdapterException(temp.str());
2433      }
2434      return order;
2435  }  }
2436    
2437  int MeshAdapter::getSystemMatrixTypeId(const int solver, const bool symmetry) const  bool MeshAdapter::supportsContactElements() const
2438  {  {
2439     int out=Finley_SystemMatrix_getSystemMatrixTypeId(solver,symmetry?1:0);    return true;
    checkFinleyError();  
    return out;  
2440  }  }
2441  Data MeshAdapter::getX() const  
2442    ReferenceElementSetWrapper::ReferenceElementSetWrapper(Finley_ElementTypeId id, index_t order, index_t reducedOrder)
2443  {  {
2444    return continuousFunction(asAbstractContinuousDomain()).getX();    m_refSet = Finley_ReferenceElementSet_alloc(id, order, reducedOrder);
2445  }  }
2446  Data MeshAdapter::getNormal() const  
2447    ReferenceElementSetWrapper::~ReferenceElementSetWrapper()
2448  {  {
2449    return functionOnBoundary(asAbstractContinuousDomain()).getNormal();    Finley_ReferenceElementSet_dealloc(m_refSet);
2450  }  }
2451  Data MeshAdapter::getSize() const  
2452    // points will be flattened
2453    void MeshAdapter:: addDiracPoints(const std::vector<double>& points, const std::vector<int>& tags) const
2454  {  {
2455    return function(asAbstractContinuousDomain()).getSize();        const int dim = getDim();
2456          int numPoints=points.size()/dim;
2457          int numTags=tags.size();
2458          Finley_Mesh* mesh=m_finleyMesh.get();
2459          
2460          if ( points.size() % dim != 0 )
2461          {
2462        throw FinleyAdapterException("Error - number of coords does not appear to be a multiple of dimension.");
2463          }
2464          
2465          if  ( (numTags > 0) && ( numPoints !=  numTags ) )
2466         throw FinleyAdapterException("Error - if tags are given number of tags and points must match.");
2467          
2468          double* points_ptr=TMPMEMALLOC(numPoints * dim, double);
2469          int*    tags_ptr= TMPMEMALLOC(numPoints, int);
2470          
2471          for (int i=0;i<numPoints;++i) {
2472           points_ptr[ i * dim     ] = points[i * dim ];
2473           if ( dim > 1 ) points_ptr[ i * dim + 1 ] = points[i * dim + 1];
2474           if ( dim > 2 ) points_ptr[ i * dim + 2 ] = points[i * dim + 2];    
2475               tags_ptr[i]=tags[i];
2476          }
2477          
2478          Finley_Mesh_addPoints(mesh, numPoints, points_ptr, tags_ptr);
2479          checkFinleyError();
2480          
2481          TMPMEMFREE(points_ptr);
2482          TMPMEMFREE(tags_ptr);
2483  }  }
2484    
2485    
2486    // void MeshAdapter:: addDiracPoints(const boost::python::list& points, const boost::python::list& tags) const
2487    // {
2488    //       const int dim = getDim();
2489    //       int numPoints=boost::python::extract<int>(points.attr("__len__")());
2490    //       int numTags=boost::python::extract<int>(tags.attr("__len__")());
2491    //       Finley_Mesh* mesh=m_finleyMesh.get();
2492    //      
2493    //       if  ( (numTags > 0) && ( numPoints !=  numTags ) )
2494    //   throw FinleyAdapterException("Error - if tags are given number of tags and points must match.");
2495    //      
2496    //       double* points_ptr=TMPMEMALLOC(numPoints * dim, double);
2497    //       int*    tags_ptr= TMPMEMALLOC(numPoints, int);
2498    //      
2499    //       for (int i=0;i<numPoints;++i) {
2500    //     int tag_id=-1;
2501    //     int numComps=boost::python::extract<int>(points[i].attr("__len__")());
2502    //     if  ( numComps !=   dim ) {
2503    //                stringstream temp;            
2504    //                temp << "Error - illegal number of components " << numComps << " for point " << i;              
2505    //                throw FinleyAdapterException(temp.str());
2506    //     }
2507    //     points_ptr[ i * dim     ] = boost::python::extract<double>(points[i][0]);
2508    //     if ( dim > 1 ) points_ptr[ i * dim + 1 ] = boost::python::extract<double>(points[i][1]);
2509    //     if ( dim > 2 ) points_ptr[ i * dim + 2 ] = boost::python::extract<double>(points[i][2]);
2510    //    
2511    //     if ( numTags > 0) {
2512    //            boost::python::extract<string> ex_str(tags[i]);
2513    //        if  ( ex_str.check() ) {
2514    //            tag_id=getTag( ex_str());
2515    //        } else {
2516    //             boost::python::extract<int> ex_int(tags[i]);
2517    //             if ( ex_int.check() ) {
2518    //                 tag_id=ex_int();
2519    //             } else {
2520    //              stringstream temp;          
2521    //                  temp << "Error - unable to extract tag for point " << i;
2522    //              throw FinleyAdapterException(temp.str());
2523    //            }
2524    //        }
2525    //     }      
2526    //            tags_ptr[i]=tag_id;
2527    //       }
2528    //      
2529    //       Finley_Mesh_addPoints(mesh, numPoints, points_ptr, tags_ptr);
2530    //       checkPasoError();
2531    //      
2532    //       TMPMEMFREE(points_ptr);
2533    //       TMPMEMFREE(tags_ptr);
2534    // }
2535    
2536    /*
2537    void MeshAdapter:: addDiracPoint( const boost::python::list& point, const int tag) const
2538    {  
2539        boost::python::list points =  boost::python::list();
2540        boost::python::list tags =  boost::python::list();
2541        points.append(point);
2542        tags.append(tag);
2543        addDiracPoints(points, tags);
2544    }
2545    */
2546    
2547    /*
2548    void MeshAdapter:: addDiracPointWithTagName( const boost::python::list& point, const std::string& tag) const
2549    {
2550            boost::python::list points =   boost::python::list();
2551            boost::python::list tags =   boost::python::list();
2552            points.append(point);
2553            tags.append(tag);
2554            addDiracPoints(points, tags);
2555    }
2556    */
2557  }  // end of namespace  }  // end of namespace

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