/[escript]/trunk/finley/src/CPPAdapter/finleycpp.cpp
ViewVC logotype

Annotation of /trunk/finley/src/CPPAdapter/finleycpp.cpp

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1811 - (hide annotations)
Thu Sep 25 23:11:13 2008 UTC (10 years, 6 months ago) by ksteube
File size: 6864 byte(s)
Copyright updated in all files

1 jgs 102
2 ksteube 1312 /*******************************************************
3 ksteube 1811 *
4     * Copyright (c) 2003-2008 by University of Queensland
5     * Earth Systems Science Computational Center (ESSCC)
6     * http://www.uq.edu.au/esscc
7     *
8     * Primary Business: Queensland, Australia
9     * Licensed under the Open Software License version 3.0
10     * http://www.opensource.org/licenses/osl-3.0.php
11     *
12     *******************************************************/
13 ksteube 1312
14 ksteube 1811
15 ksteube 817 #ifdef PASO_MPI
16     #include <mpi.h>
17 ksteube 1800 #include "paso/Paso_MPI.h"
18 ksteube 817 #endif
19 jgs 102 extern "C" {
20 robwdcock 682 #include "../Finley.h"
21 jgs 102 }
22 jgs 472
23 jgs 203 #include "MeshAdapter.h"
24     #include "MeshAdapterFactory.h"
25     #include "SystemMatrixAdapter.h"
26 gross 1364 #include "TransportProblemAdapter.h"
27 jgs 102
28 gross 727 #include "FinleyAdapterException.h"
29     // #include "esysUtils/EsysException.h"
30 robwdcock 682 #include "esysUtils/esysExceptionTranslator.h"
31 jgs 102
32 robwdcock 682 #include "escript/AbstractContinuousDomain.h"
33 jgs 102
34     #include <boost/python.hpp>
35     #include <boost/python/module.hpp>
36     #include <boost/python/def.hpp>
37     #include <boost/python/detail/defaults_gen.hpp>
38    
39     using namespace boost::python;
40    
41     /**
42 jgs 121 \page finley Finley
43     Finley is the python module name that contains the interfaces
44 jgs 102 to the C++ wrapper to finley.
45    
46 jgs 121 \version 1.0.0
47 jgs 102
48 jgs 121 \section class_desc Class Description:
49 jgs 102 Data
50    
51 jgs 121 \section class_limits Class Limitations:
52 jgs 102 None
53    
54 jgs 121 \section class_conds Class Conditions of Use:
55 jgs 102 None
56    
57 jgs 121 \section throws Throws:
58 jgs 102 None
59    
60     */
61    
62     //
63     // The BOOST_PYTHON_FUNCTION_OVERLOADS macro generates function overloads for optional
64     // arguments to the respective finley functions.
65     // !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
66     //
67     // NOTE: If the number of arguments to the finley functions change
68     // the magic numbers in the BOOST_PYTHON_FUNCTION_OVERLOADS call
69     // must change.
70     //
71     // !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
72     // BOOST_PYTHON_FUNCTION_OVERLOADS(readMesh_overloads,finley::readMesh,1,2)
73     // BOOST_PYTHON_FUNCTION_OVERLOADS(brick_overloads,finley::brick,0,12)
74     // BOOST_PYTHON_FUNCTION_OVERLOADS(rectangle_overloads,finley::rectangle,0,9)
75     // BOOST_PYTHON_FUNCTION_OVERLOADS(interval_overloads,finley::interval,0,6)
76     // BOOST_PYTHON_FUNCTION_OVERLOADS(glueFaces_overloads,finley::glueFaces,1,3)
77     // BOOST_PYTHON_FUNCTION_OVERLOADS(joinFaces_overloads,finley::joinFaces,1,3)
78    
79     BOOST_PYTHON_MODULE(finleycpp)
80     {
81    
82     //
83     // NOTE: The return_value_policy is necessary for functions that
84     // return pointers.
85 gross 1382 //
86     register_exception_translator<finley::FinleyAdapterException>(&(esysUtils::esysExceptionTranslator));
87 jgs 102
88 ksteube 1345 def("LoadMesh",finley::loadMesh,
89 ksteube 1312 (arg("fileName")="file.nc"),
90     return_value_policy<manage_new_object>());
91 jgs 102 def("ReadMesh",finley::readMesh,
92 ksteube 1312 (arg("fileName")="file.fly",arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true),
93 jgs 102 return_value_policy<manage_new_object>());
94    
95 gross 934 def("ReadGmsh",finley::readGmsh,
96 ksteube 1312 (arg("fileName")="file.msh",arg("numDim"), arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true),
97 gross 934 return_value_policy<manage_new_object>());
98    
99 jgs 102 def ("Brick",finley::brick,
100     (arg("n0")=1,arg("n1")=1,arg("n2")=1,
101     arg("order")=1,
102     arg("l0")=1.0,arg("l1")=1.0,arg("l2")=1.0,
103     arg("periodic0")=false,arg("periodic1")=false,arg("periodic2")=false,
104 gross 1059 arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1,
105 ksteube 1312 arg("useElementsOnFace")=false,
106     arg("useFullElementOrder")=false,
107     arg("optimize")=false),
108 jgs 102 return_value_policy<manage_new_object>());
109    
110     def ("Rectangle",finley::rectangle,
111     (arg("n0")=1,arg("n1")=1,arg("order")=1,
112     arg("l0")=1.0,arg("l1")=1.0,
113     arg("periodic0")=false,arg("periodic1")=false,
114 gross 1059 arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1,
115 ksteube 1312 arg("useElementsOnFace")=false,
116     arg("useFullElementOrder")=false,
117     arg("optimize")=false),
118 jgs 102 return_value_policy<manage_new_object>());
119    
120 jgs 110 def("Merge",finley::meshMerge,
121     return_value_policy<manage_new_object>());
122    
123 jgs 102 def("GlueFaces",finley::glueFaces,
124     (arg("safetyFactor")=0.2,
125 gross 1062 arg("tolerance")=1.e-8,
126 ksteube 1312 arg("optimize")=true),
127 jgs 102 return_value_policy<manage_new_object>());
128    
129     def("JoinFaces",finley::joinFaces,
130     (arg("safetyFactor")=0.2,
131 gross 1062 arg("tolerance")=1.e-8,
132 ksteube 1312 arg("optimize")=true),
133 jgs 102 return_value_policy<manage_new_object>());
134    
135    
136 gross 1361
137 jgs 102 class_<finley::MeshAdapter, bases<escript::AbstractContinuousDomain> >
138     ("MeshAdapter",init<optional <Finley_Mesh*> >())
139     .def(init<const finley::MeshAdapter&>())
140     .def("write",&finley::MeshAdapter::write)
141 ksteube 1339 .def("print_mesh_info",&finley::MeshAdapter::Print_Mesh_Info,(arg("full")=false))
142 ksteube 1343 .def("dump",&finley::MeshAdapter::dump)
143 jgs 102 .def("getDescription",&finley::MeshAdapter::getDescription)
144     .def("getDim",&finley::MeshAdapter::getDim)
145     .def("getDataShape",&finley::MeshAdapter::getDataShape)
146 ksteube 1754 .def("getNumDataPointsGlobal",&finley::MeshAdapter::getNumDataPointsGlobal)
147 jgs 102 .def("addPDEToSystem",&finley::MeshAdapter::addPDEToSystem)
148 gross 1204 .def("addPDEToLumpedSystem",&finley::MeshAdapter::addPDEToLumpedSystem)
149 jgs 102 .def("addPDEToRHS",&finley::MeshAdapter::addPDEToRHS)
150 gross 1370 .def("addPDEToTransportProblem",&finley::MeshAdapter::addPDEToTransportProblem)
151 jgs 102 .def("newOperator",&finley::MeshAdapter::newSystemMatrix)
152 gross 1370 .def("newTransportProblem",&finley::MeshAdapter::newTransportProblem)
153 jgs 102 .def("getSystemMatrixTypeId",&finley::MeshAdapter::getSystemMatrixTypeId)
154 jgs 110 .def("setX",&finley::MeshAdapter::setNewX)
155 jgs 102 .def("getX",&finley::MeshAdapter::getX)
156     .def("getNormal",&finley::MeshAdapter::getNormal)
157 jgs 153 .def("getSize",&finley::MeshAdapter::getSize)
158     .def("saveDX",&finley::MeshAdapter::saveDX)
159 gross 1044 .def("saveVTK",&finley::MeshAdapter::saveVTK)
160     .def("setTagMap",&finley::MeshAdapter::setTagMap)
161     .def("getTag",&finley::MeshAdapter::getTag)
162     .def("isValidTagName",&finley::MeshAdapter::isValidTagName)
163 ksteube 1312 .def("showTagNames",&finley::MeshAdapter::showTagNames)
164     .def("getMPISize",&finley::MeshAdapter::getMPISize)
165 ksteube 1801 .def("getMPIRank",&finley::MeshAdapter::getMPIRank);
166 jgs 102
167     class_<finley::SystemMatrixAdapter, bases<escript::AbstractSystemMatrix> >
168     ("OperatorAdapter",no_init)
169 ksteube 1339 .def("print_matrix_info",&finley::SystemMatrixAdapter::Print_Matrix_Info,(arg("full")=false))
170 jgs 102 .def("nullifyRowsAndCols",&finley::SystemMatrixAdapter::nullifyRowsAndCols)
171 jgs 149 .def("resetValues",&finley::SystemMatrixAdapter::resetValues)
172 jgs 123 .def("saveMM",&finley::SystemMatrixAdapter::saveMM)
173     .def("saveHB",&finley::SystemMatrixAdapter::saveHB);
174 jgs 102
175 gross 1364 class_<finley::TransportProblemAdapter, bases<escript::AbstractTransportProblem> >
176 gross 1417 ("TransportProblemAdapter",no_init)
177 gross 1407 .def("getSafeTimeStepSize",&finley::TransportProblemAdapter::getSafeTimeStepSize)
178 gross 1364 .def("resetTransport",&finley::TransportProblemAdapter::resetTransport);
179 jgs 102 }

Properties

Name Value
svn:eol-style native
svn:keywords Author Date Id Revision

  ViewVC Help
Powered by ViewVC 1.1.26