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Revision 3991 - (view) (annotate) - [select for diffs]
Modified Tue Sep 25 23:52:22 2012 UTC (7 years ago) by caltinay
File length: 17530 byte(s)
Diff to previous 3981
Updated doxygen cfg file and made a few first changes to doco.


Revision 3981 - (view) (annotate) - [select for diffs]
Modified Fri Sep 21 02:47:54 2012 UTC (7 years ago) by jfenwick
File length: 17878 byte(s)
Diff to previous 3975
First pass of updating copyright notices

Revision 3975 - (view) (annotate) - [select for diffs]
Modified Thu Sep 20 01:54:06 2012 UTC (7 years ago) by caltinay
File length: 17759 byte(s)
Diff to previous 3911
Merged symbolic branch into trunk. Curious what daniel and spartacus have to
say...


Revision 3911 - (view) (annotate) - [select for diffs]
Modified Thu Jun 14 01:01:03 2012 UTC (7 years, 4 months ago) by jfenwick
File length: 17870 byte(s)
Diff to previous 3675
Copyright changes

Revision 3675 - (view) (annotate) - [select for diffs]
Modified Thu Nov 17 00:53:38 2011 UTC (7 years, 10 months ago) by jfenwick
File length: 17870 byte(s)
Diff to previous 3558
pasowrap joins the trunk.


Revision 3558 - (view) (annotate) - [select for diffs]
Modified Fri Aug 26 06:09:02 2011 UTC (8 years, 1 month ago) by jfenwick
File length: 17726 byte(s)
Diff to previous 3515
Merged changes from dirac.
Now the only way to add diracPoints is to use the constructor


Revision 3515 - (view) (annotate) - [select for diffs]
Modified Thu May 19 08:20:57 2011 UTC (8 years, 4 months ago) by gross
File length: 18337 byte(s)
Diff to previous 3379
some first work for DiracFunctions

Revision 3379 - (view) (annotate) - [select for diffs]
Modified Wed Nov 24 04:48:49 2010 UTC (8 years, 10 months ago) by gross
File length: 16811 byte(s)
Diff to previous 3259
some clarification on lumping

Revision 3259 - (view) (annotate) - [select for diffs]
Modified Mon Oct 11 01:48:14 2010 UTC (9 years ago) by jfenwick
File length: 16772 byte(s)
Diff to previous 2881
Merging dudley and scons updates from branches


Revision 2881 - (view) (annotate) - [select for diffs]
Modified Thu Jan 28 02:03:15 2010 UTC (9 years, 8 months ago) by jfenwick
File length: 16784 byte(s)
Diff to previous 2722
Don't panic.
Updating copyright stamps


Revision 2722 - (view) (annotate) - [select for diffs]
Modified Fri Oct 16 06:45:01 2009 UTC (10 years ago) by gross
File length: 16784 byte(s)
Diff to previous 2625
First steps towards macro elements. at the monent a  macro element is identical to its counterpart of 2nd order.





Revision 2625 - (view) (annotate) - [select for diffs]
Modified Fri Aug 21 06:30:25 2009 UTC (10 years, 1 month ago) by jfenwick
File length: 16204 byte(s)
Diff to previous 2548
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

Revision 2548 - (view) (annotate) - [select for diffs]
Modified Mon Jul 20 06:20:06 2009 UTC (10 years, 2 months ago) by jfenwick
File length: 7709 byte(s)
Diff to previous 2076
Updating copyright notices

Revision 2076 - (view) (annotate) - [select for diffs]
Modified Thu Nov 20 12:34:17 2008 UTC (10 years, 10 months ago) by phornby
File length: 7709 byte(s)
Diff to previous 2064

I may get into trouble for this.
boost-python 1.34 does have a docstring_options class,
but does not have a 3 argument constructor for
it. So the test has been modified to 


#if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)

If you wish to make things more delicate, one can define a 2 argument construction
of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly.

Hope that this has not broken anything for anyone else. The SVN logs suggest this is a
little fragile.....

Also, please be aware that much of our chemistry interface code, that we wish to use with
escript, makes extensive use of boost python.
Having two different boost versions mucking with the python interpreter sounds
like a really bad idea, I'm sure you'll agree.
The problem is that it is not a simple task for us to build new versions of boost-python
on all our platforms. Consequently, it would be nice to be informed when you guys
intend to upgrade a support library of this nature so that we can plan and allocate
resources to keep up.

Cheers.



Revision 2064 - (view) (annotate) - [select for diffs]
Modified Thu Nov 20 04:06:34 2008 UTC (10 years, 10 months ago) by jfenwick
File length: 7709 byte(s)
Diff to previous 2061
docstring_options was added in boost 1.34 - macro'd it out if you are 
compiling earlier than that.


Revision 2061 - (view) (annotate) - [select for diffs]
Modified Wed Nov 19 03:40:21 2008 UTC (10 years, 10 months ago) by jfenwick
File length: 7567 byte(s)
Diff to previous 1877
Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

Revision 1877 - (view) (annotate) - [select for diffs]
Modified Tue Oct 14 02:58:39 2008 UTC (11 years ago) by ksteube
File length: 7230 byte(s)
Diff to previous 1872
convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.

mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.

Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.

A more general solution might be possible in the future.


Revision 1872 - (view) (annotate) - [select for diffs]
Modified Mon Oct 13 00:18:55 2008 UTC (11 years ago) by jfenwick
File length: 7100 byte(s)
Diff to previous 1859
Closing the moreshared branch


Revision 1859 - (view) (annotate) - [select for diffs]
Modified Wed Oct 8 03:03:37 2008 UTC (11 years ago) by gross
File length: 7036 byte(s)
Diff to previous 1811
first version of testing for transport solver.

Revision 1811 - (view) (annotate) - [select for diffs]
Modified Thu Sep 25 23:11:13 2008 UTC (11 years ago) by ksteube
File length: 6864 byte(s)
Diff to previous 1807
Copyright updated in all files


Revision 1807 - (view) (annotate) - [select for diffs]
Modified Thu Sep 25 01:04:51 2008 UTC (11 years ago) by ksteube
File length: 6899 byte(s)
Diff to previous 1801
The new MPI parallel ReadMesh is now the default after having passed
all tests both with and without MPI.
If you have been using ReadMesh you should notice no difference.
If you were using ReadMeshMPI then change to ReadMesh.


Revision 1801 - (view) (annotate) - [select for diffs]
Modified Fri Sep 19 01:37:09 2008 UTC (11 years ago) by ksteube
File length: 7111 byte(s)
Diff to previous 1800
Fixed serialization of I/O for MPI...code didn't compile without MPI


Revision 1800 - (view) (annotate) - [select for diffs]
Modified Thu Sep 18 05:28:20 2008 UTC (11 years ago) by ksteube
File length: 7169 byte(s)
Diff to previous 1754
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().


Revision 1754 - (view) (annotate) - [select for diffs]
Modified Sun Sep 7 22:07:26 2008 UTC (11 years, 1 month ago) by ksteube
File length: 7084 byte(s)
Diff to previous 1417
Added new test suite run_inputOutput.py to systematically test I/O.
Can determine if two domains are same with Fourier analysis.
Added new method getNumDataPointsGlobal to return number of DPs of a distributed mesh.
Reading of tags in ReadMeshMPI failed occasionally, should be more robust now.


Revision 1417 - (view) (annotate) - [select for diffs]
Modified Mon Feb 25 04:45:48 2008 UTC (11 years, 7 months ago) by gross
File length: 7002 byte(s)
Diff to previous 1407
some more work on the transport solver.

Revision 1407 - (view) (annotate) - [select for diffs]
Modified Mon Feb 4 06:45:48 2008 UTC (11 years, 8 months ago) by gross
File length: 6998 byte(s)
Diff to previous 1388
new upwinding algorithm (still fails)

Revision 1388 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 07:45:58 2008 UTC (11 years, 9 months ago) by trankine
File length: 6910 byte(s)
Diff to previous 1387
And get the *(&(*&(* name right

Revision 1387 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 07:45:26 2008 UTC (11 years, 9 months ago) by trankine
Original Path: temp/finley/src/CPPAdapter/finleycpp.cpp
File length: 6910 byte(s)
Diff to previous 1384
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 02:29:38 2008 UTC (11 years, 9 months ago) by phornby
Original Path: temp_trunk_copy/finley/src/CPPAdapter/finleycpp.cpp
File length: 6910 byte(s)
Diff to previous 1382
Make a temp copy of the trunk before checking in the windows changes



Revision 1382 - (view) (annotate) - [select for diffs]
Modified Thu Jan 10 00:21:22 2008 UTC (11 years, 9 months ago) by gross
File length: 6910 byte(s)
Diff to previous 1370
some tests got deactivated. they are back now.

Revision 1370 - (view) (annotate) - [select for diffs]
Modified Wed Jan 2 09:21:43 2008 UTC (11 years, 9 months ago) by gross
File length: 7265 byte(s)
Diff to previous 1364
explicit upwinding scheme added.

Revision 1364 - (view) (annotate) - [select for diffs]
Modified Mon Dec 17 07:22:45 2007 UTC (11 years, 10 months ago) by gross
File length: 7103 byte(s)
Diff to previous 1361
finley interface to paso's transport solver added.

Revision 1361 - (view) (annotate) - [select for diffs]
Modified Fri Dec 14 09:26:51 2007 UTC (11 years, 10 months ago) by gross
File length: 6865 byte(s)
Diff to previous 1360
first steps towards a flux controlled transport solver.

Revision 1360 - (view) (annotate) - [select for diffs]
Modified Thu Dec 13 05:05:00 2007 UTC (11 years, 10 months ago) by ksteube
File length: 6863 byte(s)
Diff to previous 1345
Partial implementation of ReadMeshMPI.
Will eventually replace ReadMesh but for now has a different name.


Revision 1345 - (view) (annotate) - [select for diffs]
Modified Wed Nov 14 07:53:34 2007 UTC (11 years, 11 months ago) by ksteube
File length: 6651 byte(s)
Diff to previous 1343
Created LoadMesh to read a mesh from a distributed NetCDF file.
Can read nodes but not elements yet.


Revision 1343 - (view) (annotate) - [select for diffs]
Modified Wed Nov 14 02:48:02 2007 UTC (11 years, 11 months ago) by ksteube
File length: 6647 byte(s)
Diff to previous 1339
First cut implementation of mesh.dump() using NetCDF.  TagMap not
saved yet.  The code for Points probably works but has not been tested.


Revision 1339 - (view) (annotate) - [select for diffs]
Modified Wed Nov 7 01:53:12 2007 UTC (11 years, 11 months ago) by ksteube
File length: 6648 byte(s)
Diff to previous 1326
Modified scons target release_src to include lib/ and include/ since
their presence is required for a build.  Modified
mydomain.print_mesh_info(True) to include more useful info about a
distributed domain.  Added mypde.getOperator().print_matrix_info(True)
to tell about a distributed matrix.



Revision 1326 - (view) (annotate) - [select for diffs]
Modified Mon Oct 1 08:10:41 2007 UTC (12 years ago) by ksteube
File length: 6528 byte(s)
Diff to previous 1312
Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes.
Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.


Revision 1312 - (view) (annotate) - [select for diffs]
Modified Mon Sep 24 06:18:44 2007 UTC (12 years ago) by ksteube
File length: 6460 byte(s)
Diff to previous 1204
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.


Revision 1204 - (view) (annotate) - [select for diffs]
Modified Sat Jun 23 11:43:12 2007 UTC (12 years, 3 months ago) by gross
File length: 6884 byte(s)
Diff to previous 1107
a frame for an improved lumping procedure added.

Revision 1107 - (view) (annotate) - [select for diffs]
Modified Thu Apr 19 02:14:18 2007 UTC (12 years, 5 months ago) by gross
File length: 6806 byte(s)
Diff to previous 1062
Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.



Revision 1062 - (view) (annotate) - [select for diffs]
Modified Mon Mar 26 06:17:53 2007 UTC (12 years, 6 months ago) by gross
File length: 6784 byte(s)
Diff to previous 1059
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.

Revision 1059 - (view) (annotate) - [select for diffs]
Modified Fri Mar 23 11:01:53 2007 UTC (12 years, 6 months ago) by gross
File length: 6681 byte(s)
Diff to previous 1044
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.

Revision 1044 - (view) (annotate) - [select for diffs]
Modified Mon Mar 19 07:29:31 2007 UTC (12 years, 7 months ago) by gross
File length: 6537 byte(s)
Diff to previous 934
clear name tagging is supported now.

Revision 934 - (view) (annotate) - [select for diffs]
Modified Tue Jan 23 09:52:45 2007 UTC (12 years, 8 months ago) by gross
File length: 6303 byte(s)
Diff to previous 888
gmsh file reader for finley

Revision 888 - (view) (annotate) - [select for diffs]
Modified Tue Nov 7 08:31:26 2006 UTC (12 years, 11 months ago) by gross
File length: 6086 byte(s)
Diff to previous 817
Problem in Mesh_findMatchingFaces.c fixed:
default tolerance in python interface was set too tight.




Revision 817 - (view) (annotate) - [select for diffs]
Modified Sat Aug 26 03:08:52 2006 UTC (13 years, 1 month ago) by ksteube
File length: 6152 byte(s)
Diff to previous 727
Can now compile and run with MPI on shake71



Revision 727 - (view) (annotate) - [select for diffs]
Modified Fri May 12 06:31:06 2006 UTC (13 years, 5 months ago) by gross
File length: 6112 byte(s)
Diff to previous 682
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.



Revision 682 - (view) (annotate) - [select for diffs]
Modified Mon Mar 27 02:43:09 2006 UTC (13 years, 6 months ago) by robwdcock
File length: 6065 byte(s)
Diff to previous 474
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 474 - (view) (annotate) - [select for diffs]
Modified Mon Jan 30 04:23:44 2006 UTC (13 years, 8 months ago) by jgs
File length: 6034 byte(s)
Diff to previous 472
restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly


Revision 472 - (view) (annotate) - [select for diffs]
Modified Fri Jan 27 01:50:59 2006 UTC (13 years, 8 months ago) by jgs
File length: 6047 byte(s)
Diff to previous 471
rationalise all #includes


Revision 471 - (view) (annotate) - [select for diffs]
Modified Fri Jan 27 01:33:02 2006 UTC (13 years, 8 months ago) by jgs
File length: 6046 byte(s)
Diff to previous 468
reorganise finley src tree to remove inc dir and src/finley directory


Revision 468 - (view) (annotate) - [select for diffs]
Modified Wed Jan 25 06:50:39 2006 UTC (13 years, 8 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/finleycpp.cpp
File length: 6046 byte(s)
Diff to previous 203
reorganised esysUtils to remove inc directory

Revision 203 - (view) (annotate) - [select for diffs]
Modified Wed Nov 23 04:36:15 2005 UTC (13 years, 10 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/finleycpp.cpp
File length: 6066 byte(s)
Diff to previous 201
adjust include file names to allow for new finley source tree structure


Revision 201 - (view) (annotate) - [select for diffs]
Modified Wed Nov 23 04:10:21 2005 UTC (13 years, 10 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/finleycpp.cpp
File length: 6135 byte(s)
Diff to previous 155
copy finleyC and CPPAdapter to finley and finley/CPPAdapter to
facilitate scons builds


Revision 155 - (view) (annotate) - [select for diffs]
Modified Wed Nov 9 02:02:19 2005 UTC (13 years, 11 months ago) by jgs
File length: 6135 byte(s)
Diff to previous 153
move all directories from trunk/esys2 into trunk and remove esys2


Revision 153 - (view) (annotate) - [select for diffs]
Modified Tue Oct 25 01:51:20 2005 UTC (13 years, 11 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 6135 byte(s)
Diff to previous 149
Merge of development branch dev-02 back to main trunk on 2005-10-25


Revision 149 - (view) (annotate) - [select for diffs]
Modified Thu Sep 1 03:31:39 2005 UTC (14 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 6032 byte(s)
Diff to previous 123
Merge of development branch dev-02 back to main trunk on 2005-09-01


Revision 123 - (view) (annotate) - [select for diffs]
Modified Fri Jul 8 04:08:13 2005 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 6094 byte(s)
Diff to previous 121
Merge of development branch back to main trunk on 2005-07-08


Revision 121 - (view) (annotate) - [select for diffs]
Modified Fri May 6 04:26:16 2005 UTC (14 years, 5 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 6037 byte(s)
Diff to previous 110
Merge of development branch back to main trunk on 2005-05-06


Revision 110 - (view) (annotate) - [select for diffs]
Modified Mon Feb 14 04:14:42 2005 UTC (14 years, 8 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 5953 byte(s)
Diff to previous 108
*** empty log message ***


Revision 108 - (view) (annotate) - [select for diffs]
Modified Thu Jan 27 06:21:59 2005 UTC (14 years, 8 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 5821 byte(s)
Diff to previous 102
*** empty log message ***


Revision 102 - (view) (annotate) - [select for diffs]
Added Wed Dec 15 07:08:39 2004 UTC (14 years, 10 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 5753 byte(s)
*** empty log message ***


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