Log of /trunk/modellib

---

Revision 6651 - Directory Listing
Modified Wed Feb 7 02:12:08 2018 UTC (11 months, 1 week ago) by jfenwick

Make everyone sad by touching all the files

Copyright dates update

---

Revision 6647 - Directory Listing
Modified Thu Dec 7 06:52:32 2017 UTC (13 months, 2 weeks ago) by jfenwick

Sphinxing continues

---

Revision 6638 - Directory Listing
Modified Wed Dec 6 06:28:41 2017 UTC (13 months, 2 weeks ago) by jfenwick

More cleanup

This work consists of fixing formatting errors in doc strings
  and
converting from ... imports    into import ... as to reduce the namespace 
pollution which is confusing sphinx

---

Revision 6523 - Directory Listing
Modified Tue Mar 7 06:50:34 2017 UTC (22 months, 2 weeks ago) by jfenwick

UPDATE THE COPYRIGHT DATES

---

Revision 6325 - Directory Listing
Modified Thu Jun 23 09:12:54 2016 UTC (2 years, 6 months ago) by caltinay

oops, these tests use pde systems so can't use Amesos2 yet.

---

Revision 6321 - Directory Listing
Modified Thu Jun 23 05:38:50 2016 UTC (2 years, 6 months ago) by caltinay

feature #3: this should fix up remaining tests that only checked paso_direct.
I also moved paso_direct to 'hasFeature' as it's a boolean...

---

Revision 6226 - Directory Listing
Modified Fri May 27 02:55:38 2016 UTC (2 years, 7 months ago) by caltinay

fix modellib test to use feature checker for gmsh.

---

Revision 6174 - Directory Listing
Modified Fri Apr 15 03:41:03 2016 UTC (2 years, 9 months ago) by caltinay

Some reorganisation of EscriptParams and related changes.
We now distinguish between modifiable parameters and build features.
To interrogate the latter use:
escript::hasFeature()  [ python: escript.hasFeature() ]
and
escript::listFeatures() [ python: escript.listFeatures() ]

I have decided to add specific getters for the remaining few parameters to
avoid the penalty of string comparisons and to remove the wealth of friend
declarations with Data* classes.

Also made some changes in SConstruct to make sure we set *all* preprocessor
directives *before* building anything.

Still to do is dealing with checks for direct solver and gmsh. The latter needs
to be a runtime check rather than a compile time check.

---

Revision 6112 - Directory Listing
Modified Thu Mar 31 09:40:10 2016 UTC (2 years, 9 months ago) by jfenwick

Relicense all the things!

---

Revision 6034 - Directory Listing
Modified Wed Mar 9 00:37:57 2016 UTC (2 years, 10 months ago) by caltinay

a few changes to GroupTest / utest:
GroupTest class now takes a name parameter that is used as (shell) function
name in utest for the test group.
By default all tests are run as before but one can now do:
./utest.sh build '-t2' escriptcpp
to only run the escript c++ unit tests.
Also tweaked a couple things so utest.sh does now work with dash.

---

Revision 5863 - Directory Listing
Modified Wed Jan 13 02:25:48 2016 UTC (3 years ago) by jfenwick

Copyright dates updated.
\version for doxygen to read

---

Revision 5707 - Directory Listing
Modified Mon Jun 29 03:59:06 2015 UTC (3 years, 6 months ago) by sshaw

adding copyright headers to files without copyright info, moved header to top of file in some cases where it wasn't

---

Revision 5706 - Directory Listing
Modified Mon Jun 29 03:41:36 2015 UTC (3 years, 6 months ago) by sshaw

all python files now force use of python3 prints and division syntax to stop sneaky errors appearing in py3 environs

---

Revision 5685 - Directory Listing
Modified Wed Jun 24 04:53:16 2015 UTC (3 years, 6 months ago) by sshaw

no more unexpected multi-process DIRECT exceptions in tests, no more unexpected direct solver missing exceptions in tests

---

Revision 5593 - Directory Listing
Modified Fri Apr 24 01:36:26 2015 UTC (3 years, 8 months ago) by jfenwick

Fixing institution name to comply with policy

---

Revision 5448 - Directory Listing
Modified Fri Feb 6 05:31:37 2015 UTC (3 years, 11 months ago) by jfenwick

Updating all the dates

---

Revision 5288 - Directory Listing
Modified Tue Dec 2 23:18:40 2014 UTC (4 years, 1 month ago) by sshaw

fixing tests for cases where required domains not built

---

Revision 5080 - Directory Listing
Modified Wed Jun 25 02:50:56 2014 UTC (4 years, 6 months ago) by sshaw

more StringIO replacements for py3 compatibility

---

Revision 5078 - Directory Listing
Modified Tue Jun 24 06:50:21 2014 UTC (4 years, 6 months ago) by sshaw

fixing silly leftovers that were missed in previous commits

---

Revision 5076 - Directory Listing
Modified Tue Jun 24 03:41:42 2014 UTC (4 years, 6 months ago) by sshaw

more python3 compatibility fixes

---

Revision 5074 - Directory Listing
Modified Tue Jun 24 00:44:50 2014 UTC (4 years, 6 months ago) by sshaw

python3 compatibility fix

---

Revision 5047 - Directory Listing
Modified Fri Jun 13 05:12:03 2014 UTC (4 years, 7 months ago) by sshaw

removing dumb 'False and' that was leftover

---

Revision 5041 - Directory Listing
Modified Thu Jun 12 05:28:22 2014 UTC (4 years, 7 months ago) by sshaw

fixed domainreader test sillyness and moved gmsh detection into testfile from SConscript

---

Revision 5024 - Directory Listing
Modified Tue Jun 10 08:46:07 2014 UTC (4 years, 7 months ago) by jfenwick

Fixing more == None

---

Revision 5017 - Directory Listing
Modified Tue Jun 10 02:16:18 2014 UTC (4 years, 7 months ago) by sshaw

scons now runs tests via a testrunner to collect lists of skipped tests in build/ (examples have their own builder since they aren't unit tests)
fixed hessian regularisation tests falling over by adding a shortcircuit optional arg that returns the pde, not the solution
added missing/omitted tests back into scons tests

---

Revision 4821 - Directory Listing
Modified Tue Apr 1 04:58:33 2014 UTC (4 years, 9 months ago) by sshaw

moved SolverOptions to c++, split into SolverOptions for the options and SolverBuddy as the state as a precursor to per-pde solving... does break some use cases (e.g. pde.getSolverOptions().DIRECT will now fail, new value access is with SolverOptions.DIRECT), examples and documentation updated to match

---

Revision 4657 - Directory Listing
Modified Thu Feb 6 06:12:20 2014 UTC (4 years, 11 months ago) by jfenwick

I changed some files.
Updated copyright notices, added GeoComp.

---

Revision 4576 - Directory Listing
Modified Mon Dec 9 23:35:30 2013 UTC (5 years, 1 month ago) by sshaw

python3ified things, replaced mixed whitespace and xrange calls

---

Revision 4509 - Directory Listing
Modified Wed Jul 24 08:37:29 2013 UTC (5 years, 5 months ago) by jfenwick

Fixed paths for utest.sh

---

Revision 4406 - Directory Listing
Modified Tue May 14 02:54:09 2013 UTC (5 years, 8 months ago) by caltinay

Removed references to pyvisi which disappeared a few releases ago...

---

Revision 4295 - Directory Listing
Modified Fri Mar 8 04:42:01 2013 UTC (5 years, 10 months ago) by caltinay

de-cluttered sconstruct a bit and fixed a script.

---

Revision 4285 - Directory Listing
Modified Thu Mar 7 01:08:43 2013 UTC (5 years, 10 months ago) by caltinay

Corrected some spelling.

---

Revision 4154 - Directory Listing
Modified Tue Jan 22 09:30:23 2013 UTC (6 years ago) by jfenwick

Round 1 of copyright fixes

---

Revision 4096 - Directory Listing
Modified Thu Dec 6 04:05:29 2012 UTC (6 years, 1 month ago) by jfenwick

temporary doc fixes and moving tsunami out of the way

---

Revision 4078 - Directory Listing
Modified Fri Nov 16 07:50:49 2012 UTC (6 years, 2 months ago) by jfenwick

Unit tests for binary install with no scons and no source tree.
Script for installing and testing a .deb within a chroot.

---

Revision 4040 - Directory Listing
Modified Sun Oct 28 22:37:45 2012 UTC (6 years, 2 months ago) by jfenwick

Some py3 changes that didn't get committed for some reason

---

Revision 4004 - Directory Listing
Modified Fri Sep 28 04:45:25 2012 UTC (6 years, 3 months ago) by caltinay

don't use escript.escript.Data...

---

Revision 3982 - Directory Listing
Modified Fri Sep 21 03:23:22 2012 UTC (6 years, 4 months ago) by jfenwick

More edits + removing pyvisi from trunk

---

Revision 3981 - Directory Listing
Modified Fri Sep 21 02:47:54 2012 UTC (6 years, 4 months ago) by jfenwick

First pass of updating copyright notices

---

Revision 3940 - Directory Listing
Modified Thu Jul 26 05:54:58 2012 UTC (6 years, 5 months ago) by jfenwick

Disabling tests which do not allow MPI
Previously we allowed these if there was only one rank

---

Revision 3911 - Directory Listing
Modified Thu Jun 14 01:01:03 2012 UTC (6 years, 7 months ago) by jfenwick

Copyright changes

---

Revision 3892 - Directory Listing
Modified Tue Apr 10 08:57:23 2012 UTC (6 years, 9 months ago) by jfenwick

Merged changes across from the attempt2 branch.
This version builds and passes python2 tests.
It also passes most python3 tests.

---

Revision 3586 - Directory Listing
Modified Fri Sep 9 04:02:29 2011 UTC (7 years, 4 months ago) by caltinay

run_domainreaders now passes some parameters to the constructors so
kwargs is tested to be working. Addresses #578.

---

Revision 3463 - Directory Listing
Modified Mon Feb 7 02:09:57 2011 UTC (7 years, 11 months ago) by caltinay

Check for gmsh in main SConstruct file and skip tests that depend on it when
the executable is not found.

---

Revision 3444 - Directory Listing
Modified Tue Jan 18 23:17:27 2011 UTC (8 years ago) by gross

run_domainreaders.py can only be run for MPI ranks = 1 as gmsh does not support MPI yet

---

Revision 3432 - Directory Listing
Modified Fri Jan 7 01:32:07 2011 UTC (8 years ago) by jfenwick

Made import statements a bit more specific to clean up the epydoc

---

Revision 3428 - Directory Listing
Modified Thu Jan 6 01:12:36 2011 UTC (8 years ago) by jfenwick

Fixed errors (and space/tabs) in geometry.py
Added unit tests

---

Revision 3423 - Directory Listing
Modified Thu Dec 16 04:24:13 2010 UTC (8 years, 1 month ago) by jfenwick

Fix a typo in geometry.py

---

Revision 3354 - Directory Listing
Modified Tue Nov 16 04:48:09 2010 UTC (8 years, 2 months ago) by jfenwick

Fix problem with superclass init

---

Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (8 years, 2 months ago) by caltinay

escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.

---

Revision 3346 - Directory Listing
Modified Fri Nov 12 01:19:02 2010 UTC (8 years, 2 months ago) by caltinay

Replaced usage of esys.escript.util.saveVTK by weipa.saveVTK in all python
scripts.

---

Revision 3344 - Directory Listing
Modified Thu Nov 11 23:26:52 2010 UTC (8 years, 2 months ago) by caltinay

Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK

---

Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (8 years, 3 months ago) by jfenwick

Merging dudley and scons updates from branches

---

Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (8 years, 5 months ago) by jfenwick

Switched the build_dir keyword param to variant_dir.
Should fix issue 525.

---

Revision 3014 - Directory Listing
Modified Wed Apr 28 04:05:21 2010 UTC (8 years, 8 months ago) by gross

a more stable handling of divergence in the CN or BE

---

Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (8 years, 11 months ago) by jfenwick

Don't panic.
Updating copyright stamps

---

Revision 2625 - Directory Listing
Modified Fri Aug 21 06:30:25 2009 UTC (9 years, 5 months ago) by jfenwick

Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

---

Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (9 years, 6 months ago) by jfenwick

Remainder of copyright date fixes

---

Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (9 years, 6 months ago) by jfenwick

Updating copyright notices

---

Revision 2516 - Directory Listing
Modified Fri Jul 3 02:51:05 2009 UTC (9 years, 6 months ago) by gross

files are not needed anymore.

---

Revision 2474 - Directory Listing
Modified Tue Jun 16 06:32:15 2009 UTC (9 years, 7 months ago) by gross

linearPDEs has is now using the SolverOptions class to talk to PASO

---

Revision 2468 - Directory Listing
Modified Thu Jun 11 02:55:51 2009 UTC (9 years, 7 months ago) by gross

some more work toward numpy

---

Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (9 years, 7 months ago) by jfenwick

Merging changes from numpy branch.

---

Revision 2416 - Directory Listing
Modified Wed May 13 06:03:59 2009 UTC (9 years, 8 months ago) by gross

* fix Windows MPI case: export system variables
* define ESCRIPT_NUM_PROC and ESCRIPT_NUM_NODES
* cleanup using os.path.join()

---

Revision 2344 - Directory Listing
Modified Mon Mar 30 02:13:58 2009 UTC (9 years, 9 months ago) by jfenwick

Change __url__ to launchpad site

---

Revision 2262 - Directory Listing
Modified Wed Feb 11 01:58:06 2009 UTC (9 years, 11 months ago) by jfenwick

Create missing directory in script.

---

Revision 2236 - Directory Listing
Modified Tue Feb 3 06:13:50 2009 UTC (9 years, 11 months ago) by gross

switch to relative tolerance in face detection

---

Revision 2235 - Directory Listing
Modified Tue Feb 3 01:47:47 2009 UTC (9 years, 11 months ago) by jfenwick

Added support for generating non-scons test scripts

---

Revision 2067 - Directory Listing
Modified Thu Nov 20 06:22:56 2008 UTC (10 years, 2 months ago) by caltinay

Moved 'make dir' operation to the correct spot and extended the number
of timesteps a bit.

---

Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (10 years, 2 months ago) by jfenwick

Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

---

Revision 2006 - Directory Listing
Modified Mon Nov 10 03:07:08 2008 UTC (10 years, 2 months ago) by jfenwick

Updating svn:ignore properties.

---

Revision 1989 - Directory Listing
Modified Fri Nov 7 04:11:33 2008 UTC (10 years, 2 months ago) by caltinay

modellib: completely revised tsunami script.
-updated finley usage (due to changed interface)
-moved VTK stuff to one place making it easy to disable (and use dumps instead)
-removed dependency on non-existing data server - script now depends on saved coastline/bathymetry data files OR calls scripts to create the data on the fly.
-PDE and triangulation code is unchanged except indentation updates

---

Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (10 years, 3 months ago) by ksteube

Copyright updated in all files

---

Revision 1809 - Directory Listing
Modified Thu Sep 25 06:43:44 2008 UTC (10 years, 3 months ago) by ksteube

Copyright updated in all python files

---

Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (10 years, 5 months ago) by ksteube

Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.

---

Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (11 years ago) by trankine

And get the *(&(*&(* name right

---

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (11 years ago) by trankine
Original Path: temp/modellib

Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

---

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (11 years ago) by phornby
Original Path: temp_trunk_copy/modellib

Make a temp copy of the trunk before checking in the windows changes

---

Revision 1381 - Directory Listing
Modified Wed Jan 9 07:59:15 2008 UTC (11 years ago) by gross

import sys missing

---

Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (11 years, 4 months ago) by ksteube

The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.

---

Revision 1152 - Directory Listing
Modified Thu May 17 04:46:04 2007 UTC (11 years, 8 months ago) by gross

some features for PMDCRC project

---

Revision 1137 - Directory Listing
Modified Thu May 10 08:11:31 2007 UTC (11 years, 8 months ago) by gross

This version passes the tests on windows except for 

   * vtk
   * netCDF

The version needs to be tested on altix and linux

---

Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (11 years, 8 months ago) by gross

Changes needed for windows. This still does not work on and has not run on linux and the altix. 
 
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf. 

 

---

Revision 1098 - Directory Listing
Modified Mon Apr 16 23:15:23 2007 UTC (11 years, 9 months ago) by gross

add a few #pragma ivdep which should speed up MV but cannot confiirm this on Pentium

---

Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (11 years, 10 months ago) by gross

clear name tagging is supported now.

---

Revision 1000 - Directory Listing
Modified Wed Feb 28 00:34:42 2007 UTC (11 years, 10 months ago) by gross

coulomb stress failure added

---

Revision 998 - Directory Listing
Modified Mon Feb 26 07:09:37 2007 UTC (11 years, 10 months ago) by gross

basic mine scenario

---

Revision 997 - Directory Listing
Modified Mon Feb 26 06:31:45 2007 UTC (11 years, 10 months ago) by gross

small small fixes in modellib

---

Revision 993 - Directory Listing
Modified Fri Feb 23 06:39:38 2007 UTC (11 years, 11 months ago) by gross

problem with undefined value fixed.

---

Revision 990 - Directory Listing
Modified Wed Feb 21 04:27:52 2007 UTC (11 years, 11 months ago) by ksteube

Cleaned up the python in-line doc to make epydoc work better

Configured for shake71 to find NetCDF libraries

---

Revision 987 - Directory Listing
Modified Tue Feb 20 06:19:30 2007 UTC (11 years, 11 months ago) by gross

file missing

---

Revision 986 - Directory Listing
Modified Tue Feb 20 06:18:52 2007 UTC (11 years, 11 months ago) by gross

first steps toward the model

---

Revision 982 - Directory Listing
Modified Mon Feb 19 23:55:52 2007 UTC (11 years, 11 months ago) by gross

data object load checks for sample  ordering now.

---

Revision 981 - Directory Listing
Modified Mon Feb 19 06:52:25 2007 UTC (11 years, 11 months ago) by gross

extraction records added

---

Revision 977 - Directory Listing
Modified Fri Feb 16 06:34:21 2007 UTC (11 years, 11 months ago) by gross

dion: this is for you.

---

Revision 953 - Directory Listing
Modified Fri Feb 9 08:55:28 2007 UTC (11 years, 11 months ago) by gross

TagMap is supported by modellib now

---

Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (11 years, 11 months ago) by gross

escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed. 

---

Revision 944 - Directory Listing
Modified Tue Jan 30 08:57:37 2007 UTC (11 years, 11 months ago) by gross

PropertySet added

---

Revision 941 - Directory Listing
Modified Mon Jan 29 04:07:58 2007 UTC (11 years, 11 months ago) by gross

small fix

---

Revision 938 - Directory Listing
Modified Thu Jan 25 03:40:54 2007 UTC (11 years, 11 months ago) by gross

the FinleyReade accepts now gmsh files (use format="gmsh")
and
Simulations are accepting Models only. Moreover, there is a test now
if a all Models targeted by a model in the simulation or a subsimulation
are included in  simulation or a subsimulation. 

---

Revision 927 - Directory Listing
Modified Fri Jan 12 06:32:08 2007 UTC (12 years ago) by gross

surfaces implemented by no testing yet

---

Revision 918 - Directory Listing
Modified Wed Jan 3 06:30:00 2007 UTC (12 years ago) by gross

fixes on ESySXML to get runmodel going.

    * object ids are now local for read and write of XML
    * ParameterSets are now written with class name
    * ParameterSets linked by other ParameterSets (previously only Models) are written now 
    * list are now lists of str (rather than bools), lists with bool, int or float are mapped to numarray
    * numarray are writen with generic types Bool, Int, Float (portability!)

---

Revision 917 - Directory Listing
Modified Tue Jan 2 02:46:53 2007 UTC (12 years ago) by gross

some EsysXML input files. rebuild still fails for these files

---

Revision 912 - Directory Listing
Modified Wed Dec 6 03:29:49 2006 UTC (12 years, 1 month ago) by gross

modellib.WriteVTK has been rewritten. Instead of only three data objects scalar,
vector, tensor it takes now up to 20 data objects data0 ... data19 and writes it into a 
single VTK file. There is also the possibilty to define individiual name tags name0,..., name19.
If no name is given the corresponding attribute name of the Link target is used. 
This simplifies the usage and increases efficiency.

---

Revision 911 - Directory Listing
Modified Tue Dec 5 23:39:39 2006 UTC (12 years, 1 month ago) by gross

*Constrainer models have been renamed to *ConstrainerOverBox to clarify the fact that they are only work over a box domain

---

Revision 908 - Directory Listing
Modified Thu Nov 23 06:39:39 2006 UTC (12 years, 2 months ago) by gross

some fixes

---

Revision 906 - Directory Listing
Modified Tue Nov 21 05:34:15 2006 UTC (12 years, 2 months ago) by gross

some minor fixes

---

Revision 904 - Directory Listing
Modified Fri Nov 17 08:49:44 2006 UTC (12 years, 2 months ago) by gross

MergeConstraints added

---

Revision 903 - Directory Listing
Modified Fri Nov 17 01:59:49 2006 UTC (12 years, 2 months ago) by gross

bug with tagged data in vtk and dx writer fixed

---

Revision 885 - Directory Listing
Modified Wed Nov 1 09:05:51 2006 UTC (12 years, 2 months ago) by gross

DataSource for modelib added

---

Revision 872 - Directory Listing
Modified Sun Oct 15 23:33:14 2006 UTC (12 years, 3 months ago) by gross

bla

---

Revision 850 - Directory Listing
Modified Sun Sep 17 23:27:00 2006 UTC (12 years, 4 months ago) by gross

some problems with vtk writer fixed

---

Revision 841 - Directory Listing
Modified Wed Sep 6 09:48:37 2006 UTC (12 years, 4 months ago) by gross

drucker-prager is working but I am not entirely happy yet as the step size control is very tight.

---

Revision 838 - Directory Listing
Modified Tue Sep 5 22:45:55 2006 UTC (12 years, 4 months ago) by gross

drucker prager works now but there is still some work on the stepsize control needed.

---

Revision 836 - Directory Listing
Modified Mon Sep 4 22:37:25 2006 UTC (12 years, 4 months ago) by gross

new implementation of the tangential operator and a restriction of time step size change added

---

Revision 834 - Directory Listing
Modified Fri Sep 1 09:05:16 2006 UTC (12 years, 4 months ago) by gross

chenges to drucker-prager

---

Revision 832 - Directory Listing
Modified Fri Sep 1 02:04:46 2006 UTC (12 years, 4 months ago) by gross

almost there

---

Revision 831 - Directory Listing
Modified Thu Aug 31 08:47:40 2006 UTC (12 years, 4 months ago) by gross

some more work to get the drucker-prager going

---

Revision 829 - Directory Listing
Modified Thu Aug 31 01:31:15 2006 UTC (12 years, 4 months ago) by gross

some changes on the drucker-prager (it does not work yet)

---

Revision 826 - Directory Listing
Modified Tue Aug 29 09:12:33 2006 UTC (12 years, 4 months ago) by gross

ken and I did not have a good afternoon. our checkin was very buggy. fixed

---

Revision 825 - Directory Listing
Modified Tue Aug 29 06:59:27 2006 UTC (12 years, 4 months ago) by gross

and more on Drucker Prager

---

Revision 823 - Directory Listing
Modified Tue Aug 29 02:05:59 2006 UTC (12 years, 4 months ago) by gross

geometry.py is back to the way it was.

---

Revision 821 - Directory Listing
Modified Mon Aug 28 08:36:30 2006 UTC (12 years, 4 months ago) by gross

and some more work on drucker-prager

---

Revision 820 - Directory Listing
Modified Mon Aug 28 06:55:36 2006 UTC (12 years, 4 months ago) by gross

make the modelframe test run

---

Revision 819 - Directory Listing
Modified Sun Aug 27 23:07:51 2006 UTC (12 years, 4 months ago) by gross

new version of FinleyReader etc. They can noe update node coordinates but have to be part of the Simulation

---

Revision 816 - Directory Listing
Modified Thu Aug 24 00:03:01 2006 UTC (12 years, 5 months ago) by gross

drucker prager in modellib (it does not work yet)

---

Revision 814 - Directory Listing
Modified Wed Aug 23 09:31:10 2006 UTC (12 years, 5 months ago) by gross

small bug in general tensor propduct fixed

---

Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (12 years, 5 months ago) by gross

Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.

---

Revision 729 - Directory Listing
Modified Mon May 15 03:16:53 2006 UTC (12 years, 8 months ago) by gross

cut down the number of time steps

---

Revision 728 - Directory Listing
Modified Mon May 15 02:01:18 2006 UTC (12 years, 8 months ago) by gross

modelframe test examples work now

---

Revision 720 - Directory Listing
Modified Thu Apr 27 10:16:05 2006 UTC (12 years, 8 months ago) by gross

formatting errors in epydoc tags fixed

---

Revision 709 - Directory Listing
Modified Wed Apr 26 06:35:36 2006 UTC (12 years, 8 months ago) by gross

fixes to get scons py_tests going: mainly fixes in the pathes

---

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (12 years, 9 months ago) by gross

latex build documentation is working now

---

Revision 706 - Directory Listing
Modified Sat Apr 8 16:13:02 2006 UTC (12 years, 9 months ago) by gross

python tests compile and run but there is still a problem with dependencies'

---

Revision 705 - Directory Listing
Modified Fri Apr 7 17:57:37 2006 UTC (12 years, 9 months ago) by gross

python tests are allmost working

---

Revision 703 - Directory Listing
Modified Thu Apr 6 02:20:47 2006 UTC (12 years, 9 months ago) by gross

some missing files

---

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (12 years, 9 months ago) by gross

A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.

---

Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (12 years, 9 months ago) by robwdcock

+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3

---

Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (12 years, 10 months ago) by elspeth

More copyright info added.

---

Revision 628 - Directory Listing
Modified Thu Mar 23 02:27:57 2006 UTC (12 years, 10 months ago) by elspeth

Copyright information added.

---

Revision 490 - Directory Listing
Modified Thu Feb 2 07:07:21 2006 UTC (12 years, 11 months ago) by gross

tolerance in face detection added

---

Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (13 years ago) by jgs

fix installation to directories specified by pyinstall and libinstall

---

Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (13 years ago) by jgs

minor comment and formatting changes

---

Revision 450 - Directory Listing
Modified Mon Jan 23 05:04:45 2006 UTC (13 years ago) by jgs

remove old make based build system

---

Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (13 years ago) by gross

The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings. 

---

Revision 424 - Directory Listing
Modified Tue Jan 10 04:06:58 2006 UTC (13 years ago) by gross

some minor changes

---

Revision 423 - Directory Listing
Modified Fri Jan 6 08:09:43 2006 UTC (13 years ago) by gross

some modifications in visualization to get equidistant output

---

Revision 408 - Directory Listing
Modified Fri Dec 23 00:56:56 2005 UTC (13 years, 1 month ago) by cochrane

Added a check to make sure the vtk file exists.

---

Revision 407 - Directory Listing
Modified Fri Dec 23 00:45:08 2005 UTC (13 years, 1 month ago) by gross

bug fixed

---

Revision 406 - Directory Listing
Modified Fri Dec 23 00:39:59 2005 UTC (13 years, 1 month ago) by gross

bug fixed

---

Revision 401 - Directory Listing
Modified Thu Dec 22 06:39:36 2005 UTC (13 years, 1 month ago) by gross

some new models added

---

Revision 398 - Directory Listing
Modified Wed Dec 21 07:52:54 2005 UTC (13 years, 1 month ago) by gross

file reader added

---

Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (13 years, 1 month ago) by jgs

turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!

---

Revision 340 - Directory Listing
Modified Mon Dec 12 05:10:45 2005 UTC (13 years, 1 month ago) by jgs

pass in pyinstall value from top-level scons script and add
correct suffix in module level scons scipr

---

Revision 326 - Directory Listing
Modified Wed Dec 7 03:55:19 2005 UTC (13 years, 1 month ago) by cochrane

Fixed bug with not getting the movie parameter correctly.  Also no longer
cleaning up the movie files if the movie generation failed.

---

Revision 325 - Directory Listing
Modified Wed Dec 7 02:08:17 2005 UTC (13 years, 1 month ago) by jgs

now determine hostname via socket.gethostname() as HOSTNAME
environment variable is apparently not set on all platforms

---

Revision 323 - Directory Listing
Modified Tue Dec 6 06:18:00 2005 UTC (13 years, 1 month ago) by gross

whereZero methods changed to functions

---

Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (13 years, 1 month ago) by jgs

now load default options - by default!

---

Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (13 years, 1 month ago) by jgs

now automatically build unit tests as required based on dependencies
between unit tests and libraries

---

Revision 281 - Directory Listing
Modified Wed Nov 30 09:10:59 2005 UTC (13 years, 1 month ago) by elspeth

Fixed import problem

---

Revision 280 - Directory Listing
Modified Wed Nov 30 06:23:59 2005 UTC (13 years, 1 month ago) by cochrane

Using the tsunami initial amplitude to determine the wave height mapper
scalar range.

---

Revision 276 - Directory Listing
Modified Wed Nov 30 04:31:40 2005 UTC (13 years, 1 month ago) by cochrane

Replaced wave grid creation code to load wave grid from file.

---

Revision 270 - Directory Listing
Modified Wed Nov 30 02:00:26 2005 UTC (13 years, 1 month ago) by elspeth

Fixed imports

---

Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (13 years, 1 month ago) by jgs

setup scons configuration to make and install python code

---

Revision 264 - Directory Listing
Modified Tue Nov 29 10:06:39 2005 UTC (13 years, 1 month ago) by cochrane

Removing image files after generation of movie.

---

Revision 263 - Directory Listing
Modified Tue Nov 29 09:55:16 2005 UTC (13 years, 1 month ago) by cochrane

Added visualisation of bathymmetry data, the coastline and the wave height
data as per earlier tsunami movies.  Also autogenerates the .params file for
ppmtompeg and generates the movie automatically.

---

Revision 262 - Directory Listing
Modified Tue Nov 29 07:35:12 2005 UTC (13 years, 1 month ago) by gross

tsunami added

---

Revision 259 - Directory Listing
Modified Tue Nov 29 07:14:41 2005 UTC (13 years, 1 month ago) by gross

some minor fixes

---

Revision 251 - Directory Listing
Modified Tue Nov 29 05:54:06 2005 UTC (13 years, 1 month ago) by gross

problems with coordinate axis fixed

---

Revision 247 - Directory Listing
Modified Tue Nov 29 04:57:38 2005 UTC (13 years, 1 month ago) by gross

initial checkin 

---

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (13 years, 2 months ago) by jgs
Copied from: trunk/esys2/modellib revision 154

move all directories from trunk/esys2 into trunk and remove esys2

---

Revision 151 - Directory Listing
Modified Thu Sep 22 01:55:00 2005 UTC (13 years, 4 months ago) by jgs
Original Path: trunk/esys2/modellib

Merge of development branch dev-02 back to main trunk on 2005-09-22

---

Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (13 years, 4 months ago) by jgs
Original Path: trunk/esys2/modellib

Merge of development branch dev-02 back to main trunk on 2005-09-15

---

Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (13 years, 4 months ago) by jgs
Original Path: trunk/esys2/modellib

Merge of development branch dev-02 back to main trunk on 2005-09-01

---

Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (13 years, 5 months ago) by jgs
Original Path: trunk/esys2/modellib

Merge of development branch dev-02 back to main trunk on 2005-08-23

---

Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (13 years, 5 months ago) by jgs
Original Path: trunk/esys2/modellib

erge of development branch dev-02 back to main trunk on 2005-08-12

---

Revision 146 - Directory Listing
Modified Fri Jul 29 01:44:29 2005 UTC (13 years, 5 months ago) by jgs
Original Path: trunk/esys2/modellib

First merge of development branch dev-02 back to main trunk on 2005-07-29

---

Revision 144 - Directory Listing
Modified Mon Jul 25 05:42:21 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/modellib

moved form old modellib directory

---

Revision 141 - Directory Listing
Modified Mon Jul 25 05:15:41 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/modellib

fixed to work with new python source/install directory structure

---

Revision 135 - Directory Listing
Modified Fri Jul 22 07:04:52 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/modellib

makefile for modellib module

---

Revision 134 - Directory Listing
Modified Fri Jul 22 06:28:49 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/modellib

added modellib/lib/py_src

---

Revision 132 - Directory Listing
Modified Fri Jul 22 06:23:18 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/modellib

.keep file for modellib/lib

---

Revision 127 - Directory Listing
Added Fri Jul 22 05:11:29 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/modellib

moved modellib code to esys2/modellib/py_src