Log of /trunk/scons

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Revision 1810 - Directory Listing
Modified Thu Sep 25 06:53:26 2008 UTC (12 years, 5 months ago) by ksteube

Updated copyright for a few remaining python files

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Revision 1804 - Directory Listing
Modified Wed Sep 24 07:52:19 2008 UTC (12 years, 5 months ago) by gross

a robister version of the upwinding scheme

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Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (12 years, 5 months ago) by jfenwick

Merged noarrayview branch onto trunk.

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Revision 1785 - Directory Listing
Modified Thu Sep 11 23:35:42 2008 UTC (12 years, 5 months ago) by ksteube

Config variables such as boost_lib_path and netcdf_lib_path are stored in
the wrapper script bin/finleypython so the user gets the proper environment
automatically

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Revision 1771 - Directory Listing
Modified Mon Sep 8 22:47:55 2008 UTC (12 years, 5 months ago) by ksteube

Removed failing test until we fix a bug.
Fixed several compiler warnings.

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Revision 1769 - Directory Listing
Modified Mon Sep 8 04:34:33 2008 UTC (12 years, 5 months ago) by ksteube

test commit

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Revision 1767 - Directory Listing
Modified Mon Sep 8 02:53:50 2008 UTC (12 years, 5 months ago) by gross

print statements removed

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Revision 1753 - Directory Listing
Modified Sun Sep 7 22:01:23 2008 UTC (12 years, 5 months ago) by ksteube

Test suite fails due to missing arg in call to Finley_Mesh_createMappings.
Added NULL arg, but still need to find proper fix as loadMesh does not work.

Adjusted SConstruct to delete pythonMPI if not compiled for MPI.

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Revision 1749 - Directory Listing
Modified Wed Sep 3 07:25:01 2008 UTC (12 years, 6 months ago) by gross

fixes a problem with the saveVTK writing under mpi

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Revision 1744 - Directory Listing
Modified Tue Sep 2 07:39:18 2008 UTC (12 years, 6 months ago) by ksteube

Can now read and MPI distribute a finley mesh including the tags.

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Revision 1741 - Directory Listing
Modified Mon Sep 1 04:06:41 2008 UTC (12 years, 6 months ago) by gross

VTK writer supports HEX27 and REC9 now.

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Revision 1731 - Directory Listing
Modified Wed Aug 27 03:11:24 2008 UTC (12 years, 6 months ago) by ksteube

Updated "assumed modules" in scons/cognac_options.py

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Revision 1728 - Directory Listing
Modified Tue Aug 26 05:15:32 2008 UTC (12 years, 6 months ago) by ksteube

Minor update to configuration for cognac

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Revision 1722 - Directory Listing
Modified Fri Aug 22 04:20:30 2008 UTC (12 years, 6 months ago) by gross

The CSR matrix patters handed ober to ParMetis may not containn the main diagonal entry. 
This revisison is fixing the problem.

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Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (12 years, 6 months ago) by ksteube

Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.

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Revision 1692 - Directory Listing
Modified Thu Aug 7 23:05:37 2008 UTC (12 years, 6 months ago) by artak

working configuration

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Revision 1690 - Directory Listing
Modified Thu Aug 7 01:12:38 2008 UTC (12 years, 6 months ago) by jfenwick

Added Configuration for shake63 (Joel-Box)

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Revision 1662 - Directory Listing
Modified Tue Jul 22 01:49:21 2008 UTC (12 years, 7 months ago) by ksteube

Ran a simple Escript program on Mac OS Darwin. Still much to do.

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Revision 1648 - Directory Listing
Modified Tue Jul 15 08:01:03 2008 UTC (12 years, 7 months ago) by phornby

Remove -c99 option on compiler, no longer needed.

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Revision 1634 - Directory Listing
Modified Sat Jul 12 09:08:33 2008 UTC (12 years, 7 months ago) by phornby

linux_gcc_eg_options.py:
remove the std99 option, it is no longer needed as the code compiles without
C 1999 extension (need for these extensions elinminated in windows port).
Turn on all warnings except unknown pragmas. Should catch a lot of stuff.

SConstruct:
Impassioned plea

system_dep.h:
Add the standard incantation for dealing with const declarations
in C code called from C and C++

blocktimer:
Get the calling interface right for C code called from C and C++
and use __const as defined in system_dep.h
(Should be re-factored into compiler_dep.h file).

MeshAdapterFactory.cpp:
Since we have (effectively) no control over netCDF policy,
cast const char *'s to char *'s

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Revision 1633 - Directory Listing
Modified Sat Jul 12 07:45:17 2008 UTC (12 years, 7 months ago) by trankine

Turn on netcdf in windows build. No new errors generated.... remarkable.

The correctly configured netCDF source and windows build config.
that matches enthought python25/vtk/PmdPyRT for windows, can be
obtained from

https://cgsrv1.arrc.csiro.au/subversion/swframeutils/thirdParty/netcdf/trunk

username & password needed. If you have access to our twiki, no new username is required,
but authorisation to read the repository will be required.

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Revision 1628 - Directory Listing
Modified Fri Jul 11 13:12:46 2008 UTC (12 years, 7 months ago) by phornby

Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.

You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.

Here is a list of the conflicts and their resolution at this
point in time.


=================================================================================
(LLWS == looks like white space).

finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================

This currently passes tests on linux (debian), but is not checked on windows or Altix yet.

This checkin is to make a trunk I can check out for windows to do tests on it.

Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.

May the God of doughnuts have mercy on my soul.

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Revision 1620 - Directory Listing
Modified Fri Jun 27 02:30:18 2008 UTC (12 years, 8 months ago) by ksteube

Included more MPI configuration options on Savanna

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Revision 1618 - Directory Listing
Modified Tue Jun 24 01:16:40 2008 UTC (12 years, 8 months ago) by ksteube

Trying to get documentation builds going again after reinstalling my desktop OS

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Revision 1579 - Directory Listing
Modified Mon Jun 2 08:48:36 2008 UTC (12 years, 9 months ago) by ksteube

Fix typo in PCG.c
Improvement of build options for Savanna, ac.apac.edu, shake71

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Revision 1569 - Directory Listing
Modified Sat May 24 04:51:38 2008 UTC (12 years, 9 months ago) by ksteube

Config for new installation at APAC with offscreen rendering

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Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (12 years, 9 months ago) by ksteube

Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering

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Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (12 years, 9 months ago) by ksteube

scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.

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Revision 1561 - Directory Listing
Modified Wed May 21 06:58:52 2008 UTC (12 years, 9 months ago) by ksteube

Added python method printParallelThreadCounts() to tell how many MPI CPUs and OpenMP threads we are using (for testing hybrid runs)

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Revision 1560 - Directory Listing
Modified Wed May 21 05:55:30 2008 UTC (12 years, 9 months ago) by ksteube

Improvements to Savanna configuration

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Revision 1559 - Directory Listing
Modified Wed May 21 04:27:15 2008 UTC (12 years, 9 months ago) by ksteube

Compiles and runs on Savanna (hostname service0)

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Revision 1459 - Directory Listing
Modified Thu Mar 27 01:49:10 2008 UTC (12 years, 11 months ago) by ksteube

Implemented ParMETIS for mesh partition optimization under MPI.
Documented optimize=True in User Guide for Brick() and Rectangle().

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Revision 1458 - Directory Listing
Modified Mon Mar 3 23:42:06 2008 UTC (13 years ago) by ksteube

Added config file for virtual machine with hostname 'vm_system'

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Revision 1427 - Directory Listing
Modified Wed Feb 27 07:54:48 2008 UTC (13 years ago) by trankine

brought from the windows port branch. Should make no difference to *nix's

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Revision 1412 - Directory Listing
Modified Fri Feb 8 04:46:10 2008 UTC (13 years ago) by ksteube

Updated configuration for ac.apac.edu.au

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Revision 1403 - Directory Listing
Modified Thu Jan 31 04:17:38 2008 UTC (13 years, 1 month ago) by ksteube

Added configuration options for VM to give it access to NetCDF

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Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (13 years, 1 month ago) by trankine

And get the *(&(*&(* name right

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Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (13 years, 1 month ago) by trankine
Original Path: temp/scons

Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

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Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (13 years, 1 month ago) by phornby
Original Path: temp_trunk_copy/scons

Make a temp copy of the trunk before checking in the windows changes

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Revision 1383 - Directory Listing
Modified Thu Jan 10 06:48:28 2008 UTC (13 years, 1 month ago) by phornby

Link to the latest boost.

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Revision 1380 - Directory Listing
Modified Wed Jan 9 04:26:03 2008 UTC (13 years, 1 month ago) by gross

some info about the modules to be used

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Revision 1374 - Directory Listing
Modified Tue Jan 8 09:37:55 2008 UTC (13 years, 1 month ago) by gross

some changes to get things going on the cognac.ivec.org.

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Revision 1373 - Directory Listing
Modified Mon Jan 7 05:32:25 2008 UTC (13 years, 1 month ago) by gross

on ess: link against python 2.4.3 now.

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Revision 1356 - Directory Listing
Modified Thu Nov 29 05:48:33 2007 UTC (13 years, 3 months ago) by poulet

* moved to python 2.4 to python 2.5

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Revision 1336 - Directory Listing
Modified Fri Nov 2 06:48:47 2007 UTC (13 years, 4 months ago) by poulet

Chris Hines successfully modified this file to build escript on Cognac using:
* python/2.4.2
* intel-cc/10.0.023
* boost/1.33.1/python2.4.2/icc10.0.023
* netcdf/3.6.2
* intel-mkl
* scsl
* numarray/1.5.2

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Revision 1333 - Directory Listing
Modified Tue Oct 23 03:30:15 2007 UTC (13 years, 4 months ago) by matt

scons configuration file for shake45.

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Revision 1331 - Directory Listing
Modified Tue Oct 23 00:42:15 2007 UTC (13 years, 4 months ago) by gross

ArithmeticTuple added. It is useful for certain applications of PCG

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Revision 1329 - Directory Listing
Modified Thu Oct 18 05:39:25 2007 UTC (13 years, 4 months ago) by ksteube

Can now compile with openmp on cyclone. Had to fix a bug in scons in intelc.py
to allow use of Intel compilers.

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Revision 1322 - Directory Listing
Modified Thu Sep 27 04:40:43 2007 UTC (13 years, 5 months ago) by ksteube

Code now compiles and runs on cyclone.hpcu.uq.edu.au.
Had to remove intelc from the SConstruct, but didn't commit that change.
Changed a couple C++ comments to C comments.

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Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (13 years, 5 months ago) by ksteube

The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.

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Revision 1310 - Directory Listing
Modified Mon Sep 24 04:00:47 2007 UTC (13 years, 5 months ago) by ksteube

A few additions to make trunk match trunk-mpi-branch

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Revision 1250 - Directory Listing
Modified Thu Aug 16 02:54:42 2007 UTC (13 years, 6 months ago) by ksteube

Minor repairs to scons files

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Revision 1245 - Directory Listing
Modified Mon Aug 13 14:27:20 2007 UTC (13 years, 6 months ago) by phornby

Add in the netcdf libraries.

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Revision 1242 - Directory Listing
Modified Mon Aug 13 06:45:41 2007 UTC (13 years, 6 months ago) by phornby

Update for the new SConstruct

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Revision 1241 - Directory Listing
Modified Mon Aug 13 06:41:05 2007 UTC (13 years, 6 months ago) by phornby

New options for the default windows + MSC combination.

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Revision 1240 - Directory Listing
Modified Mon Aug 13 06:39:29 2007 UTC (13 years, 6 months ago) by phornby

query python_cmd in env to get the python command.

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Revision 1234 - Directory Listing
Modified Mon Aug 13 00:22:25 2007 UTC (13 years, 6 months ago) by phornby

Based on http://www.scons.org/wiki/DoxygenBuilder, this is a useful tool for managing doxygen builds.

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Revision 1233 - Directory Listing
Modified Mon Aug 13 00:20:22 2007 UTC (13 years, 6 months ago) by phornby

Much more extensive extensions that can make SConscripts much shorter.

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Revision 1232 - Directory Listing
Modified Fri Aug 10 06:44:04 2007 UTC (13 years, 6 months ago) by phornby

Reduce the number of IS_WINDOWS_PLATFORM references in SConstruct.
Change path to boost etc in windows_mscv71_options.py 
Some of these changes are present in windows_mscv71_options.py, more changes needed once I get the mscv71 build going properly.

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Revision 1215 - Directory Listing
Modified Thu Jul 12 01:14:55 2007 UTC (13 years, 7 months ago) by ksteube

Repaired all targets for: scons docs
It runs all these targets: release_examples guide_pdf api_epydoc api_doxygen

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Revision 1186 - Directory Listing
Modified Fri Jun 1 03:26:23 2007 UTC (13 years, 9 months ago) by ksteube

More mods to compile options for ac.apac.edu.au

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Revision 1184 - Directory Listing
Modified Thu May 31 04:28:37 2007 UTC (13 years, 9 months ago) by matt

Fixed netCDF compile option.

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Revision 1175 - Directory Listing
Modified Wed May 30 03:51:11 2007 UTC (13 years, 9 months ago) by ksteube

Adjustments for ac.apac.edu.au paths

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Revision 1160 - Directory Listing
Modified Wed May 23 00:44:01 2007 UTC (13 years, 9 months ago) by gross

The OMP_NUM_THREADS environment variable is now imported into the scons evironment.

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Revision 1139 - Directory Listing
Modified Mon May 14 05:12:53 2007 UTC (13 years, 9 months ago) by ksteube

Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.

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Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (13 years, 10 months ago) by gross

Changes needed for windows. This still does not work on and has not run on linux and the altix. 
 
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf. 

 

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Revision 1132 - Directory Listing
Modified Tue May 8 05:58:46 2007 UTC (13 years, 10 months ago) by phornby

c flags to suppress pragma warnings

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Revision 1041 - Directory Listing
Modified Fri Mar 16 09:11:10 2007 UTC (13 years, 11 months ago) by phornby

Change the netcdf path options to reflect the svn controlled netcdf path.

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Revision 1040 - Directory Listing
Modified Fri Mar 16 08:43:08 2007 UTC (13 years, 11 months ago) by phornby

Now links against netcdf and netcdf_cpp on windows.

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Revision 1036 - Directory Listing
Modified Fri Mar 16 04:55:44 2007 UTC (13 years, 11 months ago) by phornby

msvc7.1 options file for windows.

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Revision 1033 - Directory Listing
Modified Wed Mar 14 08:38:00 2007 UTC (13 years, 11 months ago) by phornby

Options for the IVEC SGI altix.

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Revision 1025 - Directory Listing
Modified Tue Mar 13 08:02:12 2007 UTC (13 years, 11 months ago) by phornby

More windows options.

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Revision 1019 - Directory Listing
Modified Mon Mar 12 10:04:54 2007 UTC (13 years, 11 months ago) by phornby

More windows options changes.

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Revision 1018 - Directory Listing
Modified Mon Mar 12 07:36:36 2007 UTC (13 years, 11 months ago) by phornby

Make Name consistent.

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Revision 1017 - Directory Listing
Modified Mon Mar 12 07:35:46 2007 UTC (13 years, 11 months ago) by phornby

Windows options files.

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Revision 991 - Directory Listing
Modified Wed Feb 21 07:27:15 2007 UTC (14 years ago) by matt

Changes to link against NetCDF/3.6.1 module installation with linkage and
compilation consistent with other libraries currently dynamically
linked. Unaligned access error appears linked to escript implementation and
NetCDF/3.6.1 module tests for 64bit file access pass. This module differs from
the previous module as assertions are disabled and compiler optimisation is
invoked _without_ symbol table/lookup.

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Revision 990 - Directory Listing
Modified Wed Feb 21 04:27:52 2007 UTC (14 years ago) by ksteube

Cleaned up the python in-line doc to make epydoc work better

Configured for shake71 to find NetCDF libraries

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Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (14 years ago) by ksteube

Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.

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Revision 970 - Directory Listing
Modified Wed Feb 14 03:46:01 2007 UTC (14 years ago) by jongui

modified some files.

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Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (14 years ago) by ksteube

Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.

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Revision 951 - Directory Listing
Modified Wed Feb 7 05:26:13 2007 UTC (14 years ago) by gross

fixes to get netcdf going on the altix

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Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (14 years ago) by gross

escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed. 

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Revision 929 - Directory Listing
Modified Wed Jan 17 07:41:13 2007 UTC (14 years, 1 month ago) by gross

reverse orientation added but does not work for 2D yet.

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Revision 913 - Directory Listing
Modified Tue Dec 12 01:21:00 2006 UTC (14 years, 2 months ago) by matt

The serial version still requires linking to OpenMP .so's. The cause is
likely an explicit use of the OpenMP api which is unguarded in escript/finley
or in a third-party library.

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Revision 876 - Directory Listing
Modified Thu Oct 19 03:50:23 2006 UTC (14 years, 4 months ago) by ksteube

Added erf (error function) implementation

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Revision 869 - Directory Listing
Modified Fri Oct 13 03:48:29 2006 UTC (14 years, 4 months ago) by phornby

Add some example options files people can copy and modify for their node.

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Revision 864 - Directory Listing
Modified Wed Oct 4 01:26:18 2006 UTC (14 years, 5 months ago) by matt

I have further refined the choice of libraries for the serial build. The
correct serial MKL libraries are still unknown.

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Revision 863 - Directory Listing
Modified Wed Oct 4 01:01:15 2006 UTC (14 years, 5 months ago) by matt

Added serial execution build options for running on the altix. In doing so, a
minor bug in SConstruct was found and fixed. The correct libraries still need
to be sorted after consulting Lutz and/or Ken.

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Revision 853 - Directory Listing
Modified Wed Sep 20 05:56:36 2006 UTC (14 years, 5 months ago) by gross

some performance problems wit openmp fixed.

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Revision 817 - Directory Listing
Modified Sat Aug 26 03:08:52 2006 UTC (14 years, 6 months ago) by ksteube

Can now compile and run with MPI on shake71

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Revision 808 - Directory Listing
Modified Fri Aug 11 01:25:16 2006 UTC (14 years, 6 months ago) by ksteube

Can now build escript and use doxygen on shake71

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Revision 805 - Directory Listing
Modified Thu Aug 10 06:09:02 2006 UTC (14 years, 6 months ago) by gross

first steps toward UMFPACK

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Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (14 years, 7 months ago) by bcumming

changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.  

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Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (14 years, 7 months ago) by bcumming

Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.  

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Revision 780 - Directory Listing
Modified Fri Jul 14 07:46:07 2006 UTC (14 years, 7 months ago) by woo409

+ Removed nelix_kb_options.py since I no longer have that notebook and as a result it isn't a maintained example of a win32 configuration. coleto_kb_options.py is my new notebooks configuration. Note that this particular set of compilation options target the Core Duo processor (and family relations) and as such won't work on other x86 platforms that don't have the same feature set. See the Intel compiler guide for details on how to target other processors.

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Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (14 years, 7 months ago) by woo409

+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows

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Revision 776 - Directory Listing
Modified Wed Jul 12 00:07:31 2006 UTC (14 years, 7 months ago) by gross

basic code for persistence of jacobeans added. routines are not called yet

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Revision 774 - Directory Listing
Modified Mon Jul 10 02:00:55 2006 UTC (14 years, 7 months ago) by ksteube

Modified nightly testing:
	Tests run as batch job via cron
	You can choose to run run_tests or all_tests via command-line argument
	They use 2 CPUs for run_tests and 4 CPUs for all_tests
	Log files from tests are saved in /raid3/ksteube/AutoTests/Logs

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Revision 763 - Directory Listing
Modified Fri Jun 30 05:52:31 2006 UTC (14 years, 8 months ago) by gross

some modification in the element reordering which should solve some problems 
caused by the fact that qsort may handels == items differently on different platform.

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Revision 761 - Directory Listing
Modified Fri Jun 30 00:07:21 2006 UTC (14 years, 8 months ago) by bcumming

- removed the need to uncomment #define PASO_MPI when building MPI
  version, now passed as an argument to the compiler.

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Revision 760 - Directory Listing
Modified Thu Jun 29 05:36:08 2006 UTC (14 years, 8 months ago) by ksteube

Added a timer so we can see how long each test takes to run.

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Revision 759 - Directory Listing
Modified Thu Jun 29 01:53:23 2006 UTC (14 years, 8 months ago) by bcumming

- added directory pythonMPI to the source tree. this directory contains
  the c++ wrapper that is used to run python scripts in parallel for the
  MPI version of escript/finley
- updated the SConstruct and ./scons/ess_options.py for conditional MPI
  compilation. To compile the MPI version on ESS uncomment the #define
  PASO_MPI in ./paso/src/Paso.h and add the command line option
  useMPI=yes when running scons.
- fixed a compile time error in the MPI build in  
  finley/src/CPPAdapter/MeshAdapterFactory.cpp 
     

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Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (14 years, 8 months ago) by woo409

+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)

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Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (14 years, 8 months ago) by bcumming

Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.

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Revision 741 - Directory Listing
Modified Thu Jun 22 03:36:04 2006 UTC (14 years, 8 months ago) by woo409

+ Added {inc,py,lib}install paths so that when escript builds on ac it installs the build into /home/escript/escript-<put a revision number here>. That way you can just copy this directory into /opt of wherever for someone to install into ac.

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Revision 740 - Directory Listing
Modified Thu Jun 22 03:23:05 2006 UTC (14 years, 8 months ago) by woo409

+ Options to build on APAC NF ac machine modified to use /home/escript build area. escript builds using its own version of boost and python2.4.3 (and scons for that matter) in this directory rather than using the APAC NF installations. This eases APAC's module management where different groups want slightly different configurations for various modules.

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Revision 738 - Directory Listing
Modified Sat Jun 17 06:00:19 2006 UTC (14 years, 8 months ago) by matt

ess_options.py is updated and synchronised with the esys/env module. In turn, this module is used to build and setup the user environments of esys/current and esys/current-debug.

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Revision 735 - Directory Listing
Modified Wed Jun 14 02:09:21 2006 UTC (14 years, 8 months ago) by ksteube

Removed -ansi_alias compiler option to icpc. It was causing the compiler
to optimize away the default constructor DataAbstract::DataAbstract and
breaking the tests.

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Revision 732 - Directory Listing
Modified Fri Jun 9 05:26:48 2006 UTC (14 years, 8 months ago) by woo409

+ First cut at build environment for Finley on the APAC National Facility (AC) machine

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Revision 722 - Directory Listing
Modified Mon May 1 11:49:18 2006 UTC (14 years, 10 months ago) by gross

abstract added in users guide added

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Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (14 years, 10 months ago) by gross

latex build documentation is working now

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Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (14 years, 11 months ago) by gross

A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.

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Revision 694 - Directory Listing
Modified Thu Mar 30 11:35:55 2006 UTC (14 years, 11 months ago) by gross

pyvisi builds now. tests still to be fixed.

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Revision 691 - Directory Listing
Modified Wed Mar 29 03:43:36 2006 UTC (14 years, 11 months ago) by robwdcock

+ Fixed incorrect target path in SConstruct file
+ cognac now links with g++ compiled boost rather than intelc compiled boost due to compilation errors with intel c. (Finley will still compile and work with intel c though) - this is the same configuration as the access altix

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Revision 689 - Directory Listing
Modified Tue Mar 28 07:16:54 2006 UTC (14 years, 11 months ago) by robwdcock

+ cognac now uses installed boost libraries rather than the ones in woo409's home directory

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Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (14 years, 11 months ago) by robwdcock

+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3

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Revision 645 - Directory Listing
Modified Fri Mar 24 01:10:42 2006 UTC (14 years, 11 months ago) by elspeth

More copyright.

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Revision 619 - Directory Listing
Modified Wed Mar 22 04:49:24 2006 UTC (14 years, 11 months ago) by gross

non letter and non digital in hostname ar ereplaced by _ now

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Revision 591 - Directory Listing
Modified Mon Mar 13 02:05:54 2006 UTC (14 years, 11 months ago) by gross

papi switched off on altix

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Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (14 years, 11 months ago) by gross

eigenvalues: compiles and passes tests on altix now

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Revision 551 - Directory Listing
Modified Wed Feb 22 02:59:25 2006 UTC (15 years ago) by robwdcock

Scons build options for cognac.ivec.org using intel v9.0.026 compilers
Note: Boost is currently not available as a module on cognac. As a result the boost directories used in this build point to my specific boost installation which should be visible to all ivec users. This will get fixed eventually. 

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Revision 550 - Directory Listing
Modified Wed Feb 22 02:14:38 2006 UTC (15 years ago) by gross

more tests on slicing

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Revision 487 - Directory Listing
Modified Thu Feb 2 06:16:30 2006 UTC (15 years, 1 month ago) by jgs

define epydoc PYTHONPATH setting

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Revision 486 - Directory Listing
Modified Thu Feb 2 05:23:44 2006 UTC (15 years, 1 month ago) by jgs

define locations of doxygen/epydoc executables

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Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (15 years, 1 month ago) by jgs

add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)

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Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (15 years, 1 month ago) by jgs

fix installation to directories specified by pyinstall and libinstall

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Revision 456 - Directory Listing
Modified Tue Jan 24 04:38:50 2006 UTC (15 years, 1 month ago) by jgs

minor formatting changes

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Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (15 years, 1 month ago) by jgs

minor comment and formatting changes

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Revision 427 - Directory Listing
Modified Tue Jan 10 04:24:07 2006 UTC (15 years, 1 month ago) by gross

typo fixed

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Revision 426 - Directory Listing
Modified Tue Jan 10 04:17:43 2006 UTC (15 years, 1 month ago) by gross

some commends added

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Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (15 years, 1 month ago) by gross

The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings. 

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Revision 370 - Directory Listing
Modified Fri Dec 16 00:52:34 2005 UTC (15 years, 2 months ago) by cochrane

Updated to allow for building of API documentation.

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Revision 368 - Directory Listing
Modified Thu Dec 15 23:23:12 2005 UTC (15 years, 2 months ago) by gross

and a bit more on version detection

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Revision 367 - Directory Listing
Modified Thu Dec 15 22:55:46 2005 UTC (15 years, 2 months ago) by gross

include file for python is now detected

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Revision 360 - Directory Listing
Modified Thu Dec 15 01:52:16 2005 UTC (15 years, 2 months ago) by jgs

add target to run all unit tests, the build will fail
for this target if any unit test fails

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Revision 359 - Directory Listing
Modified Thu Dec 15 01:08:03 2005 UTC (15 years, 2 months ago) by jgs

runUnitTest now returns an error code if the test fails

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Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (15 years, 3 months ago) by jgs

now load default options - by default!

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Revision 297 - Directory Listing
Modified Fri Dec 2 04:57:48 2005 UTC (15 years, 3 months ago) by jgs

bruce tests cases are now automatically run whenever they are rebuilt

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Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (15 years, 3 months ago) by jgs

setup scons configuration to make and install python code

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Revision 267 - Directory Listing
Modified Wed Nov 30 01:13:10 2005 UTC (15 years, 3 months ago) by jgs

fixed typo in options string

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Revision 258 - Directory Listing
Modified Tue Nov 29 06:43:14 2005 UTC (15 years, 3 months ago) by jgs

add options file for the prism (not tested yet)

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Revision 257 - Directory Listing
Modified Tue Nov 29 06:23:50 2005 UTC (15 years, 3 months ago) by jgs

fixed specification of solver libs

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Revision 256 - Directory Listing
Modified Tue Nov 29 06:22:53 2005 UTC (15 years, 3 months ago) by jgs

fixed specification of solver libs

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Revision 255 - Directory Listing
Modified Tue Nov 29 06:13:22 2005 UTC (15 years, 3 months ago) by jgs

pass in solver libraries to link with via options files now

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Revision 254 - Directory Listing
Modified Tue Nov 29 06:12:55 2005 UTC (15 years, 3 months ago) by jgs

another alternative options file

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Revision 252 - Directory Listing
Modified Tue Nov 29 05:58:03 2005 UTC (15 years, 3 months ago) by jgs

pass in platform specific libraries via options files now

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Revision 249 - Directory Listing
Modified Tue Nov 29 05:29:09 2005 UTC (15 years, 3 months ago) by jgs

fix compiler options to enable compilation on gcc platforms

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Revision 245 - Directory Listing
Modified Tue Nov 29 02:11:05 2005 UTC (15 years, 3 months ago) by jgs

added some comments and reasonable default values

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Revision 243 - Directory Listing
Modified Mon Nov 28 06:36:40 2005 UTC (15 years, 3 months ago) by jgs

add a default options file - basis for other custom options files

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Revision 238 - Directory Listing
Modified Mon Nov 28 05:33:38 2005 UTC (15 years, 3 months ago) by jgs

fix quoting of library names

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Revision 237 - Directory Listing
Modified Mon Nov 28 05:26:43 2005 UTC (15 years, 3 months ago) by jgs

first draft of options file for gcc platforms

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Revision 236 - Directory Listing
Modified Mon Nov 28 05:25:35 2005 UTC (15 years, 3 months ago) by jgs

add names of python and boost libraries to config file

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Revision 226 - Directory Listing
Modified Fri Nov 25 01:40:04 2005 UTC (15 years, 3 months ago) by jgs

import compile options into bruce unit test builds from options file now

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Revision 225 - Directory Listing
Modified Fri Nov 25 01:22:34 2005 UTC (15 years, 3 months ago) by jgs

pass in correct options to archiver for static libraries

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Revision 224 - Directory Listing
Modified Fri Nov 25 00:33:27 2005 UTC (15 years, 3 months ago) by jgs

implement switching of debug compiler options based on command line flag 'debug'

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Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (15 years, 3 months ago) by jgs

pass in cc/cxx settings from config file

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Revision 216 - Directory Listing
Modified Thu Nov 24 06:35:14 2005 UTC (15 years, 3 months ago) by jgs

first pass at importing compile options from an external file'

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Revision 215 - Directory Listing
Added Thu Nov 24 06:25:15 2005 UTC (15 years, 3 months ago) by jgs

added directory and first draft file to hold options settings
for different configurations (debug/nodebug, host, etc)