Log of /trunk/weipa

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Revision 6208 - Directory Listing
Modified Mon May 16 02:17:37 2016 UTC (2 years, 4 months ago) by caltinay

rebaseline test meshes.

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Revision 6207 - Directory Listing
Modified Mon May 16 00:49:48 2016 UTC (2 years, 4 months ago) by caltinay

merged finley Mesh and MeshAdapter into FinleyDomain.

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Revision 6203 - Directory Listing
Modified Wed May 11 06:13:51 2016 UTC (2 years, 4 months ago) by caltinay

dudley: merged Mesh and MeshAdapter into DudleyDomain to finally remove the
now unnecessary indirection. If all builders are happy we can do the same
for finley.

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Revision 6197 - Directory Listing
Modified Fri Apr 29 14:02:32 2016 UTC (2 years, 4 months ago) by caltinay

moved Distribution struct to escript and updated domains accordingly.
We can now build the full escript suite without paso (-:

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Revision 6184 - Directory Listing
Modified Wed Apr 27 01:30:57 2016 UTC (2 years, 4 months ago) by caltinay

more fixes to weipa readerlib build

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Revision 6183 - Directory Listing
Modified Wed Apr 27 00:09:32 2016 UTC (2 years, 4 months ago) by caltinay

fix weipa readerlib build.

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Revision 6180 - Directory Listing
Modified Sat Apr 16 04:53:19 2016 UTC (2 years, 5 months ago) by caltinay

fix escriptreader dependencies

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Revision 6175 - Directory Listing
Modified Fri Apr 15 06:59:14 2016 UTC (2 years, 5 months ago) by caltinay

make sure to copy python lists rather than adding on or PrependUnique is
useless.

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Revision 6174 - Directory Listing
Modified Fri Apr 15 03:41:03 2016 UTC (2 years, 5 months ago) by caltinay

Some reorganisation of EscriptParams and related changes.
We now distinguish between modifiable parameters and build features.
To interrogate the latter use:
escript::hasFeature()  [ python: escript.hasFeature() ]
and
escript::listFeatures() [ python: escript.listFeatures() ]

I have decided to add specific getters for the remaining few parameters to
avoid the penalty of string comparisons and to remove the wealth of friend
declarations with Data* classes.

Also made some changes in SConstruct to make sure we set *all* preprocessor
directives *before* building anything.

Still to do is dealing with checks for direct solver and gmsh. The latter needs
to be a runtime check rather than a compile time check.

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Revision 6155 - Directory Listing
Modified Fri Apr 8 00:48:28 2016 UTC (2 years, 5 months ago) by caltinay

index type long fixes in weipa. Weipa does not support long but converts
at the moment...

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Revision 6152 - Directory Listing
Modified Thu Apr 7 00:33:51 2016 UTC (2 years, 5 months ago) by caltinay

we should now properly catch segfaults when testing.

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Revision 6148 - Directory Listing
Modified Wed Apr 6 10:28:13 2016 UTC (2 years, 5 months ago) by caltinay

fix savanna options file and make sure libraries get added once only.

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Revision 6145 - Directory Listing
Modified Wed Apr 6 06:28:57 2016 UTC (2 years, 5 months ago) by caltinay

now refraining from adding all libraries to all targets. So we don't link
unnecessary libraries, e.g. escript does not need parmetis etc...

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Revision 6144 - Directory Listing
Modified Wed Apr 6 05:25:13 2016 UTC (2 years, 5 months ago) by caltinay

last round of namespacing defines.

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Revision 6129 - Directory Listing
Modified Tue Apr 5 06:12:25 2016 UTC (2 years, 5 months ago) by caltinay

rebaseline.

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Revision 6124 - Directory Listing
Modified Tue Apr 5 03:23:12 2016 UTC (2 years, 5 months ago) by caltinay

Fixing python module build on OS X. Added PythonModule builder so we do this generically now.

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Revision 6119 - Directory Listing
Modified Sun Apr 3 23:36:59 2016 UTC (2 years, 5 months ago) by caltinay

merging trilinos branch to trunk.
We can now build with trilinos and use it instead of paso for single PDEs.
There are some more things to be done...

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Revision 6112 - Directory Listing
Modified Thu Mar 31 09:40:10 2016 UTC (2 years, 5 months ago) by jfenwick

Relicense all the things!

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Revision 6034 - Directory Listing
Modified Wed Mar 9 00:37:57 2016 UTC (2 years, 6 months ago) by caltinay

a few changes to GroupTest / utest:
GroupTest class now takes a name parameter that is used as (shell) function
name in utest for the test group.
By default all tests are run as before but one can now do:
./utest.sh build '-t2' escriptcpp
to only run the escript c++ unit tests.
Also tweaked a couple things so utest.sh does now work with dash.

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Revision 6004 - Directory Listing
Modified Tue Mar 1 23:43:55 2016 UTC (2 years, 6 months ago) by caltinay

removed build_shared from most files.
esysUtils is gone and paso now has to be a shared lib to allow python
bindings.
I haven't bumped the options file version yet as there's more to come
before the release (trilinos etc) and the plan is to overhaul the scons
stuff once again.

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Revision 6001 - Directory Listing
Modified Tue Mar 1 05:01:49 2016 UTC (2 years, 6 months ago) by caltinay

Bye bye esysUtils.
Also removed first.h as escript/DataTypes.h is now required everywhere
and fulfills that role by including a boost python header first.

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Revision 5998 - Directory Listing
Modified Mon Feb 29 08:57:28 2016 UTC (2 years, 6 months ago) by caltinay

removed some macros and moved index.h to escript.

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Revision 5997 - Directory Listing
Modified Mon Feb 29 07:24:47 2016 UTC (2 years, 6 months ago) by caltinay

moved esys MPI to escript.

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Revision 5996 - Directory Listing
Modified Mon Feb 29 05:39:02 2016 UTC (2 years, 6 months ago) by caltinay

1) finally put dudley into its own namespace
2) replaced all Esys*Error calls by exceptions in dudley and paso

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Revision 5968 - Directory Listing
Modified Tue Feb 23 06:08:37 2016 UTC (2 years, 7 months ago) by caltinay

moved file writer to escript and added explicit link to escript in paso.

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Revision 5948 - Directory Listing
Modified Fri Feb 19 05:02:39 2016 UTC (2 years, 7 months ago) by caltinay

moved index_t & dim_t into escript::DataTypes and updated files
accordingly. Dudley needs a full sweep of namespacing at some not-distant
future.

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Revision 5938 - Directory Listing
Modified Thu Feb 18 06:30:35 2016 UTC (2 years, 7 months ago) by jfenwick

Merging from 5937 on the complex branch

Some parts of complex work but all of it is
not unit tested and it is certainly not feature
complete (I haven't put any time into dealing with
subworld for complex).

The other important aspect of this merge is that
c++11 is now required to build escript.

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Revision 5863 - Directory Listing
Modified Wed Jan 13 02:25:48 2016 UTC (2 years, 8 months ago) by jfenwick

Copyright dates updated.
\version for doxygen to read

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Revision 5794 - Directory Listing
Modified Fri Sep 18 02:32:59 2015 UTC (3 years ago) by caltinay

Fix for bug #328

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Revision 5709 - Directory Listing
Modified Mon Jun 29 06:13:31 2015 UTC (3 years, 2 months ago) by caltinay

fixed an issue introduced in last commit.

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Revision 5708 - Directory Listing
Modified Mon Jun 29 05:25:51 2015 UTC (3 years, 2 months ago) by caltinay

index fixes and some code cleanup in finley.
Introduced index_size attribute to finley dump (netCDF) files.

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Revision 5706 - Directory Listing
Modified Mon Jun 29 03:41:36 2015 UTC (3 years, 2 months ago) by sshaw

all python files now force use of python3 prints and division syntax to stop sneaky errors appearing in py3 environs

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Revision 5700 - Directory Listing
Modified Fri Jun 26 05:18:37 2015 UTC (3 years, 2 months ago) by sshaw

changing silo module test to be a skip message rather than a failure

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Revision 5698 - Directory Listing
Modified Fri Jun 26 04:40:42 2015 UTC (3 years, 2 months ago) by sshaw

adding a test for silo being available but broken (as it currently is in debian/jessie

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Revision 5641 - Directory Listing
Modified Thu Jun 11 05:59:46 2015 UTC (3 years, 3 months ago) by sshaw

adjusted dict->list conversions to be deterministic under python3 (fixes ranks operating on elements in different orders)

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Revision 5639 - Directory Listing
Modified Thu Jun 11 01:34:26 2015 UTC (3 years, 3 months ago) by caltinay

make conversion of dict to list deterministic.
This should fix the MPI_Waitall failures we are seeing with python 3
and multiple ranks.

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Revision 5617 - Directory Listing
Modified Tue May 19 01:03:17 2015 UTC (3 years, 4 months ago) by jfenwick

Fix out of bounds in FinleyElement handling

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Revision 5614 - Directory Listing
Modified Fri May 15 05:37:34 2015 UTC (3 years, 4 months ago) by caltinay

Fixes #311 - avoid accessing last+1 element although it is never used.

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Revision 5613 - Directory Listing
Modified Fri May 15 04:49:58 2015 UTC (3 years, 4 months ago) by sshaw

fixing bad meshinfo when saving speckley metadata to VTK

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Revision 5593 - Directory Listing
Modified Fri Apr 24 01:36:26 2015 UTC (3 years, 5 months ago) by jfenwick

Fixing institution name to comply with policy

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Revision 5589 - Directory Listing
Modified Wed Apr 22 03:13:44 2015 UTC (3 years, 5 months ago) by jfenwick

Changes brought across from the debian preparation branch.

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Revision 5532 - Directory Listing
Modified Thu Mar 12 02:59:34 2015 UTC (3 years, 6 months ago) by caltinay

Moved element ownership knowledge from weipa to ripley and made a few
corrections.
Multidomains not checked.

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Revision 5527 - Directory Listing
Modified Wed Mar 11 03:48:13 2015 UTC (3 years, 6 months ago) by sshaw

test dependencies now use desired build path as check

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Revision 5496 - Directory Listing
Modified Thu Feb 26 00:36:29 2015 UTC (3 years, 6 months ago) by sshaw

fixing a missing build dependency of pythonMPI existing before individual tests are run

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Revision 5478 - Directory Listing
Modified Wed Feb 18 01:57:49 2015 UTC (3 years, 7 months ago) by sshaw

introducing shiny new reduced function spaces to speckley

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Revision 5472 - Directory Listing
Modified Mon Feb 16 05:44:59 2015 UTC (3 years, 7 months ago) by sshaw

more python define conflict fixes

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Revision 5465 - Directory Listing
Modified Mon Feb 16 00:03:05 2015 UTC (3 years, 7 months ago) by jfenwick

We now have an arena where any headers which insist on being first
because they do bad things, can battle to the death.

esysutils/first.h

should only be included in .cpp files.
#define the macros for the features you need in that .cpp

For this to work, any such claims to primacy must be resolved in
first.h, so please don't try to hack pretenders to the throne into the
include hierachy.

Next, will be removing some older attempts at the same thing.

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Revision 5464 - Directory Listing
Modified Sat Feb 14 00:25:03 2015 UTC (3 years, 7 months ago) by jfenwick

Fix for python compile warnings

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Revision 5448 - Directory Listing
Modified Fri Feb 6 05:31:37 2015 UTC (3 years, 7 months ago) by jfenwick

Updating all the dates

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Revision 5407 - Directory Listing
Modified Thu Dec 18 02:48:24 2014 UTC (3 years, 9 months ago) by jfenwick

release changes

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Revision 5364 - Directory Listing
Modified Mon Dec 15 01:45:43 2014 UTC (3 years, 9 months ago) by caltinay

Fixed Voxet origin which refers to cell centre in Voxet lingo.

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Revision 5240 - Directory Listing
Modified Tue Nov 4 03:47:26 2014 UTC (3 years, 10 months ago) by sshaw

adding options to record time and cycle number in silo and VTK files

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Revision 5201 - Directory Listing
Modified Fri Oct 10 06:23:03 2014 UTC (3 years, 11 months ago) by sshaw

fixing errors in speckley bricks node referencing in multidimensional subdivisions, fixes recent VTK failures

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Revision 5196 - Directory Listing
Modified Tue Oct 7 02:00:59 2014 UTC (3 years, 11 months ago) by caltinay

more type changes/fixes.

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Revision 5188 - Directory Listing
Modified Wed Oct 1 21:54:07 2014 UTC (3 years, 11 months ago) by caltinay

Fixed logic error.

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Revision 5187 - Directory Listing
Modified Wed Oct 1 06:49:24 2014 UTC (3 years, 11 months ago) by caltinay

escript, paso, ripley now compiles with index type long.

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Revision 5185 - Directory Listing
Modified Wed Oct 1 05:33:55 2014 UTC (3 years, 11 months ago) by caltinay

typo.

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Revision 5184 - Directory Listing
Modified Wed Oct 1 04:19:22 2014 UTC (3 years, 11 months ago) by caltinay

New scons option 'domains' to build only specified domains.
Defaults to all. Implements #257

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Revision 5161 - Directory Listing
Modified Wed Sep 17 06:37:39 2014 UTC (4 years ago) by sshaw

fixing odd crashes in speckley saving to silo

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Revision 5158 - Directory Listing
Modified Wed Sep 17 04:33:42 2014 UTC (4 years ago) by sshaw

removed vestigal FunctionOnBoundary and reduced functionspaces from speckley

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Revision 5140 - Directory Listing
Modified Wed Sep 10 05:49:19 2014 UTC (4 years ago) by sshaw

stripping debug print out of speckley section of weipa

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Revision 5132 - Directory Listing
Modified Thu Sep 4 07:02:24 2014 UTC (4 years ago) by sshaw

added MPI support and tests to speckley, cleaned out more ghostzone code

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Revision 5123 - Directory Listing
Modified Thu Aug 28 07:02:11 2014 UTC (4 years ago) by sshaw

Adding speckley (high-order) domain family, doesn't yet support MPI, Reduced functionspaces, or PDEs using A, B and/or C

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Revision 5097 - Directory Listing
Modified Sun Jul 13 01:02:24 2014 UTC (4 years, 2 months ago) by caltinay

Fixed undefined behaviour when indexing empty stl containers to pass
pointers (i.e. &vec[0]).

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Revision 5058 - Directory Listing
Modified Fri Jun 20 02:03:28 2014 UTC (4 years, 3 months ago) by sshaw

more test renames, marking some that look wrongly named as subclass required

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Revision 5028 - Directory Listing
Modified Wed Jun 11 22:49:41 2014 UTC (4 years, 3 months ago) by caltinay

this fails without abspath on a system.

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Revision 5017 - Directory Listing
Modified Tue Jun 10 02:16:18 2014 UTC (4 years, 3 months ago) by sshaw

scons now runs tests via a testrunner to collect lists of skipped tests in build/ (examples have their own builder since they aren't unit tests)
fixed hessian regularisation tests falling over by adding a shortcircuit optional arg that returns the pde, not the solution
added missing/omitted tests back into scons tests

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Revision 4938 - Directory Listing
Modified Wed May 14 01:13:23 2014 UTC (4 years, 4 months ago) by jfenwick

Modify unit tests to read their classes from
esys.escriptcore.utestselect

Change the line in that file to switch between unittest and unittest2

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Revision 4934 - Directory Listing
Modified Tue May 13 00:28:11 2014 UTC (4 years, 4 months ago) by jfenwick

This commit is brought to you by the number 4934 and the tool "meld".
Merge of partially complete split world code from branch.

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Revision 4920 - Directory Listing
Modified Wed Apr 30 10:17:05 2014 UTC (4 years, 4 months ago) by caltinay

Fixes #253 (unused var in weipa)

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Revision 4911 - Directory Listing
Modified Wed Apr 30 04:43:23 2014 UTC (4 years, 4 months ago) by jfenwick

fix unused var

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Revision 4778 - Directory Listing
Modified Thu Mar 20 00:41:58 2014 UTC (4 years, 6 months ago) by sshaw

python3ified tests using deprecated test methods ( #89 and #106 ), added run_seismic into downunder tests (with skips if obspy/segywriters fail to write)

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Revision 4695 - Directory Listing
Modified Wed Feb 19 06:58:41 2014 UTC (4 years, 7 months ago) by sshaw

added warning output when saving as silo but not built with silo support (redmine #87 )

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Revision 4657 - Directory Listing
Modified Thu Feb 6 06:12:20 2014 UTC (4 years, 7 months ago) by jfenwick

I changed some files.
Updated copyright notices, added GeoComp.

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Revision 4509 - Directory Listing
Modified Wed Jul 24 08:37:29 2013 UTC (5 years, 2 months ago) by jfenwick

Fixed paths for utest.sh

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Revision 4499 - Directory Listing
Modified Tue Jul 16 05:42:19 2013 UTC (5 years, 2 months ago) by caltinay

finley: mainly const'ness fixes, some formatting.

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Revision 4496 - Directory Listing
Modified Mon Jul 15 06:53:44 2013 UTC (5 years, 2 months ago) by caltinay

finley (WIP):
-moved all of finley into its namespace
-introduced some shared pointers
-Mesh is now a class
-other bits and pieces...

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Revision 4492 - Directory Listing
Modified Tue Jul 2 01:44:11 2013 UTC (5 years, 2 months ago) by caltinay

Finley changes that were held back while in release mode - moved more stuff
into finley namespace.

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Revision 4482 - Directory Listing
Modified Tue Jun 25 05:20:01 2013 UTC (5 years, 3 months ago) by caltinay

More leak fixes and suppression file additions.

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Revision 4461 - Directory Listing
Modified Sun Jun 16 23:39:31 2013 UTC (5 years, 3 months ago) by caltinay

small py3 fix.

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Revision 4431 - Directory Listing
Modified Fri May 31 07:09:03 2013 UTC (5 years, 3 months ago) by caltinay

finley ElementFile is now a class...

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Revision 4428 - Directory Listing
Modified Thu May 30 06:39:10 2013 UTC (5 years, 3 months ago) by caltinay

finley's NodeFile is now a class.
Associated changes:
- use of some C++ constructs/functions/types (1st pass)
- removal of obsolete pointer check
- merging of some duplicated code
- ...

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Revision 4398 - Directory Listing
Modified Thu May 9 08:42:44 2013 UTC (5 years, 4 months ago) by jfenwick

support for supressing doco subpackages. fiddling with one of the imports to try to reduce the number of places where Data appears.  Seriously it looks like we have 8 different Data classes

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Revision 4357 - Directory Listing
Modified Thu Apr 11 06:07:14 2013 UTC (5 years, 5 months ago) by caltinay

templated writeBinaryGrid and a bit of cleanup.

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Revision 4346 - Directory Listing
Modified Tue Apr 2 04:46:45 2013 UTC (5 years, 5 months ago) by jfenwick

Bringing the changes from doubleplusgood branch.
Can't merge directly because svn doesn't transfer changes to renamed files (mutter grumble).

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Revision 4341 - Directory Listing
Modified Mon Mar 25 04:01:25 2013 UTC (5 years, 6 months ago) by caltinay

GOCAD Voxet writer in weipa.

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Revision 4334 - Directory Listing
Modified Thu Mar 21 06:00:14 2013 UTC (5 years, 6 months ago) by caltinay

Preparations for Voxet (GOCAD) binary grid output + code clean up.
Changed node id's order to remove code duplication in weipa.
More work to do...

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Revision 4320 - Directory Listing
Modified Fri Mar 15 02:57:15 2013 UTC (5 years, 6 months ago) by caltinay

Moved file writer helper class to esysUtils and made it header-only. It will
be used by ripley writer methods.

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Revision 4154 - Directory Listing
Modified Tue Jan 22 09:30:23 2013 UTC (5 years, 8 months ago) by jfenwick

Round 1 of copyright fixes

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Revision 4114 - Directory Listing
Modified Fri Dec 14 04:24:46 2012 UTC (5 years, 9 months ago) by caltinay

Time to remove deprecated saveVTK/DX methods from Data and Domain.

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Revision 4078 - Directory Listing
Modified Fri Nov 16 07:50:49 2012 UTC (5 years, 10 months ago) by jfenwick

Unit tests for binary install with no scons and no source tree.
Script for installing and testing a .deb within a chroot.

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Revision 4042 - Directory Listing
Modified Mon Oct 29 05:55:58 2012 UTC (5 years, 10 months ago) by caltinay

New SaveSilo tests (only run if Silo module available and MPI size=1).
Tests are somewhat limited due to missing functionality in Silo module (devs
contacted about that).

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Revision 4036 - Directory Listing
Modified Thu Oct 25 06:21:03 2012 UTC (5 years, 11 months ago) by caltinay

Added saveVTK tests for ripley domains.

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Revision 4035 - Directory Listing
Modified Thu Oct 25 03:10:14 2012 UTC (5 years, 11 months ago) by caltinay

Tweaked scons files so tests work even when specifying non-absolute build_dir.

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Revision 4016 - Directory Listing
Modified Tue Oct 9 03:50:27 2012 UTC (5 years, 11 months ago) by caltinay

Skip data source tests under MPI for now as there is no straightforward way
of comparing the data (saveVTK appears to be the best option).

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Revision 3991 - Directory Listing
Modified Tue Sep 25 23:52:22 2012 UTC (5 years, 11 months ago) by caltinay

Updated doxygen cfg file and made a few first changes to doco.

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Revision 3982 - Directory Listing
Modified Fri Sep 21 03:23:22 2012 UTC (6 years ago) by jfenwick

More edits + removing pyvisi from trunk

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Revision 3981 - Directory Listing
Modified Fri Sep 21 02:47:54 2012 UTC (6 years ago) by jfenwick

First pass of updating copyright notices

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Revision 3975 - Directory Listing
Modified Thu Sep 20 01:54:06 2012 UTC (6 years ago) by caltinay

Merged symbolic branch into trunk. Curious what daniel and spartacus have to
say...

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Revision 3969 - Directory Listing
Modified Tue Sep 18 05:34:38 2012 UTC (6 years ago) by jfenwick

Removing reference to nose

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Revision 3962 - Directory Listing
Modified Tue Sep 11 09:12:07 2012 UTC (6 years ago) by jfenwick

Fix in brick for ambiguous typing.

Python work around for unit tests.
Passing cpp tests as well.

omp is disabled due to a weird linking error.

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Revision 3954 - Directory Listing
Modified Tue Sep 4 01:43:58 2012 UTC (6 years ago) by caltinay

Fixed an issue with incompatible nose.

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Revision 3944 - Directory Listing
Modified Mon Aug 20 02:11:22 2012 UTC (6 years, 1 month ago) by caltinay

Fixed ordering of Hex's in weipa's ripley writer.
Fixed an issue with auto domain subdivisions in ripley Brick.

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Revision 3911 - Directory Listing
Modified Thu Jun 14 01:01:03 2012 UTC (6 years, 3 months ago) by jfenwick

Copyright changes

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Revision 3892 - Directory Listing
Modified Tue Apr 10 08:57:23 2012 UTC (6 years, 5 months ago) by jfenwick

Merged changes across from the attempt2 branch.
This version builds and passes python2 tests.
It also passes most python3 tests.

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Revision 3867 - Directory Listing
Modified Thu Mar 15 05:45:54 2012 UTC (6 years, 6 months ago) by caltinay

weipa treats shapes (1,) and (1,1) as scalars. Fixes bogus output in VTK writer.

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Revision 3792 - Directory Listing
Modified Wed Feb 1 06:16:25 2012 UTC (6 years, 7 months ago) by caltinay

Merged ripley rectangular domain into trunk.

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Revision 3775 - Directory Listing
Modified Wed Jan 18 07:26:34 2012 UTC (6 years, 8 months ago) by jfenwick

Weipa updated

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Revision 3737 - Directory Listing
Modified Tue Dec 13 00:04:39 2011 UTC (6 years, 9 months ago) by caltinay

Reordered and removed superfluous libraries from link lines. Hope W32 likes
that.

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Revision 3675 - Directory Listing
Modified Thu Nov 17 00:53:38 2011 UTC (6 years, 10 months ago) by jfenwick

pasowrap joins the trunk.

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Revision 3628 - Directory Listing
Modified Wed Oct 19 02:09:36 2011 UTC (6 years, 11 months ago) by caltinay

Prepend our libraries instead of appending. This should fix HYPRE link
issue on epic.

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Revision 3627 - Directory Listing
Modified Fri Oct 14 13:54:49 2011 UTC (6 years, 11 months ago) by caltinay

Reverted some changes that slipped in and caused the Silo writer to not behave.

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Revision 3623 - Directory Listing
Modified Tue Oct 11 03:59:40 2011 UTC (6 years, 11 months ago) by caltinay

Added option to enable/disable saving of mesh data in weipa.
Now defaults to false since it's mainly for debugging.
Fixes #640.

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Revision 3607 - Directory Listing
Modified Mon Sep 19 22:08:24 2011 UTC (7 years ago) by caltinay

Fixed double/float warning.

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Revision 3606 - Directory Listing
Modified Mon Sep 19 16:26:51 2011 UTC (7 years ago) by trankine

Trial nosetests runner tests for better integration

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Revision 3602 - Directory Listing
Modified Mon Sep 19 02:38:11 2011 UTC (7 years ago) by caltinay

Fix scons checks on windows

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Revision 3598 - Directory Listing
Modified Fri Sep 16 01:01:17 2011 UTC (7 years ago) by caltinay

New config option build_shared (which replaces share_paso & share_esysUtils).
Also enabled building escriptreader library on Windows which should now
work in both shared and static mode.

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Revision 3597 - Directory Listing
Modified Thu Sep 15 06:03:17 2011 UTC (7 years ago) by caltinay

Switching to external cppunit:
-removed tools/CppUnitTest
-updated scons script and files
-updated tests to changed API
-updated readme

Bumped scons options file version to 201. Additions:
-cppunit*
-boomeramg*
-vsl_random

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Revision 3489 - Directory Listing
Modified Wed Mar 30 00:46:04 2011 UTC (7 years, 5 months ago) by caltinay

Fixed a few warnings emitted by gcc-4.6.

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Revision 3454 - Directory Listing
Modified Tue Jan 25 04:00:29 2011 UTC (7 years, 8 months ago) by caltinay

Fixed some minor doxygen issues.

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Revision 3400 - Directory Listing
Modified Mon Dec 6 02:23:07 2010 UTC (7 years, 9 months ago) by caltinay

Moved vtkCellType.h to weipa where it belongs now.

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Revision 3399 - Directory Listing
Modified Mon Dec 6 02:02:16 2010 UTC (7 years, 9 months ago) by caltinay

Updated VTK files to reflect changes to the writer.

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Revision 3398 - Directory Listing
Modified Mon Dec 6 00:02:33 2010 UTC (7 years, 9 months ago) by caltinay

Fixed the quad mask in a very specific case and changed saveVTK to write a
specific value for unused nodes instead of the first one which breaks unit
tests depending on the number of ranks used.
Still need to rebaseline some VTK files so the tests pass.

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Revision 3397 - Directory Listing
Modified Sun Dec 5 22:46:25 2010 UTC (7 years, 9 months ago) by caltinay

Fixed an issue in saveVTK/Silo.

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Revision 3371 - Directory Listing
Modified Mon Nov 22 06:13:47 2010 UTC (7 years, 10 months ago) by caltinay

Sort data objects by name before passing them to the EscriptDataset object.
This addresses #537.

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Revision 3365 - Directory Listing
Modified Thu Nov 18 10:49:40 2010 UTC (7 years, 10 months ago) by caltinay

Fixed compilation without VisIt.

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Revision 3364 - Directory Listing
Modified Thu Nov 18 05:51:44 2010 UTC (7 years, 10 months ago) by caltinay

Expose visitInitialize and visitPublishData through the python interface.

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Revision 3363 - Directory Listing
Modified Thu Nov 18 05:49:45 2010 UTC (7 years, 10 months ago) by caltinay

Catch some corner cases in weipa's VisIt controller to make it more foolproof
and allow reinitialization.

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Revision 3362 - Directory Listing
Modified Thu Nov 18 04:59:44 2010 UTC (7 years, 10 months ago) by caltinay

Made the VisIt interface less verbose in non-debug mode and removed unused
includes.

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Revision 3361 - Directory Listing
Modified Thu Nov 18 01:56:36 2010 UTC (7 years, 10 months ago) by caltinay

Minor enhancement.

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Revision 3357 - Directory Listing
Modified Wed Nov 17 06:21:37 2010 UTC (7 years, 10 months ago) by caltinay

Fixed a crash when loading data from netCDF files.

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Revision 3356 - Directory Listing
Modified Wed Nov 17 05:27:47 2010 UTC (7 years, 10 months ago) by caltinay

Finley type Finley_Tri3Face_Contact is no longer untested within weipa.

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Revision 3355 - Directory Listing
Modified Tue Nov 16 06:35:06 2010 UTC (7 years, 10 months ago) by caltinay

Fixed building with boost < 1.40 by
- removing the saveVTK method from dudley's MeshAdapter completely
  (no point introducing it now when we are trying to get rid of it soon)
- adding a helper function to weipa's python layer which can be called from C++
  with older boost versions.

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Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (7 years, 10 months ago) by caltinay

escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.

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Revision 3347 - Directory Listing
Modified Fri Nov 12 04:58:27 2010 UTC (7 years, 10 months ago) by caltinay

-Do not compare mesh variables (like owner, color etc) in the saveVTK tests
since they depend on the number of ranks.
-Fixed a problem where ranks without data samples can't know whether a
reduced mesh is to be used or not.

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Revision 3345 - Directory Listing
Modified Thu Nov 11 23:51:45 2010 UTC (7 years, 10 months ago) by caltinay

Moved dudley saveVTK tests to weipa and removed unneeded files.

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Revision 3344 - Directory Listing
Modified Thu Nov 11 23:26:52 2010 UTC (7 years, 10 months ago) by caltinay

Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK

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Revision 3342 - Directory Listing
Modified Tue Nov 9 03:41:58 2010 UTC (7 years, 10 months ago) by caltinay

Fixed interpolation for Line3Macro elements in weipa.

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Revision 3262 - Directory Listing
Modified Mon Oct 11 07:19:40 2010 UTC (7 years, 11 months ago) by gross

header file include added

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Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (7 years, 11 months ago) by jfenwick

Merging dudley and scons updates from branches

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Revision 3222 - Directory Listing
Modified Wed Sep 29 03:55:44 2010 UTC (7 years, 11 months ago) by caltinay

This should make windoze happy.

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Revision 3192 - Directory Listing
Modified Fri Sep 17 04:02:57 2010 UTC (8 years ago) by caltinay

- weipa's saveVTK will now save multiple files if the data objects to write are
  not on the same mesh.
- the save* methods now also add the appropriate file extension if not already
  supplied

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Revision 3191 - Directory Listing
Modified Fri Sep 17 00:44:20 2010 UTC (8 years ago) by caltinay

Use consistent naming for domain, mesh and 'chunks'

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Revision 3185 - Directory Listing
Modified Thu Sep 16 00:30:09 2010 UTC (8 years ago) by caltinay

Weipa now supports initialization from DataConstant instances.

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Revision 3176 - Directory Listing
Modified Sat Sep 11 01:09:54 2010 UTC (8 years ago) by caltinay

Maybe this will finally make the Mac happy.

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Revision 3165 - Directory Listing
Modified Tue Sep 7 09:15:16 2010 UTC (8 years ago) by caltinay

Next attempt at fixing mac test failure.

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Revision 3154 - Directory Listing
Modified Sun Sep 5 22:49:51 2010 UTC (8 years ago) by caltinay

Possible fix for mac linker error.

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Revision 3151 - Directory Listing
Modified Fri Sep 3 05:46:12 2010 UTC (8 years ago) by caltinay

More weipa tests including saveVTK.

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Revision 3147 - Directory Listing
Modified Fri Sep 3 02:03:05 2010 UTC (8 years ago) by caltinay

Don't clear domain on error. Moved adding Metadata-tags to the C++ level.

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Revision 3146 - Directory Listing
Modified Fri Sep 3 01:29:21 2010 UTC (8 years ago) by caltinay

Properly initialise data centering variable.

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Revision 3143 - Directory Listing
Modified Fri Sep 3 00:31:55 2010 UTC (8 years ago) by caltinay

-Moved finley specifics into weipa subclasses
-EscriptDataset is now the only weipa class exported in Windows
-Some weipa code cleanup

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Revision 3129 - Directory Listing
Modified Wed Sep 1 07:58:23 2010 UTC (8 years ago) by caltinay

Fixed unit test.

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Revision 3128 - Directory Listing
Modified Wed Sep 1 03:54:09 2010 UTC (8 years ago) by caltinay

-Added mesh axis label/unit and variable unit support to weipa's Silo writer
-Created EscriptDataset python wrapper
-Some code cleanup and a ghost zone fix for the VisIt interface

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Revision 3116 - Directory Listing
Modified Mon Aug 30 00:54:52 2010 UTC (8 years ago) by caltinay

Prepared weipa to use Silo's HDF5 driver & compression which performs better
than the default PDB. Code is disabled though because NetCDF 4 is currently
interfering (Unidata has been contacted). Added a note about this.

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Revision 3112 - Directory Listing
Modified Thu Aug 26 07:10:36 2010 UTC (8 years, 1 month ago) by gross

missing include added.

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Revision 3108 - Directory Listing
Modified Thu Aug 26 03:43:05 2010 UTC (8 years, 1 month ago) by caltinay

More weipa tests.

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Revision 3107 - Directory Listing
Modified Thu Aug 26 03:41:28 2010 UTC (8 years, 1 month ago) by caltinay

Removed ugly #defines in favour of a class.

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Revision 3104 - Directory Listing
Modified Wed Aug 25 00:53:25 2010 UTC (8 years, 1 month ago) by caltinay

Set up initial test suite files for weipa and some basic preliminary tests.

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Revision 3101 - Directory Listing
Modified Tue Aug 24 06:08:12 2010 UTC (8 years, 1 month ago) by caltinay

weipa's saveVTK now stores metadata schema & string as expected.

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Revision 3096 - Directory Listing
Modified Thu Aug 19 01:40:52 2010 UTC (8 years, 1 month ago) by caltinay

-New VisIt simulation control interface in weipa (uses VisIt's simv2)
-Rewrote restarts.py to be a more generic data manager for restarts and exports
-Removed weipa python file since the functionality is now handled by restarts.py

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Revision 3095 - Directory Listing
Modified Tue Aug 17 03:42:31 2010 UTC (8 years, 1 month ago) by caltinay

Fixed building libescriptreader for the VisIt plugin.

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Revision 3093 - Directory Listing
Modified Fri Aug 13 08:07:45 2010 UTC (8 years, 1 month ago) by gross

problem with no MPI compilation fixed

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Revision 3092 - Directory Listing
Modified Fri Aug 13 07:55:03 2010 UTC (8 years, 1 month ago) by caltinay

Added getDataFlat() which will be used by the VisIt simulation interface

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Revision 3091 - Directory Listing
Modified Fri Aug 13 07:47:57 2010 UTC (8 years, 1 month ago) by caltinay

-fixed cleanup on error when invoking escriptconvert in parallel
-fixed saving VTK files on one rank if data was loaded in chunks
-cleaned up EscriptDataset and split a couple of methods

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Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (8 years, 1 month ago) by jfenwick

Switched the build_dir keyword param to variant_dir.
Should fix issue 525.

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Revision 3037 - Directory Listing
Modified Mon Jun 14 00:59:30 2010 UTC (8 years, 3 months ago) by caltinay
Copied from: trunk/dataexporter revision 3035

Renamed escriptexport to weipa. Fixes #475.

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Revision 2940 - Directory Listing
Modified Fri Feb 19 00:38:45 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Minor potential optimization: prefer empty() over size()==0.

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Revision 2937 - Directory Listing
Modified Tue Feb 16 00:01:52 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Corrected an MPI datatype

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Revision 2929 - Directory Listing
Modified Mon Feb 8 05:13:27 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Implemented mantis issue 464 in dataexporter: better resolution for Tri6 and
Tet10 elements via point-in-triangle and point-in-tetrahedron tests.

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Revision 2919 - Directory Listing
Modified Thu Feb 4 00:53:58 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Took over Macro element handling from finley.saveVTK.

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Revision 2918 - Directory Listing
Modified Thu Feb 4 00:53:37 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Quick fix for Windows scons problem due to the same files being compiled twice
in the same directory. Visit plugin is not for Windows anyway so disabled it
there.

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Revision 2917 - Directory Listing
Modified Wed Feb 3 06:19:50 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Fix for the fix ;-) The dataexporter is used in a context where HAVE_MPI is set
but mpi not initialised -> have to check for mpiSize.

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Revision 2915 - Directory Listing
Modified Wed Feb 3 05:55:16 2010 UTC (8 years, 7 months ago) by gross
Original Path: trunk/dataexporter

uninitialised variable error for non-mpi case fixed.

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Revision 2910 - Directory Listing
Modified Wed Feb 3 03:22:31 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Added a libescriptreader.a target which does not depend on escript or finley
at runtime. This will be used for the VisIt plugin so is not built by default.

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Revision 2899 - Directory Listing
Modified Mon Feb 1 01:55:53 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Added missing declspec to FileSavers.

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Revision 2898 - Directory Listing
Modified Mon Feb 1 01:23:46 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Reverted the move of system_dep.h since it didn't solve the problem nicely.
Created a wrapper class for the needed functionality instead.

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Revision 2896 - Directory Listing
Modified Sun Jan 31 22:17:22 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Added missing extern C for finley include.

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Revision 2893 - Directory Listing
Modified Fri Jan 29 03:41:33 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Link to esysUtils to be able to use escript exceptions.

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Revision 2890 - Directory Listing
Modified Fri Jan 29 00:22:39 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Oh, apparently a 'defect in the standard' and VC++ didn't like it. Hopefully,
this should fix it.

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Revision 2888 - Directory Listing
Modified Fri Jan 29 00:07:00 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Looks like netcdf.hh doesn't exist on Windows so changed to netcdfcpp.h.

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Revision 2887 - Directory Listing
Modified Thu Jan 28 05:49:09 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Fixed a compile issue with MPI.

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Revision 2886 - Directory Listing
Modified Thu Jan 28 05:39:23 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

New version of saveVTK within dataexporter. Not pythonised yet since it needs
more testing and release 3.1 will not ship dataexporter.

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Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (8 years, 7 months ago) by jfenwick
Original Path: trunk/dataexporter

Don't panic.
Updating copyright stamps

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Revision 2880 - Directory Listing
Modified Thu Jan 28 01:21:30 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Better resolution for Hex27 & Rec9 data in dataexporter (mantis #486).
Saved Silo data resolution is now equal to finley.SaveVTK generated data in
all cases.

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Revision 2877 - Directory Listing
Modified Thu Jan 28 00:28:45 2010 UTC (8 years, 7 months ago) by caltinay
Original Path: trunk/dataexporter

Fixes to Silo writer: Multivars for tensors are now correct even with empty
ranks.

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Revision 2854 - Directory Listing
Modified Mon Jan 18 01:54:04 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

Fixed a compile error and removed unneeded member.

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Revision 2853 - Directory Listing
Modified Mon Jan 18 01:46:05 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

Do not attempt to read node file data if #nodes=0.

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Revision 2849 - Directory Listing
Modified Fri Jan 15 03:45:52 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

Oops...

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Revision 2848 - Directory Listing
Modified Fri Jan 15 03:44:44 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

Removed unneeded member and initialised some others in the constructor.

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Revision 2847 - Directory Listing
Modified Fri Jan 15 03:35:05 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

Improved error handling when using MPI and fixed Silo output when not all
ranks contribute to a data variable.

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Revision 2846 - Directory Listing
Modified Fri Jan 15 03:16:08 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

removeGhostNodes is broken and unnecessary anyway so removed.

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Revision 2837 - Directory Listing
Modified Wed Jan 13 01:28:23 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

Added missing import statement.

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Revision 2834 - Directory Listing
Modified Thu Jan 7 06:06:56 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

Reduced elements are now handled separate from the main elements within the
data exporter. This simplifies usage considerably.

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Revision 2830 - Directory Listing
Modified Thu Jan 7 04:49:55 2010 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/dataexporter

saveSilo now passes MPI communicator to data exporter.

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Revision 2822 - Directory Listing
Modified Mon Dec 14 03:10:16 2009 UTC (8 years, 9 months ago) by caltinay
Original Path: trunk/dataexporter

dataexporter: Ensure that NetCDF files created using N ranks are only loaded
when mpi size equals N or 1.

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Revision 2821 - Directory Listing
Modified Fri Dec 11 07:00:35 2009 UTC (8 years, 9 months ago) by caltinay
Original Path: trunk/dataexporter

EscriptDataset takes an optional communicator now.

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Revision 2819 - Directory Listing
Modified Thu Dec 10 04:12:35 2009 UTC (8 years, 9 months ago) by caltinay
Original Path: trunk/dataexporter

Added include to make badger happy. Hope everyone's happy now.

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Revision 2818 - Directory Listing
Modified Thu Dec 10 04:10:16 2009 UTC (8 years, 9 months ago) by caltinay
Original Path: trunk/dataexporter

dataexporter links against escript now to make the Mac happy.

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Revision 2812 - Directory Listing
Modified Tue Dec 8 00:12:07 2009 UTC (8 years, 9 months ago) by caltinay
Original Path: trunk/dataexporter

Implemented saveSilo within a new dataexporter module. If Silo is not available
at compile time the function throws. Ultimately, saveVTK will be moved here as
well.

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Revision 2811 - Directory Listing
Modified Mon Dec 7 05:57:16 2009 UTC (8 years, 9 months ago) by caltinay
Original Path: trunk/dataexporter

Fixed compilation when silo is not used.

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Revision 2810 - Directory Listing
Added Mon Dec 7 04:13:49 2009 UTC (8 years, 9 months ago) by caltinay
Original Path: trunk/dataexporter

Reincarnation of the escriptreader as a more flexible escriptexport library:
 - can be initialised with instances of escript::Data and Finley_Mesh
 - is now MPI aware at the EscriptDataset level including Silo writer
 - now uses boost shared pointers
The lib is currently only used by the escriptconvert tool but this is going to
change...