Log of /trunk/weipa

---

Revision 3489 - Directory Listing
Modified Wed Mar 30 00:46:04 2011 UTC (9 years, 9 months ago) by caltinay

Fixed a few warnings emitted by gcc-4.6.

---

Revision 3454 - Directory Listing
Modified Tue Jan 25 04:00:29 2011 UTC (10 years ago) by caltinay

Fixed some minor doxygen issues.

---

Revision 3400 - Directory Listing
Modified Mon Dec 6 02:23:07 2010 UTC (10 years, 1 month ago) by caltinay

Moved vtkCellType.h to weipa where it belongs now.

---

Revision 3399 - Directory Listing
Modified Mon Dec 6 02:02:16 2010 UTC (10 years, 1 month ago) by caltinay

Updated VTK files to reflect changes to the writer.

---

Revision 3398 - Directory Listing
Modified Mon Dec 6 00:02:33 2010 UTC (10 years, 1 month ago) by caltinay

Fixed the quad mask in a very specific case and changed saveVTK to write a
specific value for unused nodes instead of the first one which breaks unit
tests depending on the number of ranks used.
Still need to rebaseline some VTK files so the tests pass.

---

Revision 3397 - Directory Listing
Modified Sun Dec 5 22:46:25 2010 UTC (10 years, 1 month ago) by caltinay

Fixed an issue in saveVTK/Silo.

---

Revision 3371 - Directory Listing
Modified Mon Nov 22 06:13:47 2010 UTC (10 years, 2 months ago) by caltinay

Sort data objects by name before passing them to the EscriptDataset object.
This addresses #537.

---

Revision 3365 - Directory Listing
Modified Thu Nov 18 10:49:40 2010 UTC (10 years, 2 months ago) by caltinay

Fixed compilation without VisIt.

---

Revision 3364 - Directory Listing
Modified Thu Nov 18 05:51:44 2010 UTC (10 years, 2 months ago) by caltinay

Expose visitInitialize and visitPublishData through the python interface.

---

Revision 3363 - Directory Listing
Modified Thu Nov 18 05:49:45 2010 UTC (10 years, 2 months ago) by caltinay

Catch some corner cases in weipa's VisIt controller to make it more foolproof
and allow reinitialization.

---

Revision 3362 - Directory Listing
Modified Thu Nov 18 04:59:44 2010 UTC (10 years, 2 months ago) by caltinay

Made the VisIt interface less verbose in non-debug mode and removed unused
includes.

---

Revision 3361 - Directory Listing
Modified Thu Nov 18 01:56:36 2010 UTC (10 years, 2 months ago) by caltinay

Minor enhancement.

---

Revision 3357 - Directory Listing
Modified Wed Nov 17 06:21:37 2010 UTC (10 years, 2 months ago) by caltinay

Fixed a crash when loading data from netCDF files.

---

Revision 3356 - Directory Listing
Modified Wed Nov 17 05:27:47 2010 UTC (10 years, 2 months ago) by caltinay

Finley type Finley_Tri3Face_Contact is no longer untested within weipa.

---

Revision 3355 - Directory Listing
Modified Tue Nov 16 06:35:06 2010 UTC (10 years, 2 months ago) by caltinay

Fixed building with boost < 1.40 by
- removing the saveVTK method from dudley's MeshAdapter completely
  (no point introducing it now when we are trying to get rid of it soon)
- adding a helper function to weipa's python layer which can be called from C++
  with older boost versions.

---

Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (10 years, 2 months ago) by caltinay

escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.

---

Revision 3347 - Directory Listing
Modified Fri Nov 12 04:58:27 2010 UTC (10 years, 2 months ago) by caltinay

-Do not compare mesh variables (like owner, color etc) in the saveVTK tests
since they depend on the number of ranks.
-Fixed a problem where ranks without data samples can't know whether a
reduced mesh is to be used or not.

---

Revision 3345 - Directory Listing
Modified Thu Nov 11 23:51:45 2010 UTC (10 years, 2 months ago) by caltinay

Moved dudley saveVTK tests to weipa and removed unneeded files.

---

Revision 3344 - Directory Listing
Modified Thu Nov 11 23:26:52 2010 UTC (10 years, 2 months ago) by caltinay

Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK

---

Revision 3342 - Directory Listing
Modified Tue Nov 9 03:41:58 2010 UTC (10 years, 2 months ago) by caltinay

Fixed interpolation for Line3Macro elements in weipa.

---

Revision 3262 - Directory Listing
Modified Mon Oct 11 07:19:40 2010 UTC (10 years, 3 months ago) by gross

header file include added

---

Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (10 years, 3 months ago) by jfenwick

Merging dudley and scons updates from branches

---

Revision 3222 - Directory Listing
Modified Wed Sep 29 03:55:44 2010 UTC (10 years, 3 months ago) by caltinay

This should make windoze happy.

---

Revision 3192 - Directory Listing
Modified Fri Sep 17 04:02:57 2010 UTC (10 years, 4 months ago) by caltinay

- weipa's saveVTK will now save multiple files if the data objects to write are
  not on the same mesh.
- the save* methods now also add the appropriate file extension if not already
  supplied

---

Revision 3191 - Directory Listing
Modified Fri Sep 17 00:44:20 2010 UTC (10 years, 4 months ago) by caltinay

Use consistent naming for domain, mesh and 'chunks'

---

Revision 3185 - Directory Listing
Modified Thu Sep 16 00:30:09 2010 UTC (10 years, 4 months ago) by caltinay

Weipa now supports initialization from DataConstant instances.

---

Revision 3176 - Directory Listing
Modified Sat Sep 11 01:09:54 2010 UTC (10 years, 4 months ago) by caltinay

Maybe this will finally make the Mac happy.

---

Revision 3165 - Directory Listing
Modified Tue Sep 7 09:15:16 2010 UTC (10 years, 4 months ago) by caltinay

Next attempt at fixing mac test failure.

---

Revision 3154 - Directory Listing
Modified Sun Sep 5 22:49:51 2010 UTC (10 years, 4 months ago) by caltinay

Possible fix for mac linker error.

---

Revision 3151 - Directory Listing
Modified Fri Sep 3 05:46:12 2010 UTC (10 years, 4 months ago) by caltinay

More weipa tests including saveVTK.

---

Revision 3147 - Directory Listing
Modified Fri Sep 3 02:03:05 2010 UTC (10 years, 4 months ago) by caltinay

Don't clear domain on error. Moved adding Metadata-tags to the C++ level.

---

Revision 3146 - Directory Listing
Modified Fri Sep 3 01:29:21 2010 UTC (10 years, 4 months ago) by caltinay

Properly initialise data centering variable.

---

Revision 3143 - Directory Listing
Modified Fri Sep 3 00:31:55 2010 UTC (10 years, 4 months ago) by caltinay

-Moved finley specifics into weipa subclasses
-EscriptDataset is now the only weipa class exported in Windows
-Some weipa code cleanup

---

Revision 3129 - Directory Listing
Modified Wed Sep 1 07:58:23 2010 UTC (10 years, 4 months ago) by caltinay

Fixed unit test.

---

Revision 3128 - Directory Listing
Modified Wed Sep 1 03:54:09 2010 UTC (10 years, 4 months ago) by caltinay

-Added mesh axis label/unit and variable unit support to weipa's Silo writer
-Created EscriptDataset python wrapper
-Some code cleanup and a ghost zone fix for the VisIt interface

---

Revision 3116 - Directory Listing
Modified Mon Aug 30 00:54:52 2010 UTC (10 years, 4 months ago) by caltinay

Prepared weipa to use Silo's HDF5 driver & compression which performs better
than the default PDB. Code is disabled though because NetCDF 4 is currently
interfering (Unidata has been contacted). Added a note about this.

---

Revision 3112 - Directory Listing
Modified Thu Aug 26 07:10:36 2010 UTC (10 years, 5 months ago) by gross

missing include added.

---

Revision 3108 - Directory Listing
Modified Thu Aug 26 03:43:05 2010 UTC (10 years, 5 months ago) by caltinay

More weipa tests.

---

Revision 3107 - Directory Listing
Modified Thu Aug 26 03:41:28 2010 UTC (10 years, 5 months ago) by caltinay

Removed ugly #defines in favour of a class.

---

Revision 3104 - Directory Listing
Modified Wed Aug 25 00:53:25 2010 UTC (10 years, 5 months ago) by caltinay

Set up initial test suite files for weipa and some basic preliminary tests.

---

Revision 3101 - Directory Listing
Modified Tue Aug 24 06:08:12 2010 UTC (10 years, 5 months ago) by caltinay

weipa's saveVTK now stores metadata schema & string as expected.

---

Revision 3096 - Directory Listing
Modified Thu Aug 19 01:40:52 2010 UTC (10 years, 5 months ago) by caltinay

-New VisIt simulation control interface in weipa (uses VisIt's simv2)
-Rewrote restarts.py to be a more generic data manager for restarts and exports
-Removed weipa python file since the functionality is now handled by restarts.py

---

Revision 3095 - Directory Listing
Modified Tue Aug 17 03:42:31 2010 UTC (10 years, 5 months ago) by caltinay

Fixed building libescriptreader for the VisIt plugin.

---

Revision 3093 - Directory Listing
Modified Fri Aug 13 08:07:45 2010 UTC (10 years, 5 months ago) by gross

problem with no MPI compilation fixed

---

Revision 3092 - Directory Listing
Modified Fri Aug 13 07:55:03 2010 UTC (10 years, 5 months ago) by caltinay

Added getDataFlat() which will be used by the VisIt simulation interface

---

Revision 3091 - Directory Listing
Modified Fri Aug 13 07:47:57 2010 UTC (10 years, 5 months ago) by caltinay

-fixed cleanup on error when invoking escriptconvert in parallel
-fixed saving VTK files on one rank if data was loaded in chunks
-cleaned up EscriptDataset and split a couple of methods

---

Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (10 years, 5 months ago) by jfenwick

Switched the build_dir keyword param to variant_dir.
Should fix issue 525.

---

Revision 3037 - Directory Listing
Modified Mon Jun 14 00:59:30 2010 UTC (10 years, 7 months ago) by caltinay
Copied from: trunk/dataexporter revision 3035

Renamed escriptexport to weipa. Fixes #475.

---

Revision 2940 - Directory Listing
Modified Fri Feb 19 00:38:45 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Minor potential optimization: prefer empty() over size()==0.

---

Revision 2937 - Directory Listing
Modified Tue Feb 16 00:01:52 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Corrected an MPI datatype

---

Revision 2929 - Directory Listing
Modified Mon Feb 8 05:13:27 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Implemented mantis issue 464 in dataexporter: better resolution for Tri6 and
Tet10 elements via point-in-triangle and point-in-tetrahedron tests.

---

Revision 2919 - Directory Listing
Modified Thu Feb 4 00:53:58 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Took over Macro element handling from finley.saveVTK.

---

Revision 2918 - Directory Listing
Modified Thu Feb 4 00:53:37 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Quick fix for Windows scons problem due to the same files being compiled twice
in the same directory. Visit plugin is not for Windows anyway so disabled it
there.

---

Revision 2917 - Directory Listing
Modified Wed Feb 3 06:19:50 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Fix for the fix ;-) The dataexporter is used in a context where HAVE_MPI is set
but mpi not initialised -> have to check for mpiSize.

---

Revision 2915 - Directory Listing
Modified Wed Feb 3 05:55:16 2010 UTC (10 years, 11 months ago) by gross
Original Path: trunk/dataexporter

uninitialised variable error for non-mpi case fixed.

---

Revision 2910 - Directory Listing
Modified Wed Feb 3 03:22:31 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Added a libescriptreader.a target which does not depend on escript or finley
at runtime. This will be used for the VisIt plugin so is not built by default.

---

Revision 2899 - Directory Listing
Modified Mon Feb 1 01:55:53 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Added missing declspec to FileSavers.

---

Revision 2898 - Directory Listing
Modified Mon Feb 1 01:23:46 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Reverted the move of system_dep.h since it didn't solve the problem nicely.
Created a wrapper class for the needed functionality instead.

---

Revision 2896 - Directory Listing
Modified Sun Jan 31 22:17:22 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Added missing extern C for finley include.

---

Revision 2893 - Directory Listing
Modified Fri Jan 29 03:41:33 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Link to esysUtils to be able to use escript exceptions.

---

Revision 2890 - Directory Listing
Modified Fri Jan 29 00:22:39 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Oh, apparently a 'defect in the standard' and VC++ didn't like it. Hopefully,
this should fix it.

---

Revision 2888 - Directory Listing
Modified Fri Jan 29 00:07:00 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Looks like netcdf.hh doesn't exist on Windows so changed to netcdfcpp.h.

---

Revision 2887 - Directory Listing
Modified Thu Jan 28 05:49:09 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Fixed a compile issue with MPI.

---

Revision 2886 - Directory Listing
Modified Thu Jan 28 05:39:23 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

New version of saveVTK within dataexporter. Not pythonised yet since it needs
more testing and release 3.1 will not ship dataexporter.

---

Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (10 years, 11 months ago) by jfenwick
Original Path: trunk/dataexporter

Don't panic.
Updating copyright stamps

---

Revision 2880 - Directory Listing
Modified Thu Jan 28 01:21:30 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Better resolution for Hex27 & Rec9 data in dataexporter (mantis #486).
Saved Silo data resolution is now equal to finley.SaveVTK generated data in
all cases.

---

Revision 2877 - Directory Listing
Modified Thu Jan 28 00:28:45 2010 UTC (10 years, 11 months ago) by caltinay
Original Path: trunk/dataexporter

Fixes to Silo writer: Multivars for tensors are now correct even with empty
ranks.

---

Revision 2854 - Directory Listing
Modified Mon Jan 18 01:54:04 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

Fixed a compile error and removed unneeded member.

---

Revision 2853 - Directory Listing
Modified Mon Jan 18 01:46:05 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

Do not attempt to read node file data if #nodes=0.

---

Revision 2849 - Directory Listing
Modified Fri Jan 15 03:45:52 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

Oops...

---

Revision 2848 - Directory Listing
Modified Fri Jan 15 03:44:44 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

Removed unneeded member and initialised some others in the constructor.

---

Revision 2847 - Directory Listing
Modified Fri Jan 15 03:35:05 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

Improved error handling when using MPI and fixed Silo output when not all
ranks contribute to a data variable.

---

Revision 2846 - Directory Listing
Modified Fri Jan 15 03:16:08 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

removeGhostNodes is broken and unnecessary anyway so removed.

---

Revision 2837 - Directory Listing
Modified Wed Jan 13 01:28:23 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

Added missing import statement.

---

Revision 2834 - Directory Listing
Modified Thu Jan 7 06:06:56 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

Reduced elements are now handled separate from the main elements within the
data exporter. This simplifies usage considerably.

---

Revision 2830 - Directory Listing
Modified Thu Jan 7 04:49:55 2010 UTC (11 years ago) by caltinay
Original Path: trunk/dataexporter

saveSilo now passes MPI communicator to data exporter.

---

Revision 2822 - Directory Listing
Modified Mon Dec 14 03:10:16 2009 UTC (11 years, 1 month ago) by caltinay
Original Path: trunk/dataexporter

dataexporter: Ensure that NetCDF files created using N ranks are only loaded
when mpi size equals N or 1.

---

Revision 2821 - Directory Listing
Modified Fri Dec 11 07:00:35 2009 UTC (11 years, 1 month ago) by caltinay
Original Path: trunk/dataexporter

EscriptDataset takes an optional communicator now.

---

Revision 2819 - Directory Listing
Modified Thu Dec 10 04:12:35 2009 UTC (11 years, 1 month ago) by caltinay
Original Path: trunk/dataexporter

Added include to make badger happy. Hope everyone's happy now.

---

Revision 2818 - Directory Listing
Modified Thu Dec 10 04:10:16 2009 UTC (11 years, 1 month ago) by caltinay
Original Path: trunk/dataexporter

dataexporter links against escript now to make the Mac happy.

---

Revision 2812 - Directory Listing
Modified Tue Dec 8 00:12:07 2009 UTC (11 years, 1 month ago) by caltinay
Original Path: trunk/dataexporter

Implemented saveSilo within a new dataexporter module. If Silo is not available
at compile time the function throws. Ultimately, saveVTK will be moved here as
well.

---

Revision 2811 - Directory Listing
Modified Mon Dec 7 05:57:16 2009 UTC (11 years, 1 month ago) by caltinay
Original Path: trunk/dataexporter

Fixed compilation when silo is not used.

---

Revision 2810 - Directory Listing
Added Mon Dec 7 04:13:49 2009 UTC (11 years, 1 month ago) by caltinay
Original Path: trunk/dataexporter

Reincarnation of the escriptreader as a more flexible escriptexport library:
 - can be initialised with instances of escript::Data and Finley_Mesh
 - is now MPI aware at the EscriptDataset level including Silo writer
 - now uses boost shared pointers
The lib is currently only used by the escriptconvert tool but this is going to
change...